data_OY9
# 
_chem_comp.id                                    OY9 
_chem_comp.name                                  "3-({3-[(4-chlorophenyl)methyl]-4-oxo-3,5,7,8-tetrahydropyrido[4,3-d]pyrimidin-6(4H)-yl}methyl)benzonitrile" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C22 H19 Cl N4 O" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2022-05-19 
_chem_comp.pdbx_modified_date                    2023-01-06 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        390.865 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     OY9 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        7UVU 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
OY9 C02  C1  C  0 1 N N N -31.987 45.411 -22.250 3.816  3.335  -1.552 C02  OY9 1  
OY9 C03  C2  C  0 1 Y N N -33.239 46.065 -22.838 4.003  2.519  -0.391 C03  OY9 2  
OY9 C04  C3  C  0 1 Y N N -33.274 47.437 -22.870 4.168  3.111  0.863  C04  OY9 3  
OY9 C05  C4  C  0 1 Y N N -34.416 48.073 -23.414 4.348  2.318  1.978  C05  OY9 4  
OY9 C06  C5  C  0 1 Y N N -35.500 47.308 -23.909 4.366  0.940  1.856  C06  OY9 5  
OY9 C07  C6  C  0 1 Y N N -35.445 45.945 -23.872 4.204  0.347  0.616  C07  OY9 6  
OY9 C08  C7  C  0 1 N N N -36.666 45.135 -24.420 4.225  -1.155 0.493  C08  OY9 7  
OY9 C10  C8  C  0 1 N N N -37.650 43.340 -23.665 2.871  -3.145 0.773  C10  OY9 8  
OY9 C11  C9  C  0 1 N N N -38.639 42.657 -22.609 1.499  -3.599 1.273  C11  OY9 9  
OY9 C12  C10 C  0 1 N N N -39.520 43.664 -21.854 0.413  -2.977 0.434  C12  OY9 10 
OY9 C14  C11 C  0 1 N N N -41.250 44.011 -20.326 -1.804 -3.014 -0.215 C14  OY9 11 
OY9 C16  C12 C  0 1 N N N -42.113 46.196 -19.645 -2.763 -1.412 -1.785 C16  OY9 12 
OY9 C17  C13 C  0 1 Y N N -41.539 46.420 -18.228 -3.475 -0.366 -0.967 C17  OY9 13 
OY9 C18  C14 C  0 1 Y N N -42.321 46.828 -17.179 -3.091 0.959  -1.054 C18  OY9 14 
OY9 C19  C15 C  0 1 Y N N -41.785 47.035 -15.893 -3.744 1.919  -0.304 C19  OY9 15 
OY9 C20  C16 C  0 1 Y N N -40.424 46.799 -15.704 -4.783 1.554  0.533  C20  OY9 16 
OY9 C22  C17 C  0 1 Y N N -39.639 46.386 -16.753 -5.168 0.227  0.619  C22  OY9 17 
OY9 C23  C18 C  0 1 Y N N -40.181 46.195 -18.023 -4.517 -0.731 -0.135 C23  OY9 18 
OY9 C24  C19 C  0 1 N N N -40.266 45.853 -21.273 -0.418 -1.367 -1.114 C24  OY9 19 
OY9 C26  C20 C  0 1 N N N -39.378 44.982 -22.024 0.651  -1.904 -0.361 C26  OY9 20 
OY9 C27  C21 C  0 1 N N N -38.320 45.541 -23.000 2.010  -1.270 -0.473 C27  OY9 21 
OY9 C28  C22 C  0 1 Y N N -34.300 45.285 -23.327 4.016  1.127  -0.506 C28  OY9 22 
OY9 N01  N1  N  0 1 N N N -31.097 44.944 -21.826 3.668  3.982  -2.474 N01  OY9 23 
OY9 N09  N2  N  0 1 N N N -37.286 44.691 -23.398 2.862  -1.678 0.649  N09  OY9 24 
OY9 N13  N3  N  0 1 N N N -40.466 43.185 -20.999 -0.817 -3.506 0.481  N13  OY9 25 
OY9 N15  N4  N  0 1 N N N -41.155 45.336 -20.460 -1.633 -1.945 -1.018 N15  OY9 26 
OY9 O25  O1  O  0 1 N N N -40.167 47.055 -21.398 -0.244 -0.400 -1.836 O25  OY9 27 
OY9 CL21 CL1 CL 0 0 N N N -39.542 47.031 -13.995 -5.604 2.759  1.475  CL21 OY9 28 
OY9 H1   H1  H  0 1 N N N -32.448 48.019 -22.488 4.155  4.186  0.960  H1   OY9 29 
OY9 H2   H2  H  0 1 N N N -34.461 49.151 -23.452 4.476  2.775  2.949  H2   OY9 30 
OY9 H3   H3  H  0 1 N N N -36.370 47.803 -24.316 4.508  0.325  2.732  H3   OY9 31 
OY9 H4   H4  H  0 1 N N N -37.324 45.790 -25.010 4.611  -1.433 -0.488 H4   OY9 32 
OY9 H5   H5  H  0 1 N N N -36.319 44.301 -25.048 4.867  -1.574 1.268  H5   OY9 33 
OY9 H6   H6  H  0 1 N N N -36.727 42.743 -23.696 3.639  -3.448 1.484  H6   OY9 34 
OY9 H7   H7  H  0 1 N N N -38.138 43.312 -24.650 3.072  -3.593 -0.201 H7   OY9 35 
OY9 H8   H8  H  0 1 N N N -39.294 41.957 -23.148 1.431  -4.685 1.207  H8   OY9 36 
OY9 H9   H9  H  0 1 N N N -38.036 42.103 -21.875 1.374  -3.292 2.312  H9   OY9 37 
OY9 H10  H10 H  0 1 N N N -41.987 43.603 -19.650 -2.780 -3.472 -0.147 H10  OY9 38 
OY9 H11  H11 H  0 1 N N N -43.085 45.688 -19.569 -3.454 -2.221 -2.022 H11  OY9 39 
OY9 H12  H12 H  0 1 N N N -42.245 47.168 -20.143 -2.396 -0.964 -2.708 H12  OY9 40 
OY9 H13  H13 H  0 1 N N N -43.375 46.995 -17.343 -2.279 1.244  -1.707 H13  OY9 41 
OY9 H14  H14 H  0 1 N N N -42.410 47.367 -15.077 -3.443 2.954  -0.371 H14  OY9 42 
OY9 H15  H15 H  0 1 N N N -38.586 46.207 -16.591 -5.979 -0.058 1.273  H15  OY9 43 
OY9 H16  H16 H  0 1 N N N -39.552 45.875 -18.841 -4.820 -1.765 -0.071 H16  OY9 44 
OY9 H17  H17 H  0 1 N N N -38.850 45.861 -23.909 2.475  -1.580 -1.409 H17  OY9 45 
OY9 H18  H18 H  0 1 N N N -37.858 46.415 -22.518 1.902  -0.186 -0.467 H18  OY9 46 
OY9 H19  H19 H  0 1 N N N -34.252 44.207 -23.292 3.885  0.663  -1.472 H19  OY9 47 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
OY9 C02 C03  SING N N 1  
OY9 C02 N01  TRIP N N 2  
OY9 C03 C04  DOUB Y N 3  
OY9 C03 C28  SING Y N 4  
OY9 C04 C05  SING Y N 5  
OY9 C05 C06  DOUB Y N 6  
OY9 C06 C07  SING Y N 7  
OY9 C07 C08  SING N N 8  
OY9 C07 C28  DOUB Y N 9  
OY9 C08 N09  SING N N 10 
OY9 C10 C11  SING N N 11 
OY9 C10 N09  SING N N 12 
OY9 C11 C12  SING N N 13 
OY9 C12 C26  DOUB N N 14 
OY9 C12 N13  SING N N 15 
OY9 C14 N13  DOUB N N 16 
OY9 C14 N15  SING N N 17 
OY9 C16 C17  SING N N 18 
OY9 C16 N15  SING N N 19 
OY9 C17 C18  DOUB Y N 20 
OY9 C17 C23  SING Y N 21 
OY9 C18 C19  SING Y N 22 
OY9 C19 C20  DOUB Y N 23 
OY9 C20 C22  SING Y N 24 
OY9 C22 C23  DOUB Y N 25 
OY9 C24 C26  SING N N 26 
OY9 C24 N15  SING N N 27 
OY9 C24 O25  DOUB N N 28 
OY9 C26 C27  SING N N 29 
OY9 C27 N09  SING N N 30 
OY9 C20 CL21 SING N N 31 
OY9 C04 H1   SING N N 32 
OY9 C05 H2   SING N N 33 
OY9 C06 H3   SING N N 34 
OY9 C08 H4   SING N N 35 
OY9 C08 H5   SING N N 36 
OY9 C10 H6   SING N N 37 
OY9 C10 H7   SING N N 38 
OY9 C11 H8   SING N N 39 
OY9 C11 H9   SING N N 40 
OY9 C14 H10  SING N N 41 
OY9 C16 H11  SING N N 42 
OY9 C16 H12  SING N N 43 
OY9 C18 H13  SING N N 44 
OY9 C19 H14  SING N N 45 
OY9 C22 H15  SING N N 46 
OY9 C23 H16  SING N N 47 
OY9 C27 H17  SING N N 48 
OY9 C27 H18  SING N N 49 
OY9 C28 H19  SING N N 50 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
OY9 SMILES           ACDLabs              12.01 "Clc1ccc(cc1)CN1C=NC=2CCN(Cc3cccc(C#N)c3)CC=2C1=O"                                                                                     
OY9 InChI            InChI                1.03  "InChI=1S/C22H19ClN4O/c23-19-6-4-16(5-7-19)13-27-15-25-21-8-9-26(14-20(21)22(27)28)12-18-3-1-2-17(10-18)11-24/h1-7,10,15H,8-9,12-14H2" 
OY9 InChIKey         InChI                1.03  JNBDIOOOVLLTKQ-UHFFFAOYSA-N                                                                                                            
OY9 SMILES_CANONICAL CACTVS               3.385 "Clc1ccc(CN2C=NC3=C(CN(CC3)Cc4cccc(c4)C#N)C2=O)cc1"                                                                                    
OY9 SMILES           CACTVS               3.385 "Clc1ccc(CN2C=NC3=C(CN(CC3)Cc4cccc(c4)C#N)C2=O)cc1"                                                                                    
OY9 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "c1cc(cc(c1)C#N)CN2CCC3=C(C2)C(=O)N(C=N3)Cc4ccc(cc4)Cl"                                                                                
OY9 SMILES           "OpenEye OEToolkits" 2.0.7 "c1cc(cc(c1)C#N)CN2CCC3=C(C2)C(=O)N(C=N3)Cc4ccc(cc4)Cl"                                                                                
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
OY9 "SYSTEMATIC NAME" ACDLabs              12.01 "3-({3-[(4-chlorophenyl)methyl]-4-oxo-3,5,7,8-tetrahydropyrido[4,3-d]pyrimidin-6(4H)-yl}methyl)benzonitrile"              
OY9 "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "3-[[3-[(4-chlorophenyl)methyl]-4-oxidanylidene-7,8-dihydro-5~{H}-pyrido[4,3-d]pyrimidin-6-yl]methyl]benzenecarbonitrile" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
OY9 "Create component" 2022-05-19 RCSB 
OY9 "Initial release"  2023-01-11 RCSB 
# 
