data_XG9
# 
_chem_comp.id                                    XG9 
_chem_comp.name                                  "4-[(2-tert-butyl-4-chloro-5-methylphenoxy)methyl]pyrimidine" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C16 H19 Cl N2 O" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2023-06-06 
_chem_comp.pdbx_modified_date                    2024-12-13 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        290.788 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     XG9 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        7G6I 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
_chem_comp.pdbx_pcm                              ? 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
XG9 C10  C1  C  0 1 Y N N N N N -11.376 4.500  43.274 3.228  -0.511 -0.001 C10  XG9 1  
XG9 C11  C2  C  0 1 Y N N N N N -12.097 4.030  44.391 2.399  -1.619 0.002  C11  XG9 2  
XG9 C13  C3  C  0 1 Y N N N N N -12.715 6.324  44.759 0.481  -0.182 -0.004 C13  XG9 3  
XG9 C15  C4  C  0 1 N N N N N N -12.016 8.228  43.234 0.723  2.314  -0.002 C15  XG9 4  
XG9 C16  C5  C  0 1 N N N N N N -11.053 8.524  42.072 1.849  3.349  0.008  C16  XG9 5  
XG9 C17  C6  C  0 1 N N N N N N -13.420 8.588  42.697 -0.152 2.500  1.240  C17  XG9 6  
XG9 C18  C7  C  0 1 N N N N N N -12.146 2.604  44.825 2.994  -3.004 0.007  C18  XG9 7  
XG9 C20  C8  C  0 1 N N N N N N -11.601 9.100  44.427 -0.130 2.500  -1.258 C20  XG9 8  
XG9 C1   C9  C  0 1 Y N N N N N -12.789 8.888  48.024 -3.508 0.499  0.008  C1   XG9 9  
XG9 C2   C10 C  0 1 Y N N N N N -13.915 8.171  47.623 -3.124 -0.833 -0.003 C2   XG9 10 
XG9 N3   N1  N  0 1 Y N N N N N -15.233 8.538  47.968 -4.057 -1.771 -0.009 N3   XG9 11 
XG9 C4   C11 C  0 1 Y N N N N N -15.299 9.676  48.728 -5.335 -1.453 -0.005 C4   XG9 12 
XG9 N5   N2  N  0 1 Y N N N N N -14.233 10.431 49.161 -5.738 -0.198 0.006  N5   XG9 13 
XG9 C6   C12 C  0 1 Y N N N N N -12.997 10.014 48.801 -4.862 0.795  0.013  C6   XG9 14 
XG9 C7   C13 C  0 1 N N N N N N -13.816 6.903  46.783 -1.664 -1.207 -0.008 C7   XG9 15 
XG9 O8   O1  O  0 1 N N N N N N -13.366 7.291  45.463 -0.868 -0.020 -0.000 O8   XG9 16 
XG9 C9   C14 C  0 1 Y N N N N N -11.328 5.824  42.895 2.685  0.761  -0.001 C9   XG9 17 
XG9 C12  C15 C  0 1 Y N N N N N -12.764 4.981  45.136 1.028  -1.457 0.001  C12  XG9 18 
XG9 C14  C16 C  0 1 Y N N N N N -12.016 6.789  43.637 1.314  0.928  0.004  C14  XG9 19 
XG9 CL19 CL1 CL 0 0 N N N N N N -10.490 3.405  42.285 4.952  -0.718 0.002  CL19 XG9 20 
XG9 H28  H1  H  0 1 N N N N N N -11.097 9.594  41.822 2.457  3.217  0.904  H28  XG9 21 
XG9 H30  H2  H  0 1 N N N N N N -10.028 8.259  42.369 2.472  3.217  -0.876 H30  XG9 22 
XG9 H29  H3  H  0 1 N N N N N N -11.345 7.930  41.193 1.422  4.352  0.005  H29  XG9 23 
XG9 H31  H4  H  0 1 N N N N N N -13.438 9.646  42.395 -0.580 3.503  1.236  H31  XG9 24 
XG9 H32  H5  H  0 1 N N N N N N -13.654 7.955  41.828 -0.955 1.763  1.233  H32  XG9 25 
XG9 H33  H6  H  0 1 N N N N N N -14.168 8.419  43.485 0.455  2.368  2.135  H33  XG9 26 
XG9 H34  H7  H  0 1 N N N N N N -11.316 2.403  45.519 3.136  -3.334 1.036  H34  XG9 27 
XG9 H35  H8  H  0 1 N N N N N N -13.103 2.408  45.331 2.319  -3.691 -0.505 H35  XG9 28 
XG9 H36  H9  H  0 1 N N N N N N -12.055 1.950  43.945 3.955  -2.989 -0.506 H36  XG9 29 
XG9 H38  H10 H  0 1 N N N N N N -11.602 10.158 44.126 0.493  2.368  -2.143 H38  XG9 30 
XG9 H39  H11 H  0 1 N N N N N N -12.312 8.953  45.253 -0.933 1.763  -1.266 H39  XG9 31 
XG9 H37  H12 H  0 1 N N N N N N -10.591 8.814  44.757 -0.557 3.503  -1.262 H37  XG9 32 
XG9 H21  H13 H  0 1 N N N N N N -11.794 8.577  47.740 -2.770 1.287  0.018  H21  XG9 33 
XG9 H22  H14 H  0 1 N N N N N N -16.284 10.014 49.015 -6.074 -2.241 -0.011 H22  XG9 34 
XG9 H23  H15 H  0 1 N N N N N N -12.140 10.582 49.133 -5.198 1.821  0.022  H23  XG9 35 
XG9 H25  H16 H  0 1 N N N N N N -13.095 6.207  47.236 -1.438 -1.802 0.877  H25  XG9 36 
XG9 H24  H17 H  0 1 N N N N N N -14.801 6.418  46.717 -1.441 -1.787 -0.904 H24  XG9 37 
XG9 H26  H18 H  0 1 N N N N N N -10.759 6.116  42.025 3.334  1.625  -0.003 H26  XG9 38 
XG9 H27  H19 H  0 1 N N N N N N -13.324 4.686  46.011 0.381  -2.322 0.003  H27  XG9 39 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
XG9 C1  C2   DOUB Y N 1  
XG9 C1  C6   SING Y N 2  
XG9 C2  N3   SING Y N 3  
XG9 C2  C7   SING N N 4  
XG9 N3  C4   DOUB Y N 5  
XG9 C4  N5   SING Y N 6  
XG9 N5  C6   DOUB Y N 7  
XG9 C7  O8   SING N N 8  
XG9 O8  C13  SING N N 9  
XG9 C9  C10  DOUB Y N 10 
XG9 C9  C14  SING Y N 11 
XG9 C10 C11  SING Y N 12 
XG9 C10 CL19 SING N N 13 
XG9 C11 C12  DOUB Y N 14 
XG9 C11 C18  SING N N 15 
XG9 C12 C13  SING Y N 16 
XG9 C13 C14  DOUB Y N 17 
XG9 C14 C15  SING N N 18 
XG9 C15 C16  SING N N 19 
XG9 C15 C17  SING N N 20 
XG9 C15 C20  SING N N 21 
XG9 C16 H28  SING N N 22 
XG9 C16 H30  SING N N 23 
XG9 C16 H29  SING N N 24 
XG9 C17 H31  SING N N 25 
XG9 C17 H32  SING N N 26 
XG9 C17 H33  SING N N 27 
XG9 C18 H34  SING N N 28 
XG9 C18 H35  SING N N 29 
XG9 C18 H36  SING N N 30 
XG9 C20 H38  SING N N 31 
XG9 C20 H39  SING N N 32 
XG9 C20 H37  SING N N 33 
XG9 C1  H21  SING N N 34 
XG9 C4  H22  SING N N 35 
XG9 C6  H23  SING N N 36 
XG9 C7  H25  SING N N 37 
XG9 C7  H24  SING N N 38 
XG9 C9  H26  SING N N 39 
XG9 C12 H27  SING N N 40 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
XG9 SMILES           ACDLabs              12.01 "CC(C)(C)c1cc(Cl)c(C)cc1OCc1ccncn1"                                                                 
XG9 InChI            InChI                1.06  "InChI=1S/C16H19ClN2O/c1-11-7-15(13(8-14(11)17)16(2,3)4)20-9-12-5-6-18-10-19-12/h5-8,10H,9H2,1-4H3" 
XG9 InChIKey         InChI                1.06  PQGHKSKSASEMKX-UHFFFAOYSA-N                                                                         
XG9 SMILES_CANONICAL CACTVS               3.385 "Cc1cc(OCc2ccncn2)c(cc1Cl)C(C)(C)C"                                                                 
XG9 SMILES           CACTVS               3.385 "Cc1cc(OCc2ccncn2)c(cc1Cl)C(C)(C)C"                                                                 
XG9 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "Cc1cc(c(cc1Cl)C(C)(C)C)OCc2ccncn2"                                                                 
XG9 SMILES           "OpenEye OEToolkits" 2.0.7 "Cc1cc(c(cc1Cl)C(C)(C)C)OCc2ccncn2"                                                                 
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
XG9 "SYSTEMATIC NAME" ACDLabs              12.01 "4-[(2-tert-butyl-4-chloro-5-methylphenoxy)methyl]pyrimidine"        
XG9 "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "4-[(2-~{tert}-butyl-4-chloranyl-5-methyl-phenoxy)methyl]pyrimidine" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
XG9 "Create component" 2023-06-06 RCSB 
XG9 "Initial release"  2024-12-18 RCSB 
# 
