data_GBA
#

_chem_comp.id                                   GBA
_chem_comp.name                                 8-bromoadenosine
_chem_comp.type                                 NON-POLYMER
_chem_comp.pdbx_type                            HETAIN
_chem_comp.formula                              "C10 H12 Br N5 O4"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        ?
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2018-05-18
_chem_comp.pdbx_modified_date                   2019-05-10
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       346.137
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    GBA
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       6DFO
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 RCSB
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
GBA  C4     C1   C   0  1  Y  N  N  4.504  35.873  37.732   1.892  -0.793  -0.331  C4     GBA   1  
GBA  C5     C2   C   0  1  Y  N  N  3.905  36.936  37.158   2.752   0.292  -0.093  C5     GBA   2  
GBA  C6     C3   C   0  1  Y  N  N  4.627  37.782  36.403   4.137   0.076  -0.198  C6     GBA   3  
GBA  C8     C4   C   0  1  Y  N  N  2.425  35.838  38.232   0.721   1.011   0.161  C8     GBA   4  
GBA  N1     N1   N   0  1  Y  N  N  5.946  37.612  36.218   4.566  -1.140  -0.517  N1     GBA   5  
GBA  N3     N2   N   0  1  Y  N  N  5.839  35.656  37.586   2.413  -1.973  -0.649  N3     GBA   6  
GBA  "O2'"  O1   O   0  1  N  N  N  4.464  34.775  41.488  -0.769  -2.455   1.717  "O2'"  GBA   7  
GBA  "C2'"  C5   C   0  1  N  N  R  3.461  34.091  40.712  -1.294  -1.291   1.074  "C2'"  GBA   8  
GBA  "C3'"  C6   C   0  1  N  N  S  3.334  32.644  41.127  -2.778  -1.496   0.686  "C3'"  GBA   9  
GBA  "O3'"  O2   O   0  1  N  N  N  4.630  32.185  41.557  -3.093  -2.889   0.630  "O3'"  GBA  10  
GBA  "C4'"  C7   C   0  1  N  N  R  2.947  31.911  39.826  -2.894  -0.861  -0.713  "C4'"  GBA  11  
GBA  "C5'"  C8   C   0  1  N  N  N  1.474  31.469  39.801  -3.947   0.249  -0.695  "C5'"  GBA  12  
GBA  "O5'"  O3   O   0  1  N  N  N  1.128  30.986  38.482  -4.131   0.753  -2.020  "O5'"  GBA  13  
GBA  "O4'"  O4   O   0  1  N  N  N  3.150  32.824  38.724  -1.607  -0.311  -1.041  "O4'"  GBA  14  
GBA  "C1'"  C9   C   0  1  N  N  R  3.876  33.969  39.223  -0.624  -1.073  -0.307  "C1'"  GBA  15  
GBA  N9     N3   N   0  1  Y  N  N  3.583  35.203  38.418   0.618  -0.310  -0.163  N9     GBA  16  
GBA  BR8    BR1  BR  0  0  N  N  N  0.704  35.278  38.927  -0.740   2.162   0.502  BR8    GBA  17  
GBA  N7     N4   N   0  1  Y  N  N  2.614  36.905  37.474   1.974   1.362   0.202  N7     GBA  18  
GBA  C2     C10  C   0  1  Y  N  N  6.620  36.549  36.837   3.718  -2.130  -0.732  C2     GBA  19  
GBA  N6     N5   N   0  1  N  N  N  4.005  38.851  35.904   5.033   1.107   0.024  N6     GBA  20  
GBA  H1     H1   H   0  1  N  N  N  4.180  34.833  42.393  -1.218  -2.684   2.542  H1     GBA  21  
GBA  H2     H2   H   0  1  N  N  N  2.486  34.595  40.786  -1.175  -0.412   1.707  H2     GBA  22  
GBA  H3     H3   H   0  1  N  N  N  2.561  32.512  41.899  -3.432  -0.986   1.394  H3     GBA  23  
GBA  H4     H4   H   0  1  N  N  N  4.875  32.632  42.358  -4.011  -3.075   0.391  H4     GBA  24  
GBA  H5     H5   H   0  1  N  N  N  3.589  31.025  39.710  -3.170  -1.621  -1.444  H5     GBA  25  
GBA  H6     H6   H   0  1  N  N  N  0.832  32.325  40.056  -4.891  -0.152  -0.324  H6     GBA  26  
GBA  H7     H7   H   0  1  N  N  N  1.322  30.665  40.536  -3.614   1.056  -0.042  H7     GBA  27  
GBA  H8     H8   H   0  1  N  N  N  0.218  30.715  38.472  -4.787   1.461  -2.083  H8     GBA  28  
GBA  H9     H9   H   0  1  N  N  N  4.957  33.767  39.183  -0.435  -2.028  -0.797  H9     GBA  29  
GBA  H10    H10  H   0  1  N  N  N  7.688  36.424  36.742   4.109  -3.103  -0.988  H10    GBA  30  
GBA  H11    H11  H   0  1  N  N  N  4.665  39.426  35.420   4.708   1.991   0.256  H11    GBA  31  
GBA  H12    H12  H   0  1  N  N  N  3.292  38.555  35.268   5.986   0.946  -0.051  H12    GBA  32  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
GBA  N6     C6     SING  N  N   1  
GBA  N1     C6     DOUB  Y  N   2  
GBA  N1     C2     SING  Y  N   3  
GBA  C6     C5     SING  Y  N   4  
GBA  C2     N3     DOUB  Y  N   5  
GBA  C5     N7     SING  Y  N   6  
GBA  C5     C4     DOUB  Y  N   7  
GBA  N7     C8     DOUB  Y  N   8  
GBA  N3     C4     SING  Y  N   9  
GBA  C4     N9     SING  Y  N  10  
GBA  C8     N9     SING  Y  N  11  
GBA  C8     BR8    SING  N  N  12  
GBA  N9     "C1'"  SING  N  N  13  
GBA  "O5'"  "C5'"  SING  N  N  14  
GBA  "O4'"  "C1'"  SING  N  N  15  
GBA  "O4'"  "C4'"  SING  N  N  16  
GBA  "C1'"  "C2'"  SING  N  N  17  
GBA  "C5'"  "C4'"  SING  N  N  18  
GBA  "C4'"  "C3'"  SING  N  N  19  
GBA  "C2'"  "C3'"  SING  N  N  20  
GBA  "C2'"  "O2'"  SING  N  N  21  
GBA  "C3'"  "O3'"  SING  N  N  22  
GBA  "O2'"  H1     SING  N  N  23  
GBA  "C2'"  H2     SING  N  N  24  
GBA  "C3'"  H3     SING  N  N  25  
GBA  "O3'"  H4     SING  N  N  26  
GBA  "C4'"  H5     SING  N  N  27  
GBA  "C5'"  H6     SING  N  N  28  
GBA  "C5'"  H7     SING  N  N  29  
GBA  "O5'"  H8     SING  N  N  30  
GBA  "C1'"  H9     SING  N  N  31  
GBA  C2     H10    SING  N  N  32  
GBA  N6     H11    SING  N  N  33  
GBA  N6     H12    SING  N  N  34  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
GBA  SMILES            ACDLabs               12.01  "c12n(c(Br)nc1c(ncn2)N)C3C(O)C(O)C(CO)O3"  
GBA  InChI             InChI                 1.03   "InChI=1S/C10H12BrN5O4/c11-10-15-4-7(12)13-2-14-8(4)16(10)9-6(19)5(18)3(1-17)20-9/h2-3,5-6,9,17-19H,1H2,(H2,12,13,14)/t3-,5-,6-,9-/m1/s1"  
GBA  InChIKey          InChI                 1.03   VJUPMOPLUQHMLE-UUOKFMHZSA-N  
GBA  SMILES_CANONICAL  CACTVS                3.385  "Nc1ncnc2n([C@@H]3O[C@H](CO)[C@@H](O)[C@H]3O)c(Br)nc12"  
GBA  SMILES            CACTVS                3.385  "Nc1ncnc2n([CH]3O[CH](CO)[CH](O)[CH]3O)c(Br)nc12"  
GBA  SMILES_CANONICAL  "OpenEye OEToolkits"  2.0.6  "c1nc(c2c(n1)n(c(n2)Br)[C@H]3[C@@H]([C@@H]([C@H](O3)CO)O)O)N"  
GBA  SMILES            "OpenEye OEToolkits"  2.0.6  "c1nc(c2c(n1)n(c(n2)Br)C3C(C(C(O3)CO)O)O)N"  
#   #
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
GBA  "SYSTEMATIC NAME"  ACDLabs               12.01  8-bromoadenosine  
GBA  "SYSTEMATIC NAME"  "OpenEye OEToolkits"  2.0.6  "(2~{R},3~{R},4~{S},5~{R})-2-(6-azanyl-8-bromanyl-purin-9-yl)-5-(hydroxymethyl)oxolane-3,4-diol"  
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
GBA  "Create component"  2018-05-18  RCSB  
GBA  "Initial release"   2019-05-15  RCSB  
##
