data_XT9
# 
_chem_comp.id                                    XT9 
_chem_comp.name                                  6beta-amino-17-propyl-5alpha,9alpha,13alpha-4,5-epoxymorphinan-3,14-diol 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C19 H26 N2 O3" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2022-12-07 
_chem_comp.pdbx_modified_date                    2024-10-02 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        330.421 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     XT9 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        8FEG 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
_chem_comp.pdbx_pcm                              Y 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
XT9 C29 C1  C 0 1 N N R N N N 118.569 133.345 94.640  -1.458 -2.652 -0.615 C29 XT9 1  
XT9 C30 C2  C 0 1 N N N N N N 117.587 132.344 95.487  -0.509 -3.276 0.429  C30 XT9 2  
XT9 C31 C3  C 0 1 N N N N N N 117.795 132.296 96.983  0.748  -2.453 0.718  C31 XT9 3  
XT9 C32 C4  C 0 1 N N R N N N 119.871 133.580 95.184  -1.784 -1.260 -0.146 C32 XT9 4  
XT9 C33 C5  C 0 1 N N R N N N 120.250 132.799 96.452  -0.423 -0.546 -0.120 C33 XT9 5  
XT9 C34 C6  C 0 1 N N S N N N 119.118 132.867 97.495  0.381  -1.012 1.097  C34 XT9 6  
XT9 C36 C7  C 0 1 N N S N N N 119.614 132.285 98.929  1.563  -0.050 1.159  C36 XT9 7  
XT9 C37 C8  C 0 1 N N N N N N 121.092 133.099 99.399  1.163  1.409  1.365  C37 XT9 8  
XT9 C38 C9  C 0 1 N N N N N N 120.737 131.207 96.496  0.384  -0.722 -1.391 C38 XT9 9  
XT9 C39 C10 C 0 1 N N N N N N 120.754 130.582 98.032  1.646  0.147  -1.276 C39 XT9 10 
XT9 C41 C11 C 0 1 N N N N N N 119.853 130.498 100.078 3.619  0.585  0.054  C41 XT9 11 
XT9 C42 C12 C 0 1 N N N N N N 119.511 128.981 100.040 4.576  0.174  -1.068 C42 XT9 12 
XT9 C43 C13 C 0 1 N N N N N N 119.367 128.493 101.271 5.869  0.984  -0.958 C43 XT9 13 
XT9 C44 C14 C 0 1 Y N N N N N 121.432 133.498 96.789  -0.862 0.858  0.081  C44 XT9 14 
XT9 C45 C15 C 0 1 Y N N N N N 121.915 133.714 98.006  -0.132 1.816  0.745  C45 XT9 15 
XT9 C46 C16 C 0 1 Y N N N N N 123.149 134.449 98.110  -0.746 3.053  0.787  C46 XT9 16 
XT9 C47 C17 C 0 1 Y N N N N N 123.783 134.920 96.945  -2.010 3.214  0.236  C47 XT9 17 
XT9 C48 C18 C 0 1 Y N N N N N 123.224 134.669 95.701  -2.753 2.195  -0.362 C48 XT9 18 
XT9 C50 C19 C 0 1 Y N N N N N 122.004 133.929 95.627  -2.156 0.937  -0.426 C50 XT9 19 
XT9 N28 N1  N 0 1 N N N Y Y N 117.881 134.686 94.674  -2.689 -3.448 -0.711 N28 XT9 20 
XT9 N40 N2  N 0 1 N N N N N N 119.753 131.032 98.859  2.378  -0.194 -0.052 N40 XT9 21 
XT9 O35 O1  O 0 1 N N N N N N 118.875 134.233 97.741  -0.405 -0.973 2.290  O35 XT9 22 
XT9 O49 O2  O 0 1 N N N N N N 123.847 135.138 94.527  -4.000 2.418  -0.858 O49 XT9 23 
XT9 O51 O3  O 0 1 N N N N N N 121.095 133.479 94.489  -2.569 -0.303 -0.837 O51 XT9 24 
XT9 H1  H1  H 0 1 N N N N N N 118.630 132.978 93.605  -0.967 -2.610 -1.587 H1  XT9 25 
XT9 H2  H2  H 0 1 N N N N N N 116.550 132.662 95.305  -1.059 -3.406 1.361  H2  XT9 26 
XT9 H3  H3  H 0 1 N N N N N N 117.733 131.326 95.097  -0.203 -4.260 0.073  H3  XT9 27 
XT9 H4  H4  H 0 1 N N N N N N 116.979 132.863 97.455  1.295  -2.911 1.542  H4  XT9 28 
XT9 H5  H5  H 0 1 N N N N N N 117.739 131.243 97.297  1.380  -2.440 -0.169 H5  XT9 29 
XT9 H6  H6  H 0 1 N N N N N N 119.836 134.623 95.531  -2.150 -1.318 0.879  H6  XT9 30 
XT9 H7  H7  H 0 1 N N N N N N 118.860 132.578 99.675  2.189  -0.346 2.001  H7  XT9 31 
XT9 H8  H8  H 0 1 N N N N N N 121.747 132.386 99.921  1.104  1.598  2.437  H8  XT9 32 
XT9 H9  H9  H 0 1 N N N N N N 120.847 133.934 100.073 1.950  2.040  0.952  H9  XT9 33 
XT9 H10 H10 H 0 1 N N N N N N 120.046 130.611 95.882  0.667  -1.769 -1.505 H10 XT9 34 
XT9 H11 H11 H 0 1 N N N N N N 121.752 131.138 96.077  -0.206 -0.403 -2.250 H11 XT9 35 
XT9 H12 H12 H 0 1 N N N N N N 120.666 129.488 97.955  2.286  -0.029 -2.141 H12 XT9 36 
XT9 H13 H13 H 0 1 N N N N N N 121.718 130.840 98.494  1.361  1.198  -1.247 H13 XT9 37 
XT9 H14 H14 H 0 1 N N N N N N 120.881 130.628 100.446 4.088  0.393  1.019  H14 XT9 38 
XT9 H15 H15 H 0 1 N N N N N N 119.153 131.010 100.755 3.391  1.647  -0.035 H15 XT9 39 
XT9 H16 H16 H 0 1 N N N N N N 118.573 128.838 99.484  4.804  -0.888 -0.980 H16 XT9 40 
XT9 H17 H17 H 0 1 N N N N N N 120.324 128.442 99.532  4.107  0.366  -2.033 H17 XT9 41 
XT9 H18 H18 H 0 1 N N N N N N 119.126 127.421 101.215 5.640  2.046  -1.046 H18 XT9 42 
XT9 H19 H19 H 0 1 N N N N N N 120.304 128.630 101.831 6.337  0.793  0.007  H19 XT9 43 
XT9 H20 H20 H 0 1 N N N N N N 118.552 129.026 101.783 6.550  0.692  -1.757 H20 XT9 44 
XT9 H21 H21 H 0 1 N N N N N N 123.587 134.638 99.079  -0.244 3.891  1.248  H21 XT9 45 
XT9 H22 H22 H 0 1 N N N N N N 124.705 135.477 97.020  -2.450 4.200  0.273  H22 XT9 46 
XT9 H23 H23 H 0 1 N N N Y Y N 116.956 134.596 94.304  -2.490 -4.386 -1.025 H23 XT9 47 
XT9 H24 H24 H 0 1 N Y N Y Y N 117.832 135.012 95.618  -3.183 -3.458 0.169  H24 XT9 48 
XT9 H27 H27 H 0 1 N N N N N N 118.180 134.321 98.382  0.037  -1.350 3.064  H27 XT9 49 
XT9 H28 H28 H 0 1 N N N N N N 124.641 135.606 94.755  -4.011 2.688  -1.787 H28 XT9 50 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
XT9 O51 C32 SING N N 1  
XT9 O51 C50 SING N N 2  
XT9 O49 C48 SING N N 3  
XT9 C29 N28 SING N N 4  
XT9 C29 C32 SING N N 5  
XT9 C29 C30 SING N N 6  
XT9 C32 C33 SING N N 7  
XT9 C30 C31 SING N N 8  
XT9 C50 C48 DOUB Y N 9  
XT9 C50 C44 SING Y N 10 
XT9 C48 C47 SING Y N 11 
XT9 C33 C38 SING N N 12 
XT9 C33 C44 SING N N 13 
XT9 C33 C34 SING N N 14 
XT9 C38 C39 SING N N 15 
XT9 C44 C45 DOUB Y N 16 
XT9 C47 C46 DOUB Y N 17 
XT9 C31 C34 SING N N 18 
XT9 C34 O35 SING N N 19 
XT9 C34 C36 SING N N 20 
XT9 C45 C46 SING Y N 21 
XT9 C45 C37 SING N N 22 
XT9 C39 N40 SING N N 23 
XT9 N40 C36 SING N N 24 
XT9 N40 C41 SING N N 25 
XT9 C36 C37 SING N N 26 
XT9 C42 C41 SING N N 27 
XT9 C42 C43 SING N N 28 
XT9 C29 H1  SING N N 29 
XT9 C30 H2  SING N N 30 
XT9 C30 H3  SING N N 31 
XT9 C31 H4  SING N N 32 
XT9 C31 H5  SING N N 33 
XT9 C32 H6  SING N N 34 
XT9 C36 H7  SING N N 35 
XT9 C37 H8  SING N N 36 
XT9 C37 H9  SING N N 37 
XT9 C38 H10 SING N N 38 
XT9 C38 H11 SING N N 39 
XT9 C39 H12 SING N N 40 
XT9 C39 H13 SING N N 41 
XT9 C41 H14 SING N N 42 
XT9 C41 H15 SING N N 43 
XT9 C42 H16 SING N N 44 
XT9 C42 H17 SING N N 45 
XT9 C43 H18 SING N N 46 
XT9 C43 H19 SING N N 47 
XT9 C43 H20 SING N N 48 
XT9 C46 H21 SING N N 49 
XT9 C47 H22 SING N N 50 
XT9 N28 H23 SING N N 51 
XT9 N28 H24 SING N N 52 
XT9 O35 H27 SING N N 53 
XT9 O49 H28 SING N N 54 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
XT9 SMILES           ACDLabs              12.01 "Oc1ccc2CC3N(CCC45C(Oc1c24)C(N)CCC35O)CCC"                                                                                                                           
XT9 InChI            InChI                1.06  "InChI=1S/C19H26N2O3/c1-2-8-21-9-7-18-15-11-3-4-13(22)16(15)24-17(18)12(20)5-6-19(18,23)14(21)10-11/h3-4,12,14,17,22-23H,2,5-10,20H2,1H3/t12-,14+,17+,18-,19-/m1/s1" 
XT9 InChIKey         InChI                1.06  SZCSIOFISXRVGM-UBDCPRGSSA-N                                                                                                                                          
XT9 SMILES_CANONICAL CACTVS               3.385 "CCCN1CC[C@@]23[C@H]4Oc5c(O)ccc(C[C@H]1[C@]2(O)CC[C@H]4N)c35"                                                                                                        
XT9 SMILES           CACTVS               3.385 "CCCN1CC[C]23[CH]4Oc5c(O)ccc(C[CH]1[C]2(O)CC[CH]4N)c35"                                                                                                              
XT9 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CCCN1CC[C@@]23c4c5ccc(c4O[C@H]2[C@@H](CC[C@]3([C@@H]1C5)O)N)O"                                                                                                      
XT9 SMILES           "OpenEye OEToolkits" 2.0.7 "CCCN1CCC23c4c5ccc(c4OC2C(CCC3(C1C5)O)N)O"                                                                                                                           
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
XT9 "SYSTEMATIC NAME" ACDLabs              12.01 6beta-amino-17-propyl-5alpha,9alpha,13alpha-4,5-epoxymorphinan-3,14-diol                                                                              
XT9 "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "(4~{S},4~{a}~{S},7~{R},7~{a}~{R},12~{b}~{R})-7-azanyl-3-propyl-1,2,4,5,6,7,7~{a},13-octahydro-4,12-methanobenzofuro[3,2-e]isoquinoline-4~{a},9-diol" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
XT9 "Create component" 2022-12-07 RCSB 
XT9 "Initial release"  2023-12-06 RCSB 
XT9 "Modify PCM"       2024-09-27 PDBE 
XT9 "Modify backbone"  2024-10-02 PDBE 
# 
_pdbx_chem_comp_pcm.pcm_id                             1 
_pdbx_chem_comp_pcm.comp_id                            XT9 
_pdbx_chem_comp_pcm.modified_residue_id                ? 
_pdbx_chem_comp_pcm.type                               None 
_pdbx_chem_comp_pcm.category                           "Non-standard residue" 
_pdbx_chem_comp_pcm.position                           "Amino-acid side chain and backbone" 
_pdbx_chem_comp_pcm.polypeptide_position               C-terminal 
_pdbx_chem_comp_pcm.comp_id_linking_atom               ? 
_pdbx_chem_comp_pcm.modified_residue_id_linking_atom   ? 
_pdbx_chem_comp_pcm.uniprot_specific_ptm_accession     ? 
_pdbx_chem_comp_pcm.uniprot_generic_ptm_accession      ? 
# 
