data_JSA
#

_chem_comp.id                                   JSA
_chem_comp.name                                 "5'-O-{[(1R)-1-hydroxydodecyl]sulfamoyl}adenosine"
_chem_comp.type                                 NON-POLYMER
_chem_comp.pdbx_type                            HETAIN
_chem_comp.formula                              "C22 H38 N6 O7 S"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        ?
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2018-05-11
_chem_comp.pdbx_modified_date                   2019-04-19
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       530.638
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    JSA
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       5ZRN
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 RCSB
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
JSA  C4     C1   C  0  1  Y  N  N   -0.565  33.376  -34.803  -4.136   3.078   0.279  C4     JSA   1  
JSA  C5     C2   C  0  1  Y  N  N   -1.807  33.444  -35.418  -3.027   3.914   0.066  C5     JSA   2  
JSA  C6     C3   C  0  1  Y  N  N   -2.219  32.365  -36.190  -3.228   5.305   0.102  C6     JSA   3  
JSA  N9     N1   N  0  1  Y  N  N   -0.406  34.502  -34.115  -3.664   1.793   0.192  N9     JSA   4  
JSA  C2     C4   C  0  1  Y  N  N   -0.228  31.280  -35.717  -5.467   4.936   0.525  C2     JSA   5  
JSA  C12    C5   C  0  1  N  N  N   -9.957  40.231  -41.765  13.472   2.231  -0.293  C12    JSA   6  
JSA  C11    C6   C  0  1  N  N  N  -10.196  39.448  -40.473  12.106   2.227   0.396  C11    JSA   7  
JSA  C10    C7   C  0  1  N  N  N   -8.873  39.156  -39.763  11.163   1.279  -0.348  C10    JSA   8  
JSA  "C9'"  C8   C  0  1  N  N  N   -9.092  38.375  -38.466   9.796   1.275   0.340  "C9'"  JSA   9  
JSA  "C8'"  C9   C  0  1  N  N  N   -7.763  38.176  -37.735   8.853   0.327  -0.403  "C8'"  JSA  10  
JSA  "C7'"  C10  C  0  1  N  N  N   -7.944  37.476  -36.387   7.487   0.323   0.285  "C7'"  JSA  11  
JSA  "C6'"  C11  C  0  1  N  N  N   -6.612  37.437  -35.636   6.544  -0.625  -0.458  "C6'"  JSA  12  
JSA  "C5'"  C12  C  0  1  N  N  N   -6.739  36.760  -34.270   5.177  -0.628   0.230  "C5'"  JSA  13  
JSA  "C4'"  C13  C  0  1  N  N  N   -5.400  36.805  -33.531   4.234  -1.577  -0.513  "C4'"  JSA  14  
JSA  "C3'"  C14  C  0  1  N  N  N   -4.992  38.251  -33.243   2.868  -1.580   0.175  "C3'"  JSA  15  
JSA  "C2'"  C15  C  0  1  N  N  N   -3.541  38.347  -32.767   1.925  -2.528  -0.568  "C2'"  JSA  16  
JSA  "C1'"  C16  C  0  1  N  N  R   -3.175  39.811  -32.515   0.559  -2.532   0.120  "C1'"  JSA  17  
JSA  O1     O1   O  0  1  N  N  N   -3.843  40.260  -31.333  -0.037  -1.238   0.004  O1     JSA  18  
JSA  N8     N2   N  0  1  N  N  N   -1.723  39.972  -32.354  -0.307  -3.527  -0.518  N8     JSA  19  
JSA  S1     S1   S  0  1  N  N  N   -1.188  39.385  -30.930  -1.480  -4.293   0.366  S1     JSA  20  
JSA  O2P    O2   O  0  1  N  N  N   -2.303  38.668  -30.230  -2.159  -5.158  -0.534  O2P    JSA  21  
JSA  O1P    O3   O  0  1  N  N  N   -0.704  40.520  -30.078  -0.852  -4.747   1.557  O1P    JSA  22  
JSA  "O5'"  O4   O  0  1  N  N  N   -0.112  38.476  -31.176  -2.489  -3.234   0.788  "O5'"  JSA  23  
JSA  C5A    C17  C  0  1  N  N  N    0.422  38.361  -32.498  -3.352  -2.801  -0.266  C5A    JSA  24  
JSA  C4A    C18  C  0  1  N  N  R    1.173  37.041  -32.682  -4.319  -1.743   0.270  C4A    JSA  25  
JSA  "O4'"  O5   O  0  1  N  N  N    0.335  35.910  -32.391  -3.593  -0.557   0.632  "O4'"  JSA  26  
JSA  C3A    C19  C  0  1  N  N  S    1.587  36.841  -34.139  -5.324  -1.347  -0.829  C3A    JSA  27  
JSA  "O3'"  O6   O  0  1  N  N  N    2.782  37.586  -34.391  -6.660  -1.629  -0.410  "O3'"  JSA  28  
JSA  C2A    C20  C  0  1  N  N  R    1.928  35.355  -34.066  -5.119   0.177  -1.000  C2A    JSA  29  
JSA  "O2'"  O7   O  0  1  N  N  N    3.146  35.174  -33.340  -6.372   0.846  -1.160  "O2'"  JSA  30  
JSA  C1A    C21  C  0  1  N  N  R    0.747  34.828  -33.246  -4.452   0.568   0.344  C1A    JSA  31  
JSA  C8     C22  C  0  1  Y  N  N   -1.493  35.250  -34.294  -2.326   1.866  -0.063  C8     JSA  32  
JSA  N7     N3   N  0  1  Y  N  N   -2.351  34.611  -35.086  -1.955   3.111  -0.136  N7     JSA  33  
JSA  N3     N4   N  0  1  Y  N  N    0.197  32.286  -34.973  -5.326   3.628   0.500  N3     JSA  34  
JSA  N1     N5   N  0  1  Y  N  N   -1.406  31.307  -36.314  -4.453   5.762   0.335  N1     JSA  35  
JSA  N6     N6   N  0  1  N  N  N   -3.406  32.373  -36.791  -2.173   6.178  -0.101  N6     JSA  36  
JSA  H1     H1   H  0  1  N  N  N    0.404  30.413  -35.840  -6.447   5.350   0.707  H1     JSA  37  
JSA  H2     H2   H  0  1  N  N  N  -10.920  40.429  -42.258  13.887   1.223  -0.282  H2     JSA  38  
JSA  H3     H3   H  0  1  N  N  N   -9.463  41.185  -41.529  13.358   2.566  -1.324  H3     JSA  39  
JSA  H4     H4   H  0  1  N  N  N   -9.316  39.642  -42.437  14.144   2.906   0.237  H4     JSA  40  
JSA  H5     H5   H  0  1  N  N  N  -10.840  40.040  -39.806  12.219   1.892   1.426  H5     JSA  41  
JSA  H6     H6   H  0  1  N  N  N  -10.694  38.497  -40.714  11.691   3.235   0.385  H6     JSA  42  
JSA  H7     H7   H  0  1  N  N  N   -8.231  38.564  -40.432  11.049   1.614  -1.379  H7     JSA  43  
JSA  H8     H8   H  0  1  N  N  N   -8.376  40.109  -39.527  11.578   0.271  -0.337  H8     JSA  44  
JSA  H9     H9   H  0  1  N  N  N   -9.782  38.934  -37.818   9.910   0.940   1.371  H9     JSA  45  
JSA  H10    H10  H  0  1  N  N  N   -9.526  37.393  -38.703   9.381   2.283   0.330  H10    JSA  46  
JSA  H11    H11  H  0  1  N  N  N   -7.100  37.565  -38.365   8.740   0.662  -1.434  H11    JSA  47  
JSA  H12    H12  H  0  1  N  N  N   -7.302  39.160  -37.564   9.268  -0.681  -0.392  H12    JSA  48  
JSA  H13    H13  H  0  1  N  N  N   -8.685  38.026  -35.787   7.600  -0.012   1.316  H13    JSA  49  
JSA  H14    H14  H  0  1  N  N  N   -8.298  36.448  -36.555   7.072   1.331   0.275  H14    JSA  50  
JSA  H15    H15  H  0  1  N  N  N   -5.881  36.881  -36.241   6.430  -0.289  -1.489  H15    JSA  51  
JSA  H16    H16  H  0  1  N  N  N   -6.258  38.468  -35.489   6.959  -1.632  -0.447  H16    JSA  52  
JSA  H17    H17  H  0  1  N  N  N   -7.501  37.284  -33.674   5.291  -0.964   1.261  H17    JSA  53  
JSA  H18    H18  H  0  1  N  N  N   -7.041  35.712  -34.411   4.762   0.379   0.219  H18    JSA  54  
JSA  H19    H19  H  0  1  N  N  N   -5.493  36.260  -32.580   4.121  -1.241  -1.544  H19    JSA  55  
JSA  H20    H20  H  0  1  N  N  N   -4.628  36.329  -34.153   4.649  -2.584  -0.503  H20    JSA  56  
JSA  H21    H21  H  0  1  N  N  N   -5.105  38.843  -34.163   2.982  -1.916   1.206  H21    JSA  57  
JSA  H22    H22  H  0  1  N  N  N   -5.651  38.658  -32.462   2.453  -0.572   0.164  H22    JSA  58  
JSA  H23    H23  H  0  1  N  N  N   -3.424  37.775  -31.835   1.811  -2.193  -1.599  H23    JSA  59  
JSA  H24    H24  H  0  1  N  N  N   -2.875  37.931  -33.538   2.340  -3.536  -0.558  H24    JSA  60  
JSA  H25    H25  H  0  1  N  N  N   -3.510  40.405  -33.378   0.683  -2.781   1.174  H25    JSA  61  
JSA  H26    H26  H  0  1  N  N  N   -3.482  39.814  -30.576  -0.178  -0.951  -0.909  H26    JSA  62  
JSA  H27    H27  H  0  1  N  N  N   -1.262  39.486  -33.096  -0.193  -3.738  -1.458  H27    JSA  63  
JSA  H28    H28  H  0  1  N  N  N    1.115  39.196  -32.678  -2.756  -2.374  -1.072  H28    JSA  64  
JSA  H29    H29  H  0  1  N  N  N   -0.404  38.407  -33.223  -3.918  -3.652  -0.644  H29    JSA  65  
JSA  H30    H30  H  0  1  N  N  N    2.068  37.037  -32.043  -4.850  -2.132   1.138  H30    JSA  66  
JSA  H31    H31  H  0  1  N  N  N    0.768  37.052  -34.843  -5.097  -1.869  -1.759  H31    JSA  67  
JSA  H32    H32  H  0  1  N  N  N    2.575  38.512  -34.437  -7.338  -1.346  -1.039  H32    JSA  68  
JSA  H33    H33  H  0  1  N  N  N    1.954  34.900  -35.067  -4.457   0.390  -1.839  H33    JSA  69  
JSA  H34    H34  H  0  1  N  N  N    3.355  34.248  -33.297  -6.869   0.567  -1.941  H34    JSA  70  
JSA  H35    H35  H  0  1  N  N  N    1.056  33.949  -32.661  -5.203   0.690   1.124  H35    JSA  71  
JSA  H36    H36  H  0  1  N  N  N   -1.654  36.227  -33.862  -1.672   1.016  -0.186  H36    JSA  72  
JSA  H37    H37  H  0  1  N  N  N   -3.533  31.517  -37.291  -1.283   5.832  -0.269  H37    JSA  73  
JSA  H38    H38  H  0  1  N  N  N   -4.127  32.467  -36.104  -2.324   7.135  -0.073  H38    JSA  74  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
JSA  C12    C11    SING  N  N   1  
JSA  C11    C10    SING  N  N   2  
JSA  C10    "C9'"  SING  N  N   3  
JSA  "C9'"  "C8'"  SING  N  N   4  
JSA  "C8'"  "C7'"  SING  N  N   5  
JSA  N6     C6     SING  N  N   6  
JSA  "C7'"  "C6'"  SING  N  N   7  
JSA  N1     C6     DOUB  Y  N   8  
JSA  N1     C2     SING  Y  N   9  
JSA  C6     C5     SING  Y  N  10  
JSA  C2     N3     DOUB  Y  N  11  
JSA  "C6'"  "C5'"  SING  N  N  12  
JSA  C5     N7     SING  Y  N  13  
JSA  C5     C4     DOUB  Y  N  14  
JSA  N7     C8     DOUB  Y  N  15  
JSA  N3     C4     SING  Y  N  16  
JSA  C4     N9     SING  Y  N  17  
JSA  "O3'"  C3A    SING  N  N  18  
JSA  C8     N9     SING  Y  N  19  
JSA  "C5'"  "C4'"  SING  N  N  20  
JSA  C3A    C2A    SING  N  N  21  
JSA  C3A    C4A    SING  N  N  22  
JSA  N9     C1A    SING  N  N  23  
JSA  C2A    "O2'"  SING  N  N  24  
JSA  C2A    C1A    SING  N  N  25  
JSA  "C4'"  "C3'"  SING  N  N  26  
JSA  C1A    "O4'"  SING  N  N  27  
JSA  "C3'"  "C2'"  SING  N  N  28  
JSA  "C2'"  "C1'"  SING  N  N  29  
JSA  C4A    C5A    SING  N  N  30  
JSA  C4A    "O4'"  SING  N  N  31  
JSA  "C1'"  N8     SING  N  N  32  
JSA  "C1'"  O1     SING  N  N  33  
JSA  C5A    "O5'"  SING  N  N  34  
JSA  N8     S1     SING  N  N  35  
JSA  "O5'"  S1     SING  N  N  36  
JSA  S1     O2P    DOUB  N  N  37  
JSA  S1     O1P    DOUB  N  N  38  
JSA  C2     H1     SING  N  N  39  
JSA  C12    H2     SING  N  N  40  
JSA  C12    H3     SING  N  N  41  
JSA  C12    H4     SING  N  N  42  
JSA  C11    H5     SING  N  N  43  
JSA  C11    H6     SING  N  N  44  
JSA  C10    H7     SING  N  N  45  
JSA  C10    H8     SING  N  N  46  
JSA  "C9'"  H9     SING  N  N  47  
JSA  "C9'"  H10    SING  N  N  48  
JSA  "C8'"  H11    SING  N  N  49  
JSA  "C8'"  H12    SING  N  N  50  
JSA  "C7'"  H13    SING  N  N  51  
JSA  "C7'"  H14    SING  N  N  52  
JSA  "C6'"  H15    SING  N  N  53  
JSA  "C6'"  H16    SING  N  N  54  
JSA  "C5'"  H17    SING  N  N  55  
JSA  "C5'"  H18    SING  N  N  56  
JSA  "C4'"  H19    SING  N  N  57  
JSA  "C4'"  H20    SING  N  N  58  
JSA  "C3'"  H21    SING  N  N  59  
JSA  "C3'"  H22    SING  N  N  60  
JSA  "C2'"  H23    SING  N  N  61  
JSA  "C2'"  H24    SING  N  N  62  
JSA  "C1'"  H25    SING  N  N  63  
JSA  O1     H26    SING  N  N  64  
JSA  N8     H27    SING  N  N  65  
JSA  C5A    H28    SING  N  N  66  
JSA  C5A    H29    SING  N  N  67  
JSA  C4A    H30    SING  N  N  68  
JSA  C3A    H31    SING  N  N  69  
JSA  "O3'"  H32    SING  N  N  70  
JSA  C2A    H33    SING  N  N  71  
JSA  "O2'"  H34    SING  N  N  72  
JSA  C1A    H35    SING  N  N  73  
JSA  C8     H36    SING  N  N  74  
JSA  N6     H37    SING  N  N  75  
JSA  N6     H38    SING  N  N  76  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
JSA  SMILES            ACDLabs               12.01  "c23n(C1OC(COS(NC(CCCCCCCCCCC)O)(=O)=O)C(C1O)O)cnc2c(ncn3)N"  
JSA  InChI             InChI                 1.03   "InChI=1S/C22H38N6O7S/c1-2-3-4-5-6-7-8-9-10-11-16(29)27-36(32,33)34-12-15-18(30)19(31)22(35-15)28-14-26-17-20(23)24-13-25-21(17)28/h13-16,18-19,22,27,29-31H,2-12H2,1H3,(H2,23,24,25)/t15-,16-,18-,19-,22-/m1/s1"  
JSA  InChIKey          InChI                 1.03   MDBNEGOGGFLHNH-FBLYDNEXSA-N  
JSA  SMILES_CANONICAL  CACTVS                3.385  "CCCCCCCCCCC[C@@H](O)N[S](=O)(=O)OC[C@H]1O[C@H]([C@H](O)[C@@H]1O)n2cnc3c(N)ncnc23"  
JSA  SMILES            CACTVS                3.385  "CCCCCCCCCCC[CH](O)N[S](=O)(=O)OC[CH]1O[CH]([CH](O)[CH]1O)n2cnc3c(N)ncnc23"  
JSA  SMILES_CANONICAL  "OpenEye OEToolkits"  2.0.6  "CCCCCCCCCCC[C@H](NS(=O)(=O)OC[C@@H]1[C@H]([C@H]([C@@H](O1)n2cnc3c2ncnc3N)O)O)O"  
JSA  SMILES            "OpenEye OEToolkits"  2.0.6  "CCCCCCCCCCCC(NS(=O)(=O)OCC1C(C(C(O1)n2cnc3c2ncnc3N)O)O)O"  
#   #
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
JSA  "SYSTEMATIC NAME"  ACDLabs               12.01  "5'-O-{[(1R)-1-hydroxydodecyl]sulfamoyl}adenosine"  
JSA  "SYSTEMATIC NAME"  "OpenEye OEToolkits"  2.0.6  "[(2~{R},3~{S},4~{R},5~{R})-5-(6-aminopurin-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methyl ~{N}-[(1~{R})-1-oxidanyldodecyl]sulfamate"  
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
JSA  "Create component"  2018-05-11  PDBJ  
JSA  "Initial release"   2019-04-24  RCSB  
##
