data_0DA
# 
_chem_comp.id                                    0DA 
_chem_comp.name                                  
;2'-DEOXY-L-RIBO-FURANOSYL ADENOSINE-5'-MONOPHOSPHATE
;
_chem_comp.type                                  "L-DNA LINKING" 
_chem_comp.pdbx_type                             ATOMN 
_chem_comp.formula                               "C10 H14 N5 O6 P" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2009-07-27 
_chem_comp.pdbx_modified_date                    2015-05-01 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         A 
_chem_comp.formula_weight                        331.222 
_chem_comp.one_letter_code                       A 
_chem_comp.three_letter_code                     0DA 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        ? 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
0DA C8A    C8A    C 0 1 Y N N 5.903  1.463  1.322  1.766  1.103  -0.839 C8A    0DA 1  
0DA N9A    N9A    N 0 1 Y N N 5.175  1.605  0.177  1.879  -0.007 -0.056 N9A    0DA 2  
0DA C4A    C4A    C 0 1 Y N N 3.859  1.627  0.567  3.197  -0.119 0.310  C4A    0DA 3  
0DA C5A    C5A    C 0 1 Y N N 3.875  1.565  1.933  3.858  0.967  -0.287 C5A    0DA 4  
0DA N7A    N7A    N 0 1 Y N N 5.187  1.468  2.416  2.928  1.673  -0.974 N7A    0DA 5  
0DA N3A    N3A    N 0 1 Y N N 2.766  1.690  -0.240 3.896  -0.975 1.048  N3A    0DA 6  
0DA C2A    C2A    C 0 1 Y N N 1.634  1.668  0.464  5.191  -0.811 1.219  C2A    0DA 7  
0DA N1A    N1A    N 0 1 Y N N 1.483  1.626  1.788  5.856  0.194  0.679  N1A    0DA 8  
0DA C6A    C6A    C 0 1 Y N N 2.598  1.586  2.535  5.241  1.099  -0.075 C6A    0DA 9  
0DA N6A    N6A    N 0 1 N N N 2.427  1.540  3.844  5.947  2.148  -0.637 N6A    0DA 10 
0DA "C4'"  "C4'"  C 0 1 N N S 7.924  2.396  -1.411 -1.465 -1.285 0.147  "C4'"  0DA 11 
0DA "O4'"  "O4'"  O 0 1 N N N 6.695  2.912  -0.970 -0.479 -0.234 0.248  "O4'"  0DA 12 
0DA "C3'"  "C3'"  C 0 1 N N R 7.754  0.916  -1.767 -0.837 -2.326 -0.806 "C3'"  0DA 13 
0DA "C2'"  "C2'"  C 0 1 N N N 6.253  0.801  -1.985 0.683  -2.076 -0.686 "C2'"  0DA 14 
0DA "C1'"  "C1'"  C 0 1 N N S 5.689  1.952  -1.155 0.793  -0.913 0.326  "C1'"  0DA 15 
0DA "O3'"  "O3'"  O 0 1 N N N 8.076  1.303  -3.105 -1.161 -3.652 -0.383 "O3'"  0DA 16 
0DA "C5'"  "C5'"  C 0 1 N N N 9.058  2.676  -0.408 -2.767 -0.739 -0.444 "C5'"  0DA 17 
0DA "O5'"  "O5'"  O 0 1 N N N 10.121 3.216  -1.198 -3.353 0.190  0.470  "O5'"  0DA 18 
0DA P      P      P 0 1 N N N 11.617 3.631  -0.459 -4.735 0.960  0.173  P      0DA 19 
0DA OP2    OP2    O 0 1 N N N 11.779 3.143  1.183  -5.939 -0.106 0.100  OP2    0DA 20 
0DA OP3    OP3    O 0 1 N Y N 13.097 2.756  -0.413 -5.025 2.017  1.352  OP3    0DA 21 
0DA OP1    OP1    O 0 1 N N N 11.814 5.331  -0.636 -4.631 1.678  -1.118 OP1    0DA 22 
0DA H8A    H8A    H 0 1 N N N 6.978  1.356  1.325  0.848  1.455  -1.286 H8A    0DA 23 
0DA H2A    H2A    H 0 1 N N N 0.721  1.687  -0.113 5.729  -1.525 1.825  H2A    0DA 24 
0DA HN61   HN61   H 0 0 N N N 1.449  1.543  4.053  5.487  2.803  -1.186 HN61   0DA 25 
0DA HN62   HN62   H 0 0 N N N 2.842  0.705  4.205  6.901  2.229  -0.483 HN62   0DA 26 
0DA "H4'"  "H4'"  H 0 1 N N N 8.236  2.917  -2.328 -1.649 -1.728 1.126  "H4'"  0DA 27 
0DA "H3'"  "H3'"  H 0 1 N N N 8.208  0.106  -1.177 -1.172 -2.158 -1.829 "H3'"  0DA 28 
0DA "H2'"  "H2'"  H 0 1 N N N 5.989  0.902  -3.048 1.187  -2.963 -0.303 "H2'"  0DA 29 
0DA "H2''" "H2''" H 0 0 N N N 5.868  -0.171 -1.644 1.099  -1.784 -1.650 "H2''" 0DA 30 
0DA "H1'"  "H1'"  H 0 1 N N N 4.826  2.310  -1.735 0.957  -1.298 1.332  "H1'"  0DA 31 
0DA "HO3'" "HO3'" H 0 0 N Y N 8.062  0.538  -3.668 -0.792 -4.346 -0.946 "HO3'" 0DA 32 
0DA "H5'"  "H5'"  H 0 1 N N N 8.736  3.392  0.363  -2.554 -0.235 -1.387 "H5'"  0DA 33 
0DA "H5''" "H5''" H 0 0 N N N 9.373  1.753  0.100  -3.459 -1.562 -0.620 "H5''" 0DA 34 
0DA H2P    H2P    H 0 1 N N N 11.952 3.904  1.724  -6.064 -0.614 0.913  H2P    0DA 35 
0DA HOP3   HOP3   H 0 0 N Y N 13.825 3.360  -0.495 -5.843 2.519  1.239  HOP3   0DA 36 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
0DA C8A   N9A    SING Y N 1  
0DA C8A   N7A    DOUB Y N 2  
0DA N9A   C4A    SING Y N 3  
0DA N9A   "C1'"  SING N N 4  
0DA C4A   C5A    DOUB Y N 5  
0DA C4A   N3A    SING Y N 6  
0DA C5A   N7A    SING Y N 7  
0DA C5A   C6A    SING Y N 8  
0DA N3A   C2A    DOUB Y N 9  
0DA C2A   N1A    SING Y N 10 
0DA N1A   C6A    DOUB Y N 11 
0DA C6A   N6A    SING N N 12 
0DA "C4'" "O4'"  SING N N 13 
0DA "C4'" "C3'"  SING N N 14 
0DA "O4'" "C1'"  SING N N 15 
0DA "C3'" "C2'"  SING N N 16 
0DA "C2'" "C1'"  SING N N 17 
0DA "C3'" "O3'"  SING N N 18 
0DA "C4'" "C5'"  SING N N 19 
0DA "C5'" "O5'"  SING N N 20 
0DA "O5'" P      SING N N 21 
0DA P     OP2    SING N N 22 
0DA P     OP3    SING N N 23 
0DA P     OP1    DOUB N N 24 
0DA C8A   H8A    SING N N 25 
0DA C2A   H2A    SING N N 26 
0DA N6A   HN61   SING N N 27 
0DA N6A   HN62   SING N N 28 
0DA "C4'" "H4'"  SING N N 29 
0DA "C3'" "H3'"  SING N N 30 
0DA "C2'" "H2'"  SING N N 31 
0DA "C2'" "H2''" SING N N 32 
0DA "C1'" "H1'"  SING N N 33 
0DA "O3'" "HO3'" SING N N 34 
0DA "C5'" "H5'"  SING N N 35 
0DA "C5'" "H5''" SING N N 36 
0DA OP2   H2P    SING N N 37 
0DA OP3   HOP3   SING N N 38 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
0DA SMILES           ACDLabs              12.01 "O=P(O)(O)OCC3OC(n2cnc1c(ncnc12)N)CC3O"                                                                                                          
0DA SMILES_CANONICAL CACTVS               3.370 "Nc1ncnc2n(cnc12)[C@@H]3C[C@@H](O)[C@H](CO[P](O)(O)=O)O3"                                                                                        
0DA SMILES           CACTVS               3.370 "Nc1ncnc2n(cnc12)[CH]3C[CH](O)[CH](CO[P](O)(O)=O)O3"                                                                                             
0DA SMILES_CANONICAL "OpenEye OEToolkits" 1.7.0 "c1nc(c2c(n1)n(cn2)[C@@H]3C[C@H]([C@@H](O3)COP(=O)(O)O)O)N"                                                                                      
0DA SMILES           "OpenEye OEToolkits" 1.7.0 "c1nc(c2c(n1)n(cn2)C3CC(C(O3)COP(=O)(O)O)O)N"                                                                                                    
0DA InChI            InChI                1.03  "InChI=1S/C10H14N5O6P/c11-9-8-10(13-3-12-9)15(4-14-8)7-1-5(16)6(21-7)2-20-22(17,18)19/h3-7,16H,1-2H2,(H2,11,12,13)(H2,17,18,19)/t5-,6+,7+/m1/s1" 
0DA InChIKey         InChI                1.03  KHWCHTKSEGGWEX-VQVTYTSYSA-N                                                                                                                      
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
0DA "SYSTEMATIC NAME" ACDLabs              12.01 "9-(2-deoxy-5-O-phosphono-beta-L-erythro-pentofuranosyl)-9H-purin-6-amine"            
0DA "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.0 "[(2S,3R,5S)-5-(6-aminopurin-9-yl)-3-hydroxy-oxolan-2-yl]methyl dihydrogen phosphate" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
0DA "Create component"     2009-07-27 RCSB 
0DA "Modify aromatic_flag" 2011-06-04 RCSB 
0DA "Modify descriptor"    2011-06-04 RCSB 
0DA "Initial release"      2015-05-06 RCSB 
# 
