data_RN9
#

_chem_comp.id                                   RN9
_chem_comp.name                                 "3-[3-[[1-[(3~{S})-2,6-bis(oxidanylidene)piperidin-3-yl]-2,5-bis(oxidanylidene)pyrrol-3-yl]amino]phenyl]-~{N}-(3-chloranyl-4-methyl-phenyl)propanamide"
_chem_comp.type                                 non-polymer
_chem_comp.pdbx_type                            HETAIN
_chem_comp.formula                              "C25 H23 Cl N4 O5"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        ?
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2021-02-12
_chem_comp.pdbx_modified_date                   2021-05-28
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       494.927
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    RN9
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       7LPS
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 RCSB
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
RN9  N    N1   N   0  1  N  N  N  61.114  10.628  46.459    6.002   0.403  -0.209  N    RN9   1  
RN9  C    C1   C   0  1  N  N  N  59.960  10.732  47.391    5.653   1.621   0.241  C    RN9   2  
RN9  O    O1   O   0  1  N  N  N  58.815  10.306  47.079    6.415   2.448   0.705  O    RN9   3  
RN9  C1   C2   C   0  1  N  N  S  61.143   9.963  45.162    7.364  -0.135  -0.211  C1   RN9   4  
RN9  C10  C3   C   0  1  Y  N  N  61.170  13.060  52.493   -0.784   1.873   0.156  C10  RN9   5  
RN9  C11  C4   C   0  1  N  N  N  59.887  12.841  53.261   -2.121   1.456   0.713  C11  RN9   6  
RN9  C12  C5   C   0  1  N  N  N  59.472  14.030  54.143   -3.067   1.108  -0.438  C12  RN9   7  
RN9  C13  C6   C   0  1  N  N  N  59.398  15.331  53.381   -4.403   0.691   0.119  C13  RN9   8  
RN9  C14  C7   C   0  1  Y  N  N  60.468  17.598  53.387   -6.672   0.051  -0.206  C14  RN9   9  
RN9  C15  C8   C   0  1  Y  N  N  61.293  18.415  54.151   -7.150   0.743   0.898  C15  RN9  10  
RN9  C16  C9   C   0  1  Y  N  N  61.699  19.645  53.664   -8.405   0.458   1.400  C16  RN9  11  
RN9  C17  C10  C   0  1  Y  N  N  61.303  20.107  52.409   -9.185  -0.515   0.804  C17  RN9  12  
RN9  C18  C11  C   0  1  N  N  N  61.749  21.459  51.915  -10.554  -0.823   1.355  C18  RN9  13  
RN9  C19  C12  C   0  1  Y  N  N  60.474  19.261  51.662   -8.712  -1.207  -0.297  C19  RN9  14  
RN9  C2   C13  C   0  1  N  N  N  60.108  10.708  44.340    7.372  -1.482  -0.885  C2   RN9  15  
RN9  C20  C14  C   0  1  Y  N  N  60.051  18.030  52.131   -7.459  -0.923  -0.807  C20  RN9  16  
RN9  C21  C15  C   0  1  Y  N  N  62.269  13.670  53.083   -0.542   3.203  -0.138  C21  RN9  17  
RN9  C22  C16  C   0  1  Y  N  N  63.437  13.874  52.367    0.683   3.590  -0.650  C22  RN9  18  
RN9  C23  C17  C   0  1  Y  N  N  63.528  13.460  51.049    1.670   2.649  -0.868  C23  RN9  19  
RN9  C24  C18  C   0  1  N  N  N  60.410  11.391  48.482    4.206   1.790   0.082  C24  RN9  20  
RN9  C3   C19  C   0  1  N  N  N  59.140   8.599  43.524    7.008  -2.617   1.144  C3   RN9  21  
RN9  C4   C20  C   0  1  N  N  N  60.265   7.824  44.137    6.980  -1.336   1.935  C4   RN9  22  
RN9  C5   C21  C   0  1  N  N  N  60.830   8.471  45.396    7.855  -0.292   1.232  C5   RN9  23  
RN9  C6   C22  C   0  1  N  N  N  62.187  11.257  47.020    4.912  -0.249  -0.652  C6   RN9  24  
RN9  C7   C23  C   0  1  N  N  N  61.775  11.722  48.257    3.735   0.642  -0.469  C7   RN9  25  
RN9  C8   C24  C   0  1  Y  N  N  62.442  12.844  50.441    1.431   1.312  -0.574  C8   RN9  26  
RN9  C9   C25  C   0  1  Y  N  N  61.269  12.647  51.166    0.200   0.928  -0.055  C9   RN9  27  
RN9  N1   N2   N   0  1  N  N  N  59.185   9.965  43.639    7.192  -2.612  -0.184  N1   RN9  28  
RN9  N2   N3   N   0  1  N  N  N  62.575  12.462  49.082    2.427   0.359  -0.794  N2   RN9  29  
RN9  N3   N4   N   0  1  N  N  N  60.137  16.329  53.925   -5.400   0.337  -0.716  N3   RN9  30  
RN9  O1   O2   O   0  1  N  N  N  58.187   8.056  42.973    6.862  -3.674   1.720  O1   RN9  31  
RN9  O2   O3   O   0  1  N  N  N  60.115  11.933  44.298    7.543  -1.546  -2.083  O2   RN9  32  
RN9  O3   O4   O   0  1  N  N  N  58.734  15.437  52.354   -4.582   0.674   1.318  O3   RN9  33  
RN9  O4   O5   O   0  1  N  N  N  63.289  11.424  46.475    4.892  -1.368  -1.121  O4   RN9  34  
RN9  CL   CL1  CL  0  0  N  N  N  59.972  19.744  50.073   -9.697  -2.424  -1.046  CL   RN9  35  
RN9  H1   H1   H   0  1  N  N  N  62.134  10.063  44.695    8.024   0.545  -0.748  H1   RN9  36  
RN9  H2   H2   H   0  1  N  N  N  59.080  12.649  52.538   -1.991   0.583   1.353  H2   RN9  37  
RN9  H3   H3   H   0  1  N  N  N  60.017  11.961  53.907   -2.543   2.275   1.295  H3   RN9  38  
RN9  H4   H4   H   0  1  N  N  N  58.482  13.819  54.573   -3.196   1.980  -1.079  H4   RN9  39  
RN9  H5   H5   H   0  1  N  N  N  60.208  14.139  54.953   -2.644   0.289  -1.021  H5   RN9  40  
RN9  H6   H6   H   0  1  N  N  N  61.618  18.089  55.128   -6.542   1.503   1.365  H6   RN9  41  
RN9  H7   H7   H   0  1  N  N  N  62.341  20.265  54.273   -8.778   0.997   2.259  H7   RN9  42  
RN9  H8   H8   H   0  1  N  N  N  61.019  22.222  52.224  -11.293  -0.189   0.865  H8   RN9  43  
RN9  H9   H9   H   0  1  N  N  N  62.734  21.699  52.343  -10.793  -1.870   1.168  H9   RN9  44  
RN9  H10  H10  H   0  1  N  N  N  61.820  21.443  50.817  -10.566  -0.633   2.428  H10  RN9  45  
RN9  H11  H11  H   0  1  N  N  N  59.404  17.410  51.528   -7.089  -1.463  -1.666  H11  RN9  46  
RN9  H12  H12  H   0  1  N  N  N  62.212  13.989  54.113   -1.313   3.940   0.031  H12  RN9  47  
RN9  H13  H13  H   0  1  N  N  N  64.280  14.358  52.839    0.868   4.629  -0.878  H13  RN9  48  
RN9  H14  H14  H   0  1  N  N  N  64.442  13.616  50.495    2.626   2.953  -1.268  H14  RN9  49  
RN9  H15  H15  H   0  1  N  N  N  59.836  11.624  49.366    3.626   2.660   0.352  H15  RN9  50  
RN9  H16  H16  H   0  1  N  N  N  59.897   6.820  44.396    5.956  -0.969   1.997  H16  RN9  51  
RN9  H17  H17  H   0  1  N  N  N  61.074   7.738  43.396    7.365  -1.518   2.938  H17  RN9  52  
RN9  H18  H18  H   0  1  N  N  N  60.093   8.382  46.207    8.893  -0.625   1.232  H18  RN9  53  
RN9  H19  H19  H   0  1  N  N  N  61.756   7.951  45.683    7.774   0.663   1.752  H19  RN9  54  
RN9  H20  H20  H   0  1  N  N  N  60.425  12.168  50.693    0.011  -0.110   0.175  H20  RN9  55  
RN9  H21  H21  H   0  1  N  N  N  58.470  10.477  43.162    7.196  -3.459  -0.657  H21  RN9  56  
RN9  H22  H22  H   0  1  N  N  N  63.410  12.797  48.646    2.197  -0.502  -1.175  H22  RN9  57  
RN9  H23  H23  H   0  1  N  N  N  60.501  16.143  54.838   -5.237   0.281  -1.671  H23  RN9  58  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
RN9  O1   C3   DOUB  N  N   1  
RN9  C3   N1   SING  N  N   2  
RN9  C3   C4   SING  N  N   3  
RN9  N1   C2   SING  N  N   4  
RN9  C4   C5   SING  N  N   5  
RN9  O2   C2   DOUB  N  N   6  
RN9  C2   C1   SING  N  N   7  
RN9  C1   C5   SING  N  N   8  
RN9  C1   N    SING  N  N   9  
RN9  N    C6   SING  N  N  10  
RN9  N    C    SING  N  N  11  
RN9  O4   C6   DOUB  N  N  12  
RN9  C6   C7   SING  N  N  13  
RN9  O    C    DOUB  N  N  14  
RN9  C    C24  SING  N  N  15  
RN9  C7   C24  DOUB  N  N  16  
RN9  C7   N2   SING  N  N  17  
RN9  N2   C8   SING  N  N  18  
RN9  CL   C19  SING  N  N  19  
RN9  C8   C23  DOUB  Y  N  20  
RN9  C8   C9   SING  Y  N  21  
RN9  C23  C22  SING  Y  N  22  
RN9  C9   C10  DOUB  Y  N  23  
RN9  C19  C20  DOUB  Y  N  24  
RN9  C19  C17  SING  Y  N  25  
RN9  C18  C17  SING  N  N  26  
RN9  C20  C14  SING  Y  N  27  
RN9  O3   C13  DOUB  N  N  28  
RN9  C22  C21  DOUB  Y  N  29  
RN9  C17  C16  DOUB  Y  N  30  
RN9  C10  C21  SING  Y  N  31  
RN9  C10  C11  SING  N  N  32  
RN9  C11  C12  SING  N  N  33  
RN9  C13  N3   SING  N  N  34  
RN9  C13  C12  SING  N  N  35  
RN9  C14  N3   SING  N  N  36  
RN9  C14  C15  DOUB  Y  N  37  
RN9  C16  C15  SING  Y  N  38  
RN9  C1   H1   SING  N  N  39  
RN9  C11  H2   SING  N  N  40  
RN9  C11  H3   SING  N  N  41  
RN9  C12  H4   SING  N  N  42  
RN9  C12  H5   SING  N  N  43  
RN9  C15  H6   SING  N  N  44  
RN9  C16  H7   SING  N  N  45  
RN9  C18  H8   SING  N  N  46  
RN9  C18  H9   SING  N  N  47  
RN9  C18  H10  SING  N  N  48  
RN9  C20  H11  SING  N  N  49  
RN9  C21  H12  SING  N  N  50  
RN9  C22  H13  SING  N  N  51  
RN9  C23  H14  SING  N  N  52  
RN9  C24  H15  SING  N  N  53  
RN9  C4   H16  SING  N  N  54  
RN9  C4   H17  SING  N  N  55  
RN9  C5   H18  SING  N  N  56  
RN9  C5   H19  SING  N  N  57  
RN9  C9   H20  SING  N  N  58  
RN9  N1   H21  SING  N  N  59  
RN9  N2   H22  SING  N  N  60  
RN9  N3   H23  SING  N  N  61  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
RN9  InChI             InChI                 1.03   "InChI=1S/C25H23ClN4O5/c1-14-5-7-17(12-18(14)26)28-21(31)9-6-15-3-2-4-16(11-15)27-19-13-23(33)30(25(19)35)20-8-10-22(32)29-24(20)34/h2-5,7,11-13,20,27H,6,8-10H2,1H3,(H,28,31)(H,29,32,34)/t20-/m0/s1"  
RN9  InChIKey          InChI                 1.03   YDYSAFPHVGVORZ-FQEVSTJZSA-N  
RN9  SMILES_CANONICAL  CACTVS                3.385  "Cc1ccc(NC(=O)CCc2cccc(NC3=CC(=O)N([C@H]4CCC(=O)NC4=O)C3=O)c2)cc1Cl"  
RN9  SMILES            CACTVS                3.385  "Cc1ccc(NC(=O)CCc2cccc(NC3=CC(=O)N([CH]4CCC(=O)NC4=O)C3=O)c2)cc1Cl"  
RN9  SMILES_CANONICAL  "OpenEye OEToolkits"  2.0.7  "Cc1ccc(cc1Cl)NC(=O)CCc2cccc(c2)NC3=CC(=O)N(C3=O)[C@H]4CCC(=O)NC4=O"  
RN9  SMILES            "OpenEye OEToolkits"  2.0.7  "Cc1ccc(cc1Cl)NC(=O)CCc2cccc(c2)NC3=CC(=O)N(C3=O)C4CCC(=O)NC4=O"  
#
_pdbx_chem_comp_identifier.comp_id          RN9
_pdbx_chem_comp_identifier.type             "SYSTEMATIC NAME"
_pdbx_chem_comp_identifier.program          "OpenEye OEToolkits"
_pdbx_chem_comp_identifier.program_version  2.0.7
_pdbx_chem_comp_identifier.identifier       "3-[3-[[1-[(3~{S})-2,6-bis(oxidanylidene)piperidin-3-yl]-2,5-bis(oxidanylidene)pyrrol-3-yl]amino]phenyl]-~{N}-(3-chloranyl-4-methyl-phenyl)propanamide"
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
RN9  "Create component"  2021-02-12  RCSB  
RN9  "Initial release"   2021-06-02  RCSB  
##
