data_KP9
# 
_chem_comp.id                                    KP9 
_chem_comp.name                                  "Bilin 618 (single linked)" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C33 H36 N4 O6" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         "(1R,4S,5R)-3-(BENZO[B]THIOPHEN-2-YL)METHOXY-1,4,5-TRIHYDROXY-2-(THIEN-2-YL)METHYLCYCLOHEX-2-EN-1-CARBOXYLATE" 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2022-02-09 
_chem_comp.pdbx_modified_date                    2024-09-27 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        584.662 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     KP9 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        7T8S 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
_chem_comp.pdbx_pcm                              Y 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
KP9 CBB  C1  C 0 1 N N N N N N 5.580  39.312 8.974  -4.266 3.348  -0.203 CBB  KP9 1  
KP9 CBA  C2  C 0 1 N N N N N N -0.973 42.614 14.192 4.283  5.345  -0.414 CBA  KP9 2  
KP9 CBC  C3  C 0 1 N N N N N N 0.515  35.513 5.149  -4.389 -3.612 -0.038 CBC  KP9 3  
KP9 NB   N1  N 0 1 Y N N N N N 1.187  40.535 9.612  -0.269 1.421  0.131  NB   KP9 4  
KP9 ND   N2  N 0 1 N N N N N N -2.855 40.860 4.784  2.106  -1.882 1.290  ND   KP9 5  
KP9 OD   O1  O 0 1 N N N N N N -3.883 41.277 2.636  3.486  -2.169 3.072  OD   KP9 6  
KP9 C1A  C4  C 0 1 N N N N N N 3.565  44.035 13.678 3.387  1.148  -1.673 C1A  KP9 7  
KP9 C1B  C5  C 0 1 Y N N N N N 1.826  40.919 10.827 0.089  2.703  0.450  C1B  KP9 8  
KP9 C1C  C6  C 0 1 N N N N N N 0.391  38.782 7.138  -1.739 -1.071 -0.225 C1C  KP9 9  
KP9 C1D  C7  C 0 1 N N R N N N -3.278 41.000 6.204  2.255  -2.102 -0.154 C1D  KP9 10 
KP9 C2A  C8  C 0 1 N N N N N N 2.288  44.520 14.163 4.368  2.043  -1.180 C2A  KP9 11 
KP9 C2B  C9  C 0 1 Y N N N N N 3.077  40.194 10.935 -1.059 3.396  0.830  C2B  KP9 12 
KP9 C2C  C10 C 0 1 N N N N N N -0.024 37.853 6.127  -2.383 -2.341 -0.600 C2C  KP9 13 
KP9 C2D  C11 C 0 1 N N N N N N -4.739 41.592 6.098  3.656  -2.631 -0.353 C2D  KP9 14 
KP9 C3A  C12 C 0 1 N N N N N N 1.251  43.795 13.509 3.754  2.924  -0.352 C3A  KP9 15 
KP9 C3B  C13 C 0 1 Y N N N N N 3.173  39.373 9.779  -2.127 2.523  0.742  C3B  KP9 16 
KP9 C3C  C14 C 0 1 N N N N N N -1.408 38.027 5.892  -1.327 -3.238 -0.793 C3C  KP9 17 
KP9 C3D  C15 C 0 1 N N N N N N -5.108 41.687 4.766  4.225  -2.697 0.863  C3D  KP9 18 
KP9 C4A  C16 C 0 1 N N N N N N 1.882  42.860 12.618 2.378  2.586  -0.319 C4A  KP9 19 
KP9 C4B  C17 C 0 1 Y N N N N N 2.009  39.586 8.969  -1.630 1.293  0.300  C4B  KP9 20 
KP9 C4C  C18 C 0 1 N N N N N N -1.851 39.073 6.774  -0.154 -2.539 -0.546 C4C  KP9 21 
KP9 C4D  C19 C 0 1 N N N N N N -3.941 41.274 3.907  3.265  -2.227 1.878  C4D  KP9 22 
KP9 CAA  C20 C 0 1 N N N N N N -0.316 43.978 13.711 4.413  4.054  0.396  CAA  KP9 23 
KP9 CAB  C21 C 0 1 N N N N N N 4.356  38.400 9.417  -3.565 2.841  1.059  CAB  KP9 24 
KP9 CAC  C22 C 0 1 N N N N N N 0.924  36.831 5.397  -3.814 -2.606 -0.741 CAC  KP9 25 
KP9 CAD  C23 C 0 1 N N N N N N -6.567 42.101 4.303  5.600  -3.162 1.139  CAD  KP9 26 
KP9 CBD  C24 C 0 1 N N N N N N -6.753 42.734 3.063  6.056  -3.184 2.384  CBD  KP9 27 
KP9 CGB  C25 C 0 1 N N N N N N 5.141  40.318 7.822  -5.704 3.665  0.114  CGB  KP9 28 
KP9 CGC  C26 C 0 1 N N N N N N 1.556  34.599 4.400  -5.790 -3.803 -0.093 CGC  KP9 29 
KP9 CHA  C27 C 0 1 N N N N N N 1.163  41.961 11.806 1.398  3.233  0.401  CHA  KP9 30 
KP9 CHB  C28 C 0 1 N N N N N N 1.713  38.888 7.601  -2.383 0.134  0.076  CHB  KP9 31 
KP9 CHC  C29 C 0 1 N N N N N N -3.324 39.624 6.858  1.230  -3.128 -0.639 CHC  KP9 32 
KP9 CMA  C30 C 0 1 N N N N N N 2.064  45.662 15.234 5.836  2.021  -1.518 CMA  KP9 33 
KP9 CMB  C31 C 0 1 N N N N N N 4.156  40.232 12.096 -1.124 4.839  1.261  CMB  KP9 34 
KP9 CMC  C32 C 0 1 N N N N N N -2.296 37.213 4.858  -1.442 -4.687 -1.191 CMC  KP9 35 
KP9 CMD  C33 C 0 1 N N N N N N -5.715 41.815 7.325  4.294  -3.013 -1.664 CMD  KP9 36 
KP9 NA   N3  N 0 1 N N N N N N 3.297  43.020 12.726 2.194  1.489  -1.151 NA   KP9 37 
KP9 NC   N4  N 0 1 N N N N N N -0.738 39.551 7.535  -0.415 -1.293 -0.221 NC   KP9 38 
KP9 O1B  O2  O 0 1 N N N N N N 4.930  41.596 8.073  -6.517 4.129  -0.849 O1B  KP9 39 
KP9 O1C  O3  O 0 1 N N N N N N 1.149  33.509 3.763  -6.479 -3.064 -0.772 O1C  KP9 40 
KP9 O2B  O4  O 0 1 N N N N N N 5.003  39.867 6.596  -6.126 3.503  1.234  O2B  KP9 41 
KP9 O2C  O5  O 0 1 N N N N N N 2.825  34.973 4.414  -6.363 -4.805 0.607  O2C  KP9 42 
KP9 OA   O6  O 0 1 N N N N N N 4.732  44.433 14.010 3.589  0.227  -2.443 OA   KP9 43 
KP9 HBB2 H1  H 0 0 N N N N N N 6.393  38.671 8.603  -3.765 4.248  -0.560 HBB2 KP9 44 
KP9 HBB1 H2  H 0 0 N N N N N N 5.934  39.888 9.842  -4.225 2.580  -0.975 HBB1 KP9 45 
KP9 HBA3 H3  H 0 0 N N N N N N -2.055 42.755 14.327 4.767  5.219  -1.381 HBA3 KP9 46 
KP9 HBA2 H4  H 0 0 N N N N N N -0.797 41.835 13.435 3.228  5.576  -0.563 HBA2 KP9 47 
KP9 HBA1 H5  H 0 0 N N N N N N -0.521 42.306 15.147 4.760  6.163  0.127  HBA1 KP9 48 
KP9 HBC1 H6  H 0 0 N N N N N N -0.455 35.147 5.453  -3.778 -4.268 0.564  HBC1 KP9 49 
KP9 HNB  H7  H 0 1 N N N N N N 0.310  40.878 9.275  0.334  0.721  -0.166 HNB  KP9 50 
KP9 HND  H8  H 0 1 N N N N N N -1.961 40.532 4.479  1.314  -1.544 1.738  HND  KP9 51 
KP9 H1D1 H9  H 0 0 N N N N N N -2.623 41.686 6.761  2.128  -1.162 -0.692 H1D1 KP9 52 
KP9 HAA2 H11 H 0 1 N Y N N N N -0.496 44.755 14.469 5.468  3.824  0.545  H2   KP9 53 
KP9 HAA1 H12 H 0 0 N N N N N N -0.771 44.284 12.758 3.928  4.181  1.364  HAA1 KP9 54 
KP9 HAB1 H13 H 0 0 N N N N N N 4.061  37.735 8.592  -3.606 3.609  1.831  HAB1 KP9 55 
KP9 HAB2 H14 H 0 0 N N N N N N 4.632  37.796 10.294 -4.066 1.940  1.415  HAB2 KP9 56 
KP9 HAC1 H15 H 0 0 N N N N N N 1.906  37.150 5.082  -4.413 -2.001 -1.405 HAC1 KP9 57 
KP9 HAD1 H16 H 0 0 N N N N N N -7.415 41.897 4.939  6.234  -3.485 0.326  HAD1 KP9 58 
KP9 HBD1 H17 H 0 0 N N N N N N -7.745 43.017 2.745  5.422  -2.862 3.197  HBD1 KP9 59 
KP9 HBD2 H18 H 0 0 N N N N N N -5.904 42.937 2.428  7.061  -3.524 2.585  HBD2 KP9 60 
KP9 HHA1 H19 H 0 0 N N N N N N 0.085  41.988 11.858 1.631  4.147  0.928  HHA1 KP9 61 
KP9 HHB1 H21 H 0 0 N N N N N N 2.525  38.487 7.012  -3.460 0.170  0.137  HHB1 KP9 62 
KP9 HHC2 H23 H 0 0 N N N N N N -3.645 39.707 7.907  1.444  -3.393 -1.675 HHC2 KP9 63 
KP9 HHC1 H24 H 0 0 N N N N N N -4.014 38.962 6.314  1.288  -4.021 -0.017 HHC1 KP9 64 
KP9 HMA3 H25 H 0 0 N N N N N N 3.038  46.046 15.571 6.038  1.202  -2.208 HMA3 KP9 65 
KP9 HMA2 H26 H 0 0 N N N N N N 1.484  46.480 14.782 6.116  2.966  -1.983 HMA2 KP9 66 
KP9 HMA1 H27 H 0 0 N N N N N N 1.513  45.255 16.095 6.417  1.880  -0.606 HMA1 KP9 67 
KP9 HMB2 H28 H 0 0 N N N N N N 4.905  41.006 11.876 -1.292 5.471  0.390  HMB2 KP9 68 
KP9 HMB3 H29 H 0 0 N N N N N N 3.660  40.463 13.050 -1.943 4.970  1.968  HMB3 KP9 69 
KP9 HMB1 H30 H 0 0 N N N N N N 4.651  39.253 12.168 -0.185 5.118  1.738  HMB1 KP9 70 
KP9 HMC1 H31 H 0 0 N N N N N N -3.334 37.574 4.902  -2.494 -4.948 -1.312 HMC1 KP9 71 
KP9 HMC3 H32 H 0 0 N N N N N N -1.900 37.357 3.842  -0.917 -4.848 -2.132 HMC3 KP9 72 
KP9 HMC2 H33 H 0 0 N N N N N N -2.269 36.144 5.114  -1.000 -5.313 -0.416 HMC2 KP9 73 
KP9 HMD1 H34 H 0 0 N N N N N N -5.160 41.678 8.265  4.795  -2.144 -2.091 HMD1 KP9 74 
KP9 HMD2 H35 H 0 0 N N N N N N -6.125 42.835 7.286  5.022  -3.806 -1.496 HMD2 KP9 75 
KP9 HMD3 H36 H 0 0 N N N N N N -6.538 41.087 7.276  3.526  -3.364 -2.353 HMD3 KP9 76 
KP9 HNA  H37 H 0 1 N N N N N N 3.984  42.503 12.215 1.351  1.041  -1.322 HNA  KP9 77 
KP9 HO1B H39 H 0 1 N N N N N N 4.690  42.042 7.269  -7.431 4.319  -0.598 H6   KP9 78 
KP9 HO2C H40 H 0 1 N N N N N N 3.344  34.353 3.916  -7.323 -4.856 0.507  H7   KP9 79 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
KP9 OD  C4D  DOUB N N 1  
KP9 CBD CAD  DOUB N N 2  
KP9 O1C CGC  DOUB N N 3  
KP9 C4D C3D  SING N N 4  
KP9 C4D ND   SING N N 5  
KP9 CAD C3D  SING N N 6  
KP9 CGC O2C  SING N N 7  
KP9 CGC CBC  SING N N 8  
KP9 C3D C2D  DOUB N N 9  
KP9 ND  C1D  SING N N 10 
KP9 CMC C3C  SING N N 11 
KP9 CBC CAC  DOUB N E 12 
KP9 CAC C2C  SING N N 13 
KP9 C3C C2C  DOUB N N 14 
KP9 C3C C4C  SING N N 15 
KP9 C2D C1D  SING N N 16 
KP9 C2D CMD  SING N N 17 
KP9 C2C C1C  SING N N 18 
KP9 C1D CHC  SING N N 19 
KP9 O2B CGB  DOUB N N 20 
KP9 C4C CHC  SING N N 21 
KP9 C4C NC   DOUB N N 22 
KP9 C1C NC   SING N N 23 
KP9 C1C CHB  DOUB N Z 24 
KP9 CHB C4B  SING N N 25 
KP9 CGB O1B  SING N N 26 
KP9 CGB CBB  SING N N 27 
KP9 C4B NB   SING Y N 28 
KP9 C4B C3B  DOUB Y N 29 
KP9 CBB CAB  SING N N 30 
KP9 CAB C3B  SING N N 31 
KP9 NB  C1B  SING Y N 32 
KP9 C3B C2B  SING Y N 33 
KP9 C1B C2B  DOUB Y N 34 
KP9 C1B CHA  SING N N 35 
KP9 C2B CMB  SING N N 36 
KP9 CHA C4A  DOUB N Z 37 
KP9 C4A NA   SING N N 38 
KP9 C4A C3A  SING N N 39 
KP9 NA  C1A  SING N N 40 
KP9 C3A CAA  SING N N 41 
KP9 C3A C2A  DOUB N N 42 
KP9 C1A OA   DOUB N N 43 
KP9 C1A C2A  SING N N 44 
KP9 CAA CBA  SING N N 45 
KP9 C2A CMA  SING N N 46 
KP9 CBB HBB2 SING N N 47 
KP9 CBB HBB1 SING N N 48 
KP9 CBA HBA3 SING N N 49 
KP9 CBA HBA2 SING N N 50 
KP9 CBA HBA1 SING N N 51 
KP9 CBC HBC1 SING N N 52 
KP9 NB  HNB  SING N N 53 
KP9 ND  HND  SING N N 54 
KP9 C1D H1D1 SING N N 55 
KP9 CAA HAA2 SING N N 56 
KP9 CAA HAA1 SING N N 57 
KP9 CAB HAB1 SING N N 58 
KP9 CAB HAB2 SING N N 59 
KP9 CAC HAC1 SING N N 60 
KP9 CAD HAD1 SING N N 61 
KP9 CBD HBD1 SING N N 62 
KP9 CBD HBD2 SING N N 63 
KP9 CHA HHA1 SING N N 64 
KP9 CHB HHB1 SING N N 65 
KP9 CHC HHC2 SING N N 66 
KP9 CHC HHC1 SING N N 67 
KP9 CMA HMA3 SING N N 68 
KP9 CMA HMA2 SING N N 69 
KP9 CMA HMA1 SING N N 70 
KP9 CMB HMB2 SING N N 71 
KP9 CMB HMB3 SING N N 72 
KP9 CMB HMB1 SING N N 73 
KP9 CMC HMC1 SING N N 74 
KP9 CMC HMC3 SING N N 75 
KP9 CMC HMC2 SING N N 76 
KP9 CMD HMD1 SING N N 77 
KP9 CMD HMD2 SING N N 78 
KP9 CMD HMD3 SING N N 79 
KP9 NA  HNA  SING N N 80 
KP9 O1B HO1B SING N N 81 
KP9 O2C HO2C SING N N 82 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
KP9 SMILES           ACDLabs              12.01 "O=C(O)CCc1c(C)c(/C=C2\NC(=O)C(C)=C2CC)[NH]c1/C=C1\N=C(CC2NC(=O)C(C=C)=C2C)C(C)=C1/C=C/C(=O)O"                                                                                                                                                                              
KP9 InChI            InChI                1.03  "InChI=1S/C33H36N4O6/c1-7-20-19(6)32(42)37-27(20)14-25-18(5)23(10-12-31(40)41)29(35-25)15-28-22(9-11-30(38)39)17(4)24(34-28)13-26-16(3)21(8-2)33(43)36-26/h8-9,11,14-15,26,35H,2,7,10,12-13H2,1,3-6H3,(H,36,43)(H,37,42)(H,38,39)(H,40,41)/b11-9+,27-14-,28-15-/t26-/m1/s1" 
KP9 InChIKey         InChI                1.03  DWOKJMXOEBXRPB-ZHKKBVGESA-N                                                                                                                                                                                                                                                 
KP9 SMILES_CANONICAL CACTVS               3.385 "CCC/1=C(C)C(=O)NC/1=C/c2[nH]c(/C=C/3N=C(C[C@H]4NC(=O)C(=C4C)C=C)C(=C/3/C=C/C(O)=O)C)c(CCC(O)=O)c2C"                                                                                                                                                                        
KP9 SMILES           CACTVS               3.385 "CCC1=C(C)C(=O)NC1=Cc2[nH]c(C=C3N=C(C[CH]4NC(=O)C(=C4C)C=C)C(=C3C=CC(O)=O)C)c(CCC(O)=O)c2C"                                                                                                                                                                                 
KP9 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CCC\1=C(C(=O)N/C1=C\c2c(c(c([nH]2)/C=C\3/C(=C(C(=N3)C[C@@H]4C(=C(C(=O)N4)C=C)C)C)/C=C/C(=O)O)CCC(=O)O)C)C"                                                                                                                                                                 
KP9 SMILES           "OpenEye OEToolkits" 2.0.7 "CCC1=C(C(=O)NC1=Cc2c(c(c([nH]2)C=C3C(=C(C(=N3)CC4C(=C(C(=O)N4)C=C)C)C)C=CC(=O)O)CCC(=O)O)C)C"                                                                                                                                                                              
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
KP9 "SYSTEMATIC NAME" ACDLabs              12.01 "(2E)-3-[(2Z)-2-({3-(2-carboxyethyl)-5-[(Z)-(3-ethyl-4-methyl-5-oxo-1,5-dihydro-2H-pyrrol-2-ylidene)methyl]-4-methyl-1H-pyrrol-2-yl}methylidene)-5-{[(2R)-4-ethenyl-3-methyl-5-oxo-2,5-dihydro-1H-pyrrol-2-yl]methyl}-4-methyl-2H-pyrrol-3-yl]prop-2-enoic acid"                                
KP9 "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "3-[2-[(~{Z})-[5-[[(2~{R})-4-ethenyl-3-methyl-5-oxidanylidene-1,2-dihydropyrrol-2-yl]methyl]-4-methyl-3-[(~{E})-3-oxidanyl-3-oxidanylidene-prop-1-enyl]pyrrol-2-ylidene]methyl]-5-[(~{Z})-(3-ethyl-4-methyl-5-oxidanylidene-pyrrol-2-ylidene)methyl]-4-methyl-1~{H}-pyrrol-3-yl]propanoic acid" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
KP9 "Create component" 2022-02-09 RCSB 
KP9 "Modify name"      2022-09-20 RCSB 
KP9 "Modify synonyms"  2022-09-20 RCSB 
KP9 "Modify atom id"   2022-09-20 RCSB 
KP9 "Initial release"  2023-02-15 RCSB 
KP9 "Modify PCM"       2024-09-27 PDBE 
# 
_pdbx_chem_comp_synonyms.ordinal      1 
_pdbx_chem_comp_synonyms.comp_id      KP9 
_pdbx_chem_comp_synonyms.name         "(1R,4S,5R)-3-(BENZO[B]THIOPHEN-2-YL)METHOXY-1,4,5-TRIHYDROXY-2-(THIEN-2-YL)METHYLCYCLOHEX-2-EN-1-CARBOXYLATE" 
_pdbx_chem_comp_synonyms.provenance   ? 
_pdbx_chem_comp_synonyms.type         ? 
# 
_pdbx_chem_comp_pcm.pcm_id                             1 
_pdbx_chem_comp_pcm.comp_id                            KP9 
_pdbx_chem_comp_pcm.modified_residue_id                CYS 
_pdbx_chem_comp_pcm.type                               None 
_pdbx_chem_comp_pcm.category                           "Covalent chemical modification" 
_pdbx_chem_comp_pcm.position                           "Amino-acid side chain" 
_pdbx_chem_comp_pcm.polypeptide_position               "Any position" 
_pdbx_chem_comp_pcm.comp_id_linking_atom               CAA 
_pdbx_chem_comp_pcm.modified_residue_id_linking_atom   SG 
_pdbx_chem_comp_pcm.uniprot_specific_ptm_accession     ? 
_pdbx_chem_comp_pcm.uniprot_generic_ptm_accession      ? 
# 
