data_WH9
# 
_chem_comp.id                                    WH9 
_chem_comp.name                                  "5,6-dichloro-1-{1-[(4-chlorophenyl)methyl]piperidin-4-yl}-1,3-dihydro-2H-benzimidazol-2-one" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C19 H18 Cl3 N3 O" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2022-09-09 
_chem_comp.pdbx_modified_date                    2022-11-04 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        410.725 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     WH9 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        8EFL 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
WH9 C01 C1  C  0 1 Y N N 95.321  108.443 118.685 4.913  -1.516 0.383  C01 WH9 1  
WH9 C02 C2  C  0 1 Y N N 94.643  109.325 119.507 5.541  -0.292 0.523  C02 WH9 2  
WH9 C03 C3  C  0 1 Y N N 96.503  107.882 119.125 3.566  -1.568 0.063  C03 WH9 3  
WH9 C04 C4  C  0 1 Y N N 95.153  109.640 120.755 4.827  0.883  0.343  C04 WH9 4  
WH9 C05 C5  C  0 1 Y N N 97.026  108.183 120.364 2.847  -0.384 -0.118 C05 WH9 5  
WH9 C06 C6  C  0 1 Y N N 96.343  109.072 121.192 3.483  0.839  0.023  C06 WH9 6  
WH9 C07 C7  C  0 1 N N N 98.343  106.791 119.369 1.465  -2.095 -0.434 C07 WH9 7  
WH9 C08 C8  C  0 1 N N N 99.126  107.444 121.611 0.431  0.170  -0.698 C08 WH9 8  
WH9 C09 C9  C  0 1 N N N 99.706  108.828 121.946 -0.108 -0.080 -2.109 C09 WH9 9  
WH9 C10 C10 C  0 1 N N N 98.517  106.817 122.870 -0.690 -0.066 0.317  C10 WH9 10 
WH9 C11 C11 C  0 1 N N N 100.764 108.698 123.049 -1.302 0.842  -2.364 C11 WH9 11 
WH9 C12 C12 C  0 1 N N N 99.622  106.653 123.924 -1.868 0.855  -0.008 C12 WH9 12 
WH9 C13 C13 C  0 1 N N N 101.324 107.824 125.312 -3.564 1.346  -1.664 C13 WH9 13 
WH9 C14 C14 C  0 1 Y N N 103.553 107.098 124.266 -4.891 1.462  0.455  C14 WH9 14 
WH9 C15 C15 C  0 1 Y N N 102.421 105.583 125.744 -5.512 -0.156 -1.198 C15 WH9 15 
WH9 C16 C16 C  0 1 Y N N 103.438 104.654 125.558 -6.548 -0.585 -0.390 C16 WH9 16 
WH9 C17 C17 C  0 1 Y N N 104.565 106.167 124.082 -5.924 1.031  1.265  C17 WH9 17 
WH9 C18 C18 C  0 1 Y N N 102.441 106.810 125.070 -4.687 0.871  -0.778 C18 WH9 18 
WH9 C19 C19 C  0 1 Y N N 104.507 104.948 124.732 -6.753 0.007  0.843  C19 WH9 19 
WH9 N01 N1  N  0 1 N N N 97.330  107.032 118.554 2.671  -2.617 -0.142 N01 WH9 20 
WH9 N02 N2  N  0 1 N N N 98.173  107.485 120.489 1.538  -0.751 -0.427 N02 WH9 21 
WH9 N03 N3  N  0 1 N N N 100.272 107.956 124.243 -2.348 0.577  -1.368 N03 WH9 22 
WH9 O01 O1  O  0 1 N N N 99.241  106.074 119.147 0.461  -2.741 -0.668 O01 WH9 23 
WH9 CL1 CL1 CL 0 0 N N N 105.770 103.801 124.509 -8.051 -0.535 1.861  CL1 WH9 24 
WH9 CL2 CL2 CL 0 0 N N N 94.298  110.737 121.759 5.625  2.414  0.521  CL2 WH9 25 
WH9 CL3 CL3 CL 0 0 N N N 93.165  110.030 118.979 7.228  -0.226 0.925  CL3 WH9 26 
WH9 H1  H1  H  0 1 N N N 94.930  108.196 117.709 5.472  -2.430 0.520  H1  WH9 27 
WH9 H2  H2  H  0 1 N N N 96.736  109.318 122.167 2.930  1.756  -0.116 H2  WH9 28 
WH9 H3  H3  H  0 1 N N N 99.970  106.806 121.310 0.784  1.198  -0.619 H3  WH9 29 
WH9 H4  H4  H  0 1 N N N 100.169 109.257 121.045 0.675  0.128  -2.840 H4  WH9 30 
WH9 H5  H5  H  0 1 N N N 98.897  109.488 122.292 -0.424 -1.119 -2.200 H5  WH9 31 
WH9 H6  H6  H  0 1 N N N 97.725  107.471 123.263 -1.016 -1.105 0.265  H6  WH9 32 
WH9 H7  H7  H  0 1 N N N 98.091  105.833 122.624 -0.324 0.151  1.321  H7  WH9 33 
WH9 H8  H8  H  0 1 N N N 101.634 108.165 122.639 -0.982 1.881  -2.287 H8  WH9 34 
WH9 H9  H9  H  0 1 N N N 101.068 109.707 123.364 -1.697 0.657  -3.363 H9  WH9 35 
WH9 H10 H10 H  0 1 N N N 99.181  106.240 124.843 -2.674 0.680  0.704  H10 WH9 36 
WH9 H11 H11 H  0 1 N N N 100.383 105.959 123.538 -1.545 1.894  0.058  H11 WH9 37 
WH9 H12 H12 H  0 1 N N N 101.794 108.811 125.438 -3.840 1.201  -2.709 H12 WH9 38 
WH9 H13 H13 H  0 1 N N N 100.815 107.539 126.244 -3.379 2.404  -1.481 H13 WH9 39 
WH9 H14 H14 H  0 1 N N N 103.623 108.061 123.782 -4.247 2.265  0.782  H14 WH9 40 
WH9 H15 H15 H  0 1 N N N 101.606 105.356 126.416 -5.351 -0.618 -2.161 H15 WH9 41 
WH9 H16 H16 H  0 1 N N N 103.393 103.699 126.061 -7.198 -1.381 -0.722 H16 WH9 42 
WH9 H17 H17 H  0 1 N N N 105.397 106.394 123.432 -6.084 1.493  2.228  H17 WH9 43 
WH9 H18 H18 H  0 1 N N N 97.211  106.631 117.646 2.882  -3.562 -0.084 H18 WH9 44 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
WH9 N01 C03 SING N N 1  
WH9 N01 C07 SING N N 2  
WH9 C01 C03 DOUB Y N 3  
WH9 C01 C02 SING Y N 4  
WH9 CL3 C02 SING N N 5  
WH9 C03 C05 SING Y N 6  
WH9 O01 C07 DOUB N N 7  
WH9 C07 N02 SING N N 8  
WH9 C02 C04 DOUB Y N 9  
WH9 C05 N02 SING N N 10 
WH9 C05 C06 DOUB Y N 11 
WH9 N02 C08 SING N N 12 
WH9 C04 C06 SING Y N 13 
WH9 C04 CL2 SING N N 14 
WH9 C08 C09 SING N N 15 
WH9 C08 C10 SING N N 16 
WH9 C09 C11 SING N N 17 
WH9 C10 C12 SING N N 18 
WH9 C11 N03 SING N N 19 
WH9 C12 N03 SING N N 20 
WH9 C17 C14 DOUB Y N 21 
WH9 C17 C19 SING Y N 22 
WH9 N03 C13 SING N N 23 
WH9 C14 C18 SING Y N 24 
WH9 CL1 C19 SING N N 25 
WH9 C19 C16 DOUB Y N 26 
WH9 C18 C13 SING N N 27 
WH9 C18 C15 DOUB Y N 28 
WH9 C16 C15 SING Y N 29 
WH9 C01 H1  SING N N 30 
WH9 C06 H2  SING N N 31 
WH9 C08 H3  SING N N 32 
WH9 C09 H4  SING N N 33 
WH9 C09 H5  SING N N 34 
WH9 C10 H6  SING N N 35 
WH9 C10 H7  SING N N 36 
WH9 C11 H8  SING N N 37 
WH9 C11 H9  SING N N 38 
WH9 C12 H10 SING N N 39 
WH9 C12 H11 SING N N 40 
WH9 C13 H12 SING N N 41 
WH9 C13 H13 SING N N 42 
WH9 C14 H14 SING N N 43 
WH9 C15 H15 SING N N 44 
WH9 C16 H16 SING N N 45 
WH9 C17 H17 SING N N 46 
WH9 N01 H18 SING N N 47 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
WH9 SMILES           ACDLabs              12.01 "Clc1cc2NC(=O)N(C3CCN(Cc4ccc(Cl)cc4)CC3)c2cc1Cl"                                                                                           
WH9 InChI            InChI                1.06  "InChI=1S/C19H18Cl3N3O/c20-13-3-1-12(2-4-13)11-24-7-5-14(6-8-24)25-18-10-16(22)15(21)9-17(18)23-19(25)26/h1-4,9-10,14H,5-8,11H2,(H,23,26)" 
WH9 InChIKey         InChI                1.06  LAGUDYUGRSQDKS-UHFFFAOYSA-N                                                                                                                
WH9 SMILES_CANONICAL CACTVS               3.385 "Clc1ccc(CN2CCC(CC2)N3C(=O)Nc4cc(Cl)c(Cl)cc34)cc1"                                                                                         
WH9 SMILES           CACTVS               3.385 "Clc1ccc(CN2CCC(CC2)N3C(=O)Nc4cc(Cl)c(Cl)cc34)cc1"                                                                                         
WH9 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "c1cc(ccc1CN2CCC(CC2)N3c4cc(c(cc4NC3=O)Cl)Cl)Cl"                                                                                           
WH9 SMILES           "OpenEye OEToolkits" 2.0.7 "c1cc(ccc1CN2CCC(CC2)N3c4cc(c(cc4NC3=O)Cl)Cl)Cl"                                                                                           
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
WH9 "SYSTEMATIC NAME" ACDLabs              12.01 "5,6-dichloro-1-{1-[(4-chlorophenyl)methyl]piperidin-4-yl}-1,3-dihydro-2H-benzimidazol-2-one" 
WH9 "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "5,6-bis(chloranyl)-3-[1-[(4-chlorophenyl)methyl]piperidin-4-yl]-1~{H}-benzimidazol-2-one"    
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
WH9 "Create component" 2022-09-09 RCSB 
WH9 "Initial release"  2022-11-09 RCSB 
# 
