data_UP9
# 
_chem_comp.id                                    UP9 
_chem_comp.name                                  "(2S)-6-fluoro-5-[(3S)-3-(3-methyl-2-oxoimidazolidin-1-yl)piperidin-1-yl]-2-(4-methylpiperazine-1-carbonyl)-2,3,4,9-tetrahydro-1H-carbazole-8-carboxamide" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C28 H38 F N7 O3" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2023-09-06 
_chem_comp.pdbx_modified_date                    2024-01-26 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        539.645 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     UP9 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        8U2E 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
UP9 C14  C1  C 0 1 N N N N N N 9.862  -7.590 -11.293 0.085  -5.185 -0.796 C14  UP9 1  
UP9 C11  C2  C 0 1 N N R N N N 9.537  -7.050 -19.515 -4.798 0.641  1.014  C11  UP9 2  
UP9 C10  C3  C 0 1 N N N N N N 8.682  -5.826 -19.885 -4.304 1.229  2.339  C10  UP9 3  
UP9 C12  C4  C 0 1 N N N N N N 9.219  -7.315 -17.998 -4.079 -0.684 0.750  C12  UP9 4  
UP9 C01  C5  C 0 1 Y N N N N N 10.983 -6.832 -13.488 0.079  -2.722 -0.407 C01  UP9 5  
UP9 C02  C6  C 0 1 Y N N N N N 10.957 -6.486 -14.877 -0.600 -1.550 -0.037 C02  UP9 6  
UP9 C03  C7  C 0 1 Y N N N N N 9.711  -6.516 -15.613 -1.955 -1.611 0.324  C03  UP9 7  
UP9 C04  C8  C 0 1 Y N N N N N 8.607  -6.927 -14.809 -2.621 -2.831 0.314  C04  UP9 8  
UP9 C05  C9  C 0 1 Y N N N N N 8.650  -7.265 -13.420 -1.959 -3.987 -0.049 C05  UP9 9  
UP9 C06  C10 C 0 1 Y N N N N N 9.855  -7.224 -12.716 -0.611 -3.948 -0.411 C06  UP9 10 
UP9 C08  C11 C 0 1 N N N N N N 8.805  -4.996 -17.451 -2.125 0.067  1.969  C08  UP9 11 
UP9 C09  C12 C 0 1 N N N N N N 8.985  -4.653 -18.954 -2.785 1.415  2.270  C09  UP9 12 
UP9 C18  C13 C 0 1 Y N N N N N 13.119 -6.311 -14.078 1.539  -1.022 -0.540 C18  UP9 13 
UP9 C19  C14 C 0 1 Y N N N N N 12.317 -6.172 -15.198 0.378  -0.472 -0.137 C19  UP9 14 
UP9 C20  C15 C 0 1 N N N N N N 14.583 -6.070 -14.002 2.808  -0.231 -0.764 C20  UP9 15 
UP9 C21  C16 C 0 1 N N S N N N 15.181 -5.311 -15.220 2.663  1.128  -0.071 C21  UP9 16 
UP9 C22  C17 C 0 1 N N N N N N 14.460 -5.785 -16.500 1.337  1.774  -0.484 C22  UP9 17 
UP9 C23  C18 C 0 1 N N N N N N 12.932 -5.748 -16.462 0.176  0.994  0.145  C23  UP9 18 
UP9 C24  C19 C 0 1 N N N N N N 16.743 -5.528 -15.389 3.805  2.023  -0.477 C24  UP9 19 
UP9 C27  C20 C 0 1 N N N N N N 17.452 -3.303 -14.194 6.146  2.729  -0.278 C27  UP9 20 
UP9 C28  C21 C 0 1 N N N N N N 18.613 -2.605 -13.333 7.343  1.784  -0.424 C28  UP9 21 
UP9 C30  C22 C 0 1 N N N N N N 20.092 -4.535 -13.929 6.382  0.197  1.137  C30  UP9 22 
UP9 C31  C23 C 0 1 N N N N N N 19.208 -4.869 -15.143 5.145  1.076  1.347  C31  UP9 23 
UP9 C32  C24 C 0 1 N N N N N N 20.733 -2.301 -14.832 8.778  0.261  0.794  C32  UP9 24 
UP9 C34  C25 C 0 1 N N N N N N 12.108 -7.589 -19.221 -5.044 2.801  -0.206 C34  UP9 25 
UP9 C36  C26 C 0 1 N N N N N N 13.081 -6.272 -21.003 -3.664 2.624  -2.027 C36  UP9 26 
UP9 C37  C27 C 0 1 N N N N N N 11.507 -6.089 -21.021 -3.594 1.328  -1.196 C37  UP9 27 
UP9 C39  C28 C 0 1 N N N N N N 14.681 -7.670 -19.483 -5.042 4.811  -1.681 C39  UP9 28 
UP9 F13  F1  F 0 1 N N N N N N 7.392  -7.016 -15.321 -3.925 -2.886 0.662  F13  UP9 29 
UP9 N07  N1  N 0 1 N N N N N N 9.528  -6.225 -16.990 -2.630 -0.453 0.693  N07  UP9 30 
UP9 N15  N2  N 0 1 N N N N N N 8.789  -8.120 -10.588 -0.578 -6.359 -0.799 N15  UP9 31 
UP9 N17  N3  N 0 1 Y N N N N N 12.308 -6.709 -13.026 1.371  -2.368 -0.710 N17  UP9 32 
UP9 N25  N4  N 0 1 N N N N N N 17.766 -4.621 -14.918 4.985  1.946  0.171  N25  UP9 33 
UP9 N29  N5  N 0 1 N N N N N N 20.094 -3.057 -13.666 7.539  1.049  0.832  N29  UP9 34 
UP9 N33  N6  N 0 1 N N N N N N 10.991 -6.933 -19.885 -4.512 1.579  -0.075 N33  UP9 35 
UP9 N35  N7  N 0 1 N N N N N N 13.324 -7.212 -19.863 -4.620 3.463  -1.291 N35  UP9 36 
UP9 O16  O1  O 0 1 N N N N N N 10.934 -7.445 -10.675 1.258  -5.148 -1.117 O16  UP9 37 
UP9 O26  O2  O 0 1 N N N N N N 17.184 -6.520 -15.954 3.664  2.812  -1.386 O26  UP9 38 
UP9 O38  O3  O 0 1 N N N N N N 12.053 -8.345 -18.256 -5.843 3.264  0.584  O38  UP9 39 
UP9 H111 H1  H 0 0 N N N N N N 9.127  -7.905 -20.073 -5.872 0.467  1.071  H111 UP9 40 
UP9 H102 H2  H 0 0 N N N N N N 7.618  -6.090 -19.799 -4.781 2.194  2.510  H102 UP9 41 
UP9 H101 H3  H 0 0 N N N N N N 8.904  -5.531 -20.921 -4.552 0.550  3.154  H101 UP9 42 
UP9 H121 H4  H 0 0 N N N N N N 9.790  -8.206 -17.698 -4.304 -1.386 1.553  H121 UP9 43 
UP9 H122 H5  H 0 0 N N N N N N 8.142  -7.528 -17.925 -4.418 -1.098 -0.200 H122 UP9 44 
UP9 H051 H6  H 0 0 N N N N N N 7.742  -7.554 -12.911 -2.487 -4.928 -0.052 H051 UP9 45 
UP9 H081 H7  H 0 0 N N N N N N 7.731  -5.140 -17.260 -1.044 0.199  1.906  H081 UP9 46 
UP9 H082 H8  H 0 0 N N N N N N 9.171  -4.143 -16.860 -2.358 -0.638 2.767  H082 UP9 47 
UP9 H092 H9  H 0 0 N N N N N N 8.307  -3.824 -19.206 -2.540 2.124  1.480  H092 UP9 48 
UP9 H091 H10 H 0 0 N N N N N N 10.026 -4.338 -19.117 -2.421 1.793  3.226  H091 UP9 49 
UP9 H202 H11 H 0 0 N N N N N N 14.786 -5.479 -13.097 3.655  -0.770 -0.339 H202 UP9 50 
UP9 H201 H12 H 0 0 N N N N N N 15.087 -7.045 -13.925 2.963  -0.083 -1.832 H201 UP9 51 
UP9 H211 H13 H 0 0 N N N N N N 14.996 -4.235 -15.088 2.678  0.988  1.010  H211 UP9 52 
UP9 H222 H14 H 0 0 N N N N N N 14.792 -5.144 -17.330 1.312  2.807  -0.136 H222 UP9 53 
UP9 H221 H15 H 0 0 N N N N N N 14.767 -6.823 -16.694 1.245  1.753  -1.569 H221 UP9 54 
UP9 H231 H16 H 0 0 N N N N N N 12.558 -6.408 -17.258 -0.767 1.325  -0.293 H231 UP9 55 
UP9 H232 H17 H 0 0 N N N N N N 12.614 -4.714 -16.663 0.162  1.162  1.222  H232 UP9 56 
UP9 H271 H18 H 0 0 N N N N N N 17.136 -2.579 -14.960 6.375  3.500  0.458  H271 UP9 57 
UP9 H272 H19 H 0 0 N N N N N N 16.614 -3.501 -13.509 5.927  3.195  -1.239 H272 UP9 58 
UP9 H281 H20 H 0 0 N N N N N N 18.548 -1.519 -13.498 7.153  1.079  -1.233 H281 UP9 59 
UP9 H282 H21 H 0 0 N N N N N N 18.424 -2.827 -12.272 8.238  2.364  -0.650 H282 UP9 60 
UP9 H301 H22 H 0 0 N N N N N N 21.121 -4.868 -14.129 6.580  -0.375 2.043  H301 UP9 61 
UP9 H302 H23 H 0 0 N N N N N N 19.703 -5.059 -13.044 6.205  -0.487 0.306  H302 UP9 62 
UP9 H312 H24 H 0 0 N N N N N N 19.343 -5.933 -15.388 4.262  0.446  1.459  H312 UP9 63 
UP9 H311 H25 H 0 0 N N N N N N 19.538 -4.252 -15.992 5.276  1.685  2.241  H311 UP9 64 
UP9 H321 H26 H 0 0 N N N N N N 21.755 -2.674 -14.996 9.628  0.927  0.642  H321 UP9 65 
UP9 H322 H27 H 0 0 N N N N N N 20.135 -2.458 -15.742 8.898  -0.274 1.736  H322 UP9 66 
UP9 H323 H28 H 0 0 N N N N N N 20.768 -1.227 -14.597 8.727  -0.456 -0.026 H323 UP9 67 
UP9 H362 H29 H 0 0 N N N N N N 13.584 -5.309 -20.830 -2.685 3.100  -2.075 H362 UP9 68 
UP9 H361 H30 H 0 0 N N N N N N 13.435 -6.706 -21.950 -4.036 2.415  -3.030 H361 UP9 69 
UP9 H371 H31 H 0 0 N N N N N N 11.090 -6.436 -21.978 -3.934 0.476  -1.786 H371 UP9 70 
UP9 H372 H32 H 0 0 N N N N N N 11.241 -5.033 -20.867 -2.580 1.160  -0.834 H372 UP9 71 
UP9 H391 H33 H 0 0 N N N N N N 15.424 -7.215 -20.155 -5.686 5.228  -0.907 H391 UP9 72 
UP9 H392 H34 H 0 0 N N N N N N 14.892 -7.369 -18.446 -4.165 5.445  -1.804 H392 UP9 73 
UP9 H393 H35 H 0 0 N N N N N N 14.734 -8.766 -19.565 -5.590 4.762  -2.622 H393 UP9 74 
UP9 H152 H36 H 0 0 N N N N N N 8.897  -8.367 -9.625  -0.120 -7.174 -1.057 H152 UP9 75 
UP9 H151 H37 H 0 0 N N N N N N 7.909  -8.254 -11.043 -1.513 -6.388 -0.543 H151 UP9 76 
UP9 H171 H38 H 0 0 N N N N N N 12.615 -6.881 -12.090 2.063  -2.984 -0.997 H171 UP9 77 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
UP9 C01 C02  DOUB Y N 1  
UP9 C01 C06  SING Y N 2  
UP9 C01 N17  SING Y N 3  
UP9 C02 C03  SING Y N 4  
UP9 C02 C19  SING Y N 5  
UP9 C03 C04  DOUB Y N 6  
UP9 C03 N07  SING N N 7  
UP9 C04 C05  SING Y N 8  
UP9 C04 F13  SING N N 9  
UP9 C05 C06  DOUB Y N 10 
UP9 C06 C14  SING N N 11 
UP9 N07 C08  SING N N 12 
UP9 N07 C12  SING N N 13 
UP9 C08 C09  SING N N 14 
UP9 C09 C10  SING N N 15 
UP9 C10 C11  SING N N 16 
UP9 C11 C12  SING N N 17 
UP9 C11 N33  SING N N 18 
UP9 C14 N15  SING N N 19 
UP9 C14 O16  DOUB N N 20 
UP9 N17 C18  SING Y N 21 
UP9 C18 C19  DOUB Y N 22 
UP9 C18 C20  SING N N 23 
UP9 C19 C23  SING N N 24 
UP9 C20 C21  SING N N 25 
UP9 C21 C22  SING N N 26 
UP9 C21 C24  SING N N 27 
UP9 C22 C23  SING N N 28 
UP9 C24 N25  SING N N 29 
UP9 C24 O26  DOUB N N 30 
UP9 N25 C27  SING N N 31 
UP9 N25 C31  SING N N 32 
UP9 C27 C28  SING N N 33 
UP9 C28 N29  SING N N 34 
UP9 N29 C30  SING N N 35 
UP9 N29 C32  SING N N 36 
UP9 C30 C31  SING N N 37 
UP9 N33 C34  SING N N 38 
UP9 N33 C37  SING N N 39 
UP9 C34 N35  SING N N 40 
UP9 C34 O38  DOUB N N 41 
UP9 N35 C36  SING N N 42 
UP9 N35 C39  SING N N 43 
UP9 C36 C37  SING N N 44 
UP9 C11 H111 SING N N 45 
UP9 C10 H102 SING N N 46 
UP9 C10 H101 SING N N 47 
UP9 C12 H121 SING N N 48 
UP9 C12 H122 SING N N 49 
UP9 C05 H051 SING N N 50 
UP9 C08 H081 SING N N 51 
UP9 C08 H082 SING N N 52 
UP9 C09 H092 SING N N 53 
UP9 C09 H091 SING N N 54 
UP9 C20 H202 SING N N 55 
UP9 C20 H201 SING N N 56 
UP9 C21 H211 SING N N 57 
UP9 C22 H222 SING N N 58 
UP9 C22 H221 SING N N 59 
UP9 C23 H231 SING N N 60 
UP9 C23 H232 SING N N 61 
UP9 C27 H271 SING N N 62 
UP9 C27 H272 SING N N 63 
UP9 C28 H281 SING N N 64 
UP9 C28 H282 SING N N 65 
UP9 C30 H301 SING N N 66 
UP9 C30 H302 SING N N 67 
UP9 C31 H312 SING N N 68 
UP9 C31 H311 SING N N 69 
UP9 C32 H321 SING N N 70 
UP9 C32 H322 SING N N 71 
UP9 C32 H323 SING N N 72 
UP9 C36 H362 SING N N 73 
UP9 C36 H361 SING N N 74 
UP9 C37 H371 SING N N 75 
UP9 C37 H372 SING N N 76 
UP9 C39 H391 SING N N 77 
UP9 C39 H392 SING N N 78 
UP9 C39 H393 SING N N 79 
UP9 N15 H152 SING N N 80 
UP9 N15 H151 SING N N 81 
UP9 N17 H171 SING N N 82 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
UP9 SMILES           ACDLabs              12.01 "O=C(N1CCN(C)CC1)C1Cc2[NH]c3c(cc(F)c(N4CCCC(C4)N4CCN(C)C4=O)c3c2CC1)C(N)=O"                                                                                                                                   
UP9 InChI            InChI                1.06  "InChI=1S/C28H38FN7O3/c1-32-8-11-34(12-9-32)27(38)17-5-6-19-22(14-17)31-24-20(26(30)37)15-21(29)25(23(19)24)35-7-3-4-18(16-35)36-13-10-33(2)28(36)39/h15,17-18,31H,3-14,16H2,1-2H3,(H2,30,37)/t17-,18-/m0/s1" 
UP9 InChIKey         InChI                1.06  HAKSZOOIIKBVPT-ROUUACIJSA-N                                                                                                                                                                                   
UP9 SMILES_CANONICAL CACTVS               3.385 "CN1CCN(CC1)C(=O)[C@H]2CCc3c(C2)[nH]c4c(cc(F)c(N5CCC[C@H](C5)N6CCN(C)C6=O)c34)C(N)=O"                                                                                                                         
UP9 SMILES           CACTVS               3.385 "CN1CCN(CC1)C(=O)[CH]2CCc3c(C2)[nH]c4c(cc(F)c(N5CCC[CH](C5)N6CCN(C)C6=O)c34)C(N)=O"                                                                                                                           
UP9 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CN1CCN(CC1)C(=O)[C@H]2CCc3c([nH]c4c3c(c(cc4C(=O)N)F)N5CCC[C@H](C5)N6CCN(C6=O)C)C2"                                                                                                                           
UP9 SMILES           "OpenEye OEToolkits" 2.0.7 "CN1CCN(CC1)C(=O)C2CCc3c([nH]c4c3c(c(cc4C(=O)N)F)N5CCCC(C5)N6CCN(C6=O)C)C2"                                                                                                                                   
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
UP9 "SYSTEMATIC NAME" ACDLabs              12.01 "(2S)-6-fluoro-5-[(3S)-3-(3-methyl-2-oxoimidazolidin-1-yl)piperidin-1-yl]-2-(4-methylpiperazine-1-carbonyl)-2,3,4,9-tetrahydro-1H-carbazole-8-carboxamide"                         
UP9 "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "(7~{S})-3-fluoranyl-4-[(3~{R})-3-(3-methyl-2-oxidanylidene-imidazolidin-1-yl)piperidin-1-yl]-7-(4-methylpiperazin-1-yl)carbonyl-6,7,8,9-tetrahydro-5~{H}-carbazole-1-carboxamide" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
UP9 "Create component" 2023-09-06 RCSB 
UP9 "Initial release"  2024-01-31 RCSB 
# 
