data_4TA
# 
_chem_comp.id                                    4TA 
_chem_comp.name                                  "P1-(5'-ADENOSYL)P4-(5'-(2'-DEOXY-THYMIDYL))TETRAPHOSPHATE" 
_chem_comp.type                                  "RNA LINKING" 
_chem_comp.pdbx_type                             ATOMN 
_chem_comp.formula                               "C20 H25 N7 O20 P4" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    -4 
_chem_comp.pdbx_initial_date                     2003-05-20 
_chem_comp.pdbx_modified_date                    2012-01-05 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        807.342 
_chem_comp.one_letter_code                       N 
_chem_comp.three_letter_code                     4TA 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        1P73 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
4TA C5M    C5M    C 0  1 N N N 95.820  89.344 -12.301 -5.263 6.680  -1.992 C5M    4TA 1  
4TA C5     C5     C 0  1 N N N 97.106  90.073 -12.054 -5.943 5.405  -1.564 C5     4TA 2  
4TA C6     C6     C 0  1 N N N 97.945  90.391 -13.109 -5.634 4.827  -0.384 C6     4TA 3  
4TA N1     N1     N 0  1 N N N 99.100  91.041 -12.869 -6.261 3.670  -0.011 N1     4TA 4  
4TA C1B    C1*    C 0  1 N N R 99.983  91.398 -13.981 -5.925 3.043  1.270  C1B    4TA 5  
4TA C2B    C2*    C 0  1 N N N 100.834 90.247 -14.483 -7.150 3.073  2.205  C2B    4TA 6  
4TA C3B    C3*    C 0  1 N N S 100.902 90.490 -15.979 -7.412 1.583  2.534  C3B    4TA 7  
4TA O3B    O3*    O 0  1 N N N 102.121 91.113 -16.327 -7.751 1.417  3.912  O3B    4TA 8  
4TA C4B    C4*    C 0  1 N N R 99.771  91.449 -16.322 -6.040 0.935  2.221  C4B    4TA 9  
4TA C5B    C5*    C 0  1 N N N 98.723  90.809 -17.234 -6.207 -0.550 1.892  C5B    4TA 10 
4TA "O5'"  O5*    O 0  1 N N N 98.934  89.395 -17.313 -4.921 -1.149 1.722  "O5'"  4TA 11 
4TA PD     PD     P 0  1 N N N 97.830  88.413 -17.922 -4.719 -2.706 1.366  PD     4TA 12 
4TA O2D    O2D    O -1 1 N N N 97.358  87.493 -16.831 -5.229 -3.572 2.539  O2D    4TA 13 
4TA O1D    O1D    O 0  1 N N N 96.882  89.191 -18.805 -5.515 -3.050 0.087  O1D    4TA 14 
4TA OCD    OCD    O 0  1 N N N 98.638  87.462 -18.906 -3.155 -3.001 1.120  OCD    4TA 15 
4TA PC     PC     P 0  1 N N N 99.549  87.924 -20.147 -2.343 -4.171 0.369  PC     4TA 16 
4TA O1C    O1C    O -1 1 N N N 98.973  89.073 -20.937 -2.359 -5.449 1.236  O1C    4TA 17 
4TA O2C    O2C    O 0  1 N N N 100.967 87.982 -19.632 -3.007 -4.465 -0.995 O2C    4TA 18 
4TA OBC    OBC    O 0  1 N N N 99.431  86.574 -21.038 -0.821 -3.701 0.134  OBC    4TA 19 
4TA PB     PB     P 0  1 N N N 98.316  85.408 -20.869 0.354  -4.171 -0.862 PB     4TA 20 
4TA O2B    O2B    O -1 1 N N N 96.933  85.989 -20.778 0.936  -5.516 -0.374 O2B    4TA 21 
4TA O1B    O1B    O 0  1 N N N 98.811  84.416 -19.848 -0.218 -4.344 -2.287 O1B    4TA 22 
4TA OAB    OAB    O 0  1 N N N 98.409  84.625 -22.262 1.517  -3.058 -0.882 OAB    4TA 23 
4TA PA     PA     P 0  1 N N N 98.116  85.250 -23.716 2.708  -2.704 -1.906 PA     4TA 24 
4TA O1A    O1A    O -1 1 N N N 96.873  84.577 -24.242 3.834  -3.753 -1.770 O1A    4TA 25 
4TA O2A    O2A    O 0  1 N N N 98.202  86.762 -23.730 2.165  -2.716 -3.352 O2A    4TA 26 
4TA OA     OA     O 0  1 N N N 99.378  84.613 -24.484 3.293  -1.243 -1.564 OA     4TA 27 
4TA "C5'"  "C5'"  C 0  1 N N N 100.718 84.784 -24.026 4.289  -0.598 -2.360 "C5'"  4TA 28 
4TA "C4'"  "C4'"  C 0  1 N N R 101.677 84.827 -25.221 4.616  0.770  -1.758 "C4'"  4TA 29 
4TA "O1'"  "O1'"  O 0  1 N N N 101.922 83.511 -25.735 5.249  0.602  -0.478 "O1'"  4TA 30 
4TA "C1'"  "C1'"  C 0  1 N N R 101.352 83.355 -27.043 6.204  1.676  -0.336 "C1'"  4TA 31 
4TA "C2'"  "C2'"  C 0  1 N N R 100.539 84.625 -27.320 6.828  1.793  -1.750 "C2'"  4TA 32 
4TA "O2'"  "O2'"  O 0  1 N N N 100.649 85.107 -28.642 7.347  3.106  -1.971 "O2'"  4TA 33 
4TA "C3'"  "C3'"  C 0  1 N N S 101.107 85.652 -26.364 5.610  1.518  -2.666 "C3'"  4TA 34 
4TA "O3'"  "O3'"  O 0  1 N N N 102.148 86.388 -26.988 5.042  2.747  -3.124 "O3'"  4TA 35 
4TA N9A    N9A    N 0  1 Y N N 100.488 82.136 -27.045 7.228  1.328  0.652  N9A    4TA 36 
4TA C8A    C8A    C 0  1 Y N N 99.221  81.881 -26.609 7.591  0.069  1.029  C8A    4TA 37 
4TA N7A    N7A    N 0  1 Y N N 98.852  80.567 -26.845 8.531  0.127  1.927  N7A    4TA 38 
4TA C5A    C5A    C 0  1 Y N N 99.980  80.032 -27.451 8.830  1.423  2.183  C5A    4TA 39 
4TA C4A    C4A    C 0  1 Y N N 100.933 80.991 -27.552 8.002  2.209  1.364  C4A    4TA 40 
4TA N3A    N3A    N 0  1 Y N N 102.144 80.743 -28.107 8.105  3.533  1.422  N3A    4TA 41 
4TA C2A    C2A    C 0  1 Y N N 102.414 79.508 -28.567 8.972  4.104  2.231  C2A    4TA 42 
4TA N1A    N1A    N 0  1 Y N N 101.493 78.529 -28.480 9.773  3.407  3.017  N1A    4TA 43 
4TA C6A    C6A    C 0  1 Y N N 100.270 78.762 -27.928 9.736  2.079  3.034  C6A    4TA 44 
4TA N6A    N6A    N 0  1 N N N 99.337  77.778 -27.838 10.581 1.358  3.860  N6A    4TA 45 
4TA "O4'"  O4*    O 0  1 N N N 99.176  91.830 -15.079 -5.580 1.663  1.062  "O4'"  4TA 46 
4TA C2     C2     C 0  1 N N N 99.465  91.404 -11.552 -7.185 3.103  -0.809 C2     4TA 47 
4TA O2     O2     O 0  1 N N N 100.535 92.005 -11.355 -7.730 2.075  -0.457 O2     4TA 48 
4TA N3     N3     N 0  1 N N N 98.673  91.122 -10.500 -7.513 3.659  -1.990 N3     4TA 49 
4TA C4     C4     C 0  1 N N N 97.512  90.473 -10.691 -6.920 4.801  -2.392 C4     4TA 50 
4TA O4     O4     O 0  1 N N N 96.796  90.208 -9.717  -7.220 5.306  -3.459 O4     4TA 51 
4TA H5M1   1H5M   H 0  0 N N N 96.051  88.407 -12.860 -4.362 6.440  -2.557 H5M1   4TA 52 
4TA H5M2   2H5M   H 0  0 N N N 95.145  89.088 -11.452 -5.940 7.261  -2.618 H5M2   4TA 53 
4TA H5M3   3H5M   H 0  0 N N N 95.232  89.917 -13.055 -4.994 7.262  -1.110 H5M3   4TA 54 
4TA H6     H6     H 0  1 N N N 97.691  90.124 -14.149 -4.894 5.276  0.262  H6     4TA 55 
4TA H1B    H1*    H 0  1 N N N 100.668 92.189 -13.597 -5.092 3.571  1.733  H1B    4TA 56 
4TA "H2'1" 1H2*   H 0  0 N N N 100.463 89.236 -14.194 -6.922 3.630  3.114  "H2'1" 4TA 57 
4TA "H2'2" 2H2*   H 0  0 N N N 101.826 90.152 -13.983 -8.009 3.508  1.695  "H2'2" 4TA 58 
4TA H3B    H3*    H 0  1 N N N 100.822 89.522 -16.526 -8.192 1.174  1.892  H3B    4TA 59 
4TA H1     H1     H 0  1 N N N 102.164 91.265 -17.264 -8.557 1.882  4.178  H1     4TA 60 
4TA H4B    H4*    H 0  1 N N N 100.173 92.326 -16.881 -5.353 1.066  3.057  H4B    4TA 61 
4TA "H5'1" 1H5*   H 0  0 N N N 98.702  91.284 -18.242 -6.734 -1.046 2.707  "H5'1" 4TA 62 
4TA "H5'2" 2H5*   H 0  0 N N N 97.684  91.058 -16.914 -6.782 -0.655 0.971  "H5'2" 4TA 63 
4TA H5B    "1H5'" H 0  1 N N N 101.009 84.005 -23.284 5.191  -1.211 -2.379 H5B    4TA 64 
4TA H5D    "2H5'" H 0  1 N N N 100.825 85.680 -23.371 3.916  -0.468 -3.375 H5D    4TA 65 
4TA "H4'"  "H4'"  H 0  1 N N N 102.621 85.286 -24.845 3.702  1.353  -1.645 "H4'"  4TA 66 
4TA "H1'"  "H1'"  H 0  1 N N N 102.125 83.223 -27.836 5.702  2.603  -0.060 "H1'"  4TA 67 
4TA "H2'"  "H2'"  H 0  1 N N N 99.453  84.413 -27.183 7.603  1.041  -1.897 "H2'"  4TA 68 
4TA H2     H2     H 0  1 N N N 100.145 85.894 -28.814 7.748  3.229  -2.843 H2     4TA 69 
4TA "H3'"  "H3'"  H 0  1 N N N 100.339 86.388 -26.029 5.901  0.893  -3.510 "H3'"  4TA 70 
4TA H3     H3     H 0  1 N N N 101.792 86.904 -27.702 5.626  3.259  -3.700 H3     4TA 71 
4TA H8A    H8A    H 0  1 N N N 98.579  82.638 -26.128 7.161  -0.842 0.640  H8A    4TA 72 
4TA H2A    H2A    H 0  1 N N N 103.398 79.297 -29.019 9.031  5.182  2.253  H2A    4TA 73 
4TA H6A1   1H6A   H 0  0 N N N 98.479  78.103 -28.284 10.552 0.388  3.856  H6A1   4TA 74 
4TA H6A2   2H6A   H 0  0 N N N 99.550  76.844 -28.189 11.202 1.822  4.443  H6A2   4TA 75 
4TA HN3    HN3    H 0  1 N N N 98.952  91.400 -9.559  -8.180 3.237  -2.553 HN3    4TA 76 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
4TA C5M   C5     SING N N 1  
4TA C5M   H5M1   SING N N 2  
4TA C5M   H5M2   SING N N 3  
4TA C5M   H5M3   SING N N 4  
4TA C5    C6     DOUB N N 5  
4TA C5    C4     SING N N 6  
4TA C6    N1     SING N N 7  
4TA C6    H6     SING N N 8  
4TA N1    C1B    SING N N 9  
4TA N1    C2     SING N N 10 
4TA C1B   C2B    SING N N 11 
4TA C1B   "O4'"  SING N N 12 
4TA C1B   H1B    SING N N 13 
4TA C2B   C3B    SING N N 14 
4TA C2B   "H2'1" SING N N 15 
4TA C2B   "H2'2" SING N N 16 
4TA C3B   O3B    SING N N 17 
4TA C3B   C4B    SING N N 18 
4TA C3B   H3B    SING N N 19 
4TA O3B   H1     SING N N 20 
4TA C4B   C5B    SING N N 21 
4TA C4B   "O4'"  SING N N 22 
4TA C4B   H4B    SING N N 23 
4TA C5B   "O5'"  SING N N 24 
4TA C5B   "H5'1" SING N N 25 
4TA C5B   "H5'2" SING N N 26 
4TA "O5'" PD     SING N N 27 
4TA PD    O2D    SING N N 28 
4TA PD    O1D    DOUB N N 29 
4TA PD    OCD    SING N N 30 
4TA OCD   PC     SING N N 31 
4TA PC    O1C    SING N N 32 
4TA PC    O2C    DOUB N N 33 
4TA PC    OBC    SING N N 34 
4TA OBC   PB     SING N N 35 
4TA PB    O2B    SING N N 36 
4TA PB    O1B    DOUB N N 37 
4TA PB    OAB    SING N N 38 
4TA OAB   PA     SING N N 39 
4TA PA    O1A    SING N N 40 
4TA PA    O2A    DOUB N N 41 
4TA PA    OA     SING N N 42 
4TA OA    "C5'"  SING N N 43 
4TA "C5'" "C4'"  SING N N 44 
4TA "C5'" H5B    SING N N 45 
4TA "C5'" H5D    SING N N 46 
4TA "C4'" "O1'"  SING N N 47 
4TA "C4'" "C3'"  SING N N 48 
4TA "C4'" "H4'"  SING N N 49 
4TA "O1'" "C1'"  SING N N 50 
4TA "C1'" "C2'"  SING N N 51 
4TA "C1'" N9A    SING N N 52 
4TA "C1'" "H1'"  SING N N 53 
4TA "C2'" "O2'"  SING N N 54 
4TA "C2'" "C3'"  SING N N 55 
4TA "C2'" "H2'"  SING N N 56 
4TA "O2'" H2     SING N N 57 
4TA "C3'" "O3'"  SING N N 58 
4TA "C3'" "H3'"  SING N N 59 
4TA "O3'" H3     SING N N 60 
4TA N9A   C8A    SING Y N 61 
4TA N9A   C4A    SING Y N 62 
4TA C8A   N7A    DOUB Y N 63 
4TA C8A   H8A    SING N N 64 
4TA N7A   C5A    SING Y N 65 
4TA C5A   C4A    DOUB Y N 66 
4TA C5A   C6A    SING Y N 67 
4TA C4A   N3A    SING Y N 68 
4TA N3A   C2A    DOUB Y N 69 
4TA C2A   N1A    SING Y N 70 
4TA C2A   H2A    SING N N 71 
4TA N1A   C6A    DOUB Y N 72 
4TA C6A   N6A    SING N N 73 
4TA N6A   H6A1   SING N N 74 
4TA N6A   H6A2   SING N N 75 
4TA C2    O2     DOUB N N 76 
4TA C2    N3     SING N N 77 
4TA N3    C4     SING N N 78 
4TA N3    HN3    SING N N 79 
4TA C4    O4     DOUB N N 80 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
4TA InChI            InChI                1.03  
;InChI=1S/C20H29N7O20P4/c1-8-3-26(20(32)25-18(8)31)12-2-9(28)10(43-12)4-41-48(33,34)45-50(37,38)47-51(39,40)46-49(35,36)42-5-11-14(29)15(30)19(44-11)27-7-24-13-16(21)22-6-23-17(13)27/h3,6-7,9-12,14-15,19,28-30H,2,4-5H2,1H3,(H,33,34)(H,35,36)(H,37,38)(H,39,40)(H2,21,22,23)(H,25,31,32)/p-4/t9-,10+,11+,12+,14+,15+,19+/m0/s1
;
4TA InChIKey         InChI                1.03  WLGHSSFVEUABFP-SLFMBYJQSA-J 
4TA SMILES_CANONICAL CACTVS               3.385 "CC1=CN([C@H]2C[C@H](O)[C@@H](CO[P]([O-])(=O)O[P]([O-])(=O)O[P]([O-])(=O)O[P]([O-])(=O)OC[C@H]3O[C@H]([C@H](O)[C@@H]3O)n4cnc5c(N)ncnc45)O2)C(=O)NC1=O" 
4TA SMILES           CACTVS               3.385 "CC1=CN([CH]2C[CH](O)[CH](CO[P]([O-])(=O)O[P]([O-])(=O)O[P]([O-])(=O)O[P]([O-])(=O)OC[CH]3O[CH]([CH](O)[CH]3O)n4cnc5c(N)ncnc45)O2)C(=O)NC1=O" 
4TA SMILES_CANONICAL "OpenEye OEToolkits" 1.7.5 "CC1=CN(C(=O)NC1=O)[C@H]2C[C@@H]([C@H](O2)COP(=O)([O-])OP(=O)([O-])OP(=O)([O-])OP(=O)([O-])OC[C@@H]3[C@H]([C@H]([C@@H](O3)n4cnc5c4ncnc5N)O)O)O" 
4TA SMILES           "OpenEye OEToolkits" 1.7.5 "CC1=CN(C(=O)NC1=O)C2CC(C(O2)COP(=O)([O-])OP(=O)([O-])OP(=O)([O-])OP(=O)([O-])OCC3C(C(C(O3)n4cnc5c4ncnc5N)O)O)O" 
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
4TA "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.2 
"[[(2R,3S,4R,5R)-5-(6-aminopurin-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methoxy-oxidanidyl-phosphoryl] [[[(2R,3S,5R)-5-[5-methyl-2,4-bis(oxidanylidene)pyrimidin-1-yl]-3-oxidanyl-oxolan-2-yl]methoxy-oxidanidyl-phosphoryl]oxy-oxidanidyl-phosphoryl] phosphate" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
4TA "Create component"   2003-05-20 RCSB 
4TA "Modify descriptor"  2011-06-04 RCSB 
4TA "Modify descriptor"  2011-06-07 RCSB 
4TA "Modify identifier"  2011-06-07 RCSB 
4TA "Modify descriptor"  2012-01-05 RCSB 
4TA "Modify coordinates" 2012-01-05 RCSB 
# 
