data_J49
#

_chem_comp.id                                   J49
_chem_comp.name                                 "(2S)-2-[[4-[(4-azanyl-6-oxidanyl-pyrimidin-5-yl)carbamoylamino]phenyl]carbonylamino]pentanedioic acid"
_chem_comp.type                                 non-polymer
_chem_comp.pdbx_type                            HETAIN
_chem_comp.formula                              "C17 H18 N6 O7"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        "(4-(3-(4-amino-6-hydroxypyrimidin-5-yl)ureido)benzoyl)-L-glutamic acid"
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2021-04-05
_chem_comp.pdbx_modified_date                   2021-08-06
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       418.361
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    J49
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       7EHJ
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 PDBJ
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
J49  C1   C1   C  0  1  Y  N  N  -59.355  24.309  23.313   7.167  -1.479   1.834  C1   J49   1  
J49  C3   C2   C  0  1  Y  N  N  -57.447  24.162  21.933   5.613   0.151   1.347  C3   J49   2  
J49  C4   C3   C  0  1  Y  N  N  -56.813  25.162  22.718   5.594  -0.276   0.021  C4   J49   3  
J49  C5   C4   C  0  1  Y  N  N  -57.449  25.711  23.784   6.412  -1.352  -0.338  C5   J49   4  
J49  C8   C5   C  0  1  N  N  N  -55.355  26.574  21.313   3.463   0.542  -0.665  C8   J49   5  
J49  C10  C6   C  0  1  Y  N  N  -53.617  27.874  20.029   1.278   1.132  -1.385  C10  J49   6  
J49  C11  C7   C  0  1  Y  N  N  -54.516  28.121  18.836   0.548   2.177  -1.943  C11  J49   7  
J49  C12  C8   C  0  1  Y  N  N  -54.154  29.015  17.943  -0.807   2.269  -1.719  C12  J49   8  
J49  C13  C9   C  0  1  Y  N  N  -52.848  29.773  18.108  -1.450   1.312  -0.930  C13  J49   9  
J49  C14  C10  C  0  1  Y  N  N  -52.060  29.555  19.146  -0.714   0.264  -0.370  C14  J49  10  
J49  C15  C11  C  0  1  Y  N  N  -52.476  28.527  20.186   0.641   0.177  -0.598  C15  J49  11  
J49  C16  C12  C  0  1  N  N  N  -52.422  30.782  17.056  -2.902   1.408  -0.687  C16  J49  12  
J49  C19  C13  C  0  1  N  N  S  -50.540  32.327  16.260  -4.963   0.579   0.315  C19  J49  13  
J49  C23  C14  C  0  1  N  N  N  -49.102  31.894  16.092  -5.218   1.500   1.481  C23  J49  14  
J49  C26  C15  C  0  1  N  N  N  -50.465  33.739  16.854  -5.520  -0.811   0.632  C26  J49  15  
J49  C27  C16  C  0  1  N  N  N  -51.839  34.291  17.229  -5.373  -1.711  -0.596  C27  J49  16  
J49  C28  C17  C  0  1  N  N  N  -51.719  35.328  18.358  -5.922  -3.079  -0.284  C28  J49  17  
J49  N2   N1   N  0  1  Y  N  N  -58.725  23.744  22.246   6.406  -0.472   2.214  N2   J49  18  
J49  N6   N2   N  0  1  Y  N  N  -58.726  25.293  24.102   7.179  -1.915   0.591  N6   J49  19  
J49  N9   N3   N  0  1  N  N  N  -53.995  26.906  21.011   2.649   1.038  -1.618  N9   J49  20  
J49  N17  N4   N  0  1  N  N  N  -51.091  31.356  17.190  -3.521   0.484   0.074  N17  J49  21  
J49  N21  N5   N  0  1  N  N  N  -55.484  25.563  22.332   4.771   0.353  -0.928  N21  J49  22  
J49  N22  N6   N  0  1  N  N  N  -56.780  26.719  24.565   6.431  -1.817  -1.646  N22  J49  23  
J49  O7   O1   O  0  1  N  N  N  -56.301  27.088  20.774   3.016   0.265   0.431  O7   J49  24  
J49  O18  O2   O  0  1  N  N  N  -53.151  31.047  16.152  -3.541   2.320  -1.174  O18  J49  25  
J49  O20  O3   O  0  1  N  N  N  -56.745  23.643  20.859   4.835   1.187   1.748  O20  J49  26  
J49  O24  O4   O  0  1  N  N  N  -48.558  31.162  16.959  -6.475   1.739   1.885  O24  J49  27  
J49  O25  O5   O  0  1  N  N  N  -48.444  32.272  15.105  -4.290   2.023   2.051  O25  J49  28  
J49  O29  O6   O  0  1  N  N  N  -50.879  35.171  19.285  -5.898  -4.041  -1.220  O29  J49  29  
J49  O30  O7   O  0  1  N  N  N  -52.469  36.338  18.364  -6.383  -3.311   0.808  O30  J49  30  
J49  H1   H1   H  0  1  N  N  N  -60.359  23.996  23.560   7.802  -1.959   2.564  H1   J49  31  
J49  H2   H2   H  0  1  N  N  N  -55.439  27.572  18.721   1.046   2.917  -2.553  H2   J49  32  
J49  H3   H3   H  0  1  N  N  N  -54.787  29.211  17.090  -1.372   3.080  -2.153  H3   J49  33  
J49  H4   H4   H  0  1  N  N  N  -51.134  30.099  19.254  -1.208  -0.478   0.241  H4   J49  34  
J49  H5   H5   H  0  1  N  N  N  -51.848  28.332  21.043   1.209  -0.635  -0.170  H5   J49  35  
J49  H6   H6   H  0  1  N  N  N  -51.072  32.331  15.297  -5.454   0.973  -0.574  H6   J49  36  
J49  H7   H7   H  0  1  N  N  N  -49.839  33.708  17.758  -4.967  -1.242   1.467  H7   J49  37  
J49  H8   H8   H  0  1  N  N  N  -50.006  34.409  16.112  -6.573  -0.728   0.898  H8   J49  38  
J49  H9   H9   H  0  1  N  N  N  -52.289  34.769  16.346  -5.926  -1.280  -1.431  H9   J49  39  
J49  H10  H10  H  0  1  N  N  N  -52.481  33.464  17.566  -4.319  -1.794  -0.862  H10  J49  40  
J49  H12  H12  H  0  1  N  N  N  -53.270  26.435  21.514   3.018   1.331  -2.467  H12  J49  41  
J49  H13  H13  H  0  1  N  N  N  -50.526  31.067  17.963  -3.011  -0.245   0.463  H13  J49  42  
J49  H14  H14  H  0  1  N  N  N  -54.677  25.153  22.757   5.144   0.651  -1.772  H14  J49  43  
J49  H15  H15  H  0  1  N  N  N  -57.379  27.018  25.308   5.873  -1.396  -2.319  H15  J49  44  
J49  H16  H16  H  0  1  N  N  N  -55.938  26.339  24.948   7.001  -2.564  -1.887  H16  J49  45  
J49  H17  H17  H  0  1  N  N  N  -47.656  30.994  16.712  -6.589   2.336   2.636  H17  J49  46  
J49  H18  H18  H  0  1  N  N  N  -50.943  35.895  19.897  -6.261  -4.903  -0.974  H18  J49  47  
J49  H11  H11  H  0  1  N  N  N  -57.278  22.993  20.416   5.224   2.057   1.587  H11  J49  48  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
J49  O25  C23  DOUB  N  N   1  
J49  C23  C19  SING  N  N   2  
J49  C23  O24  SING  N  N   3  
J49  O18  C16  DOUB  N  N   4  
J49  C19  C26  SING  N  N   5  
J49  C19  N17  SING  N  N   6  
J49  C26  C27  SING  N  N   7  
J49  C16  N17  SING  N  N   8  
J49  C16  C13  SING  N  N   9  
J49  C27  C28  SING  N  N  10  
J49  C12  C13  DOUB  Y  N  11  
J49  C12  C11  SING  Y  N  12  
J49  C13  C14  SING  Y  N  13  
J49  C28  O30  DOUB  N  N  14  
J49  C28  O29  SING  N  N  15  
J49  C11  C10  DOUB  Y  N  16  
J49  C14  C15  DOUB  Y  N  17  
J49  C10  C15  SING  Y  N  18  
J49  C10  N9   SING  N  N  19  
J49  O7   C8   DOUB  N  N  20  
J49  O20  C3   SING  N  N  21  
J49  N9   C8   SING  N  N  22  
J49  C8   N21  SING  N  N  23  
J49  C3   N2   SING  Y  N  24  
J49  C3   C4   DOUB  Y  N  25  
J49  N2   C1   DOUB  Y  N  26  
J49  N21  C4   SING  N  N  27  
J49  C4   C5   SING  Y  N  28  
J49  C1   N6   SING  Y  N  29  
J49  C5   N6   DOUB  Y  N  30  
J49  C5   N22  SING  N  N  31  
J49  C1   H1   SING  N  N  32  
J49  C11  H2   SING  N  N  33  
J49  C12  H3   SING  N  N  34  
J49  C14  H4   SING  N  N  35  
J49  C15  H5   SING  N  N  36  
J49  C19  H6   SING  N  N  37  
J49  C26  H7   SING  N  N  38  
J49  C26  H8   SING  N  N  39  
J49  C27  H9   SING  N  N  40  
J49  C27  H10  SING  N  N  41  
J49  N9   H12  SING  N  N  42  
J49  N17  H13  SING  N  N  43  
J49  N21  H14  SING  N  N  44  
J49  N22  H15  SING  N  N  45  
J49  N22  H16  SING  N  N  46  
J49  O24  H17  SING  N  N  47  
J49  O29  H18  SING  N  N  48  
J49  O20  H11  SING  N  N  49  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
J49  InChI             InChI                 1.03   "InChI=1S/C17H18N6O7/c18-13-12(15(27)20-7-19-13)23-17(30)21-9-3-1-8(2-4-9)14(26)22-10(16(28)29)5-6-11(24)25/h1-4,7,10H,5-6H2,(H,22,26)(H,24,25)(H,28,29)(H2,21,23,30)(H3,18,19,20,27)/t10-/m0/s1"  
J49  InChIKey          InChI                 1.03   OUMOQELZARCDHX-JTQLQIEISA-N  
J49  SMILES_CANONICAL  CACTVS                3.385  "Nc1ncnc(O)c1NC(=O)Nc2ccc(cc2)C(=O)N[C@@H](CCC(O)=O)C(O)=O"  
J49  SMILES            CACTVS                3.385  "Nc1ncnc(O)c1NC(=O)Nc2ccc(cc2)C(=O)N[CH](CCC(O)=O)C(O)=O"  
J49  SMILES_CANONICAL  "OpenEye OEToolkits"  2.0.7  "c1cc(ccc1C(=O)N[C@@H](CCC(=O)O)C(=O)O)NC(=O)Nc2c(ncnc2O)N"  
J49  SMILES            "OpenEye OEToolkits"  2.0.7  "c1cc(ccc1C(=O)NC(CCC(=O)O)C(=O)O)NC(=O)Nc2c(ncnc2O)N"  
#
_pdbx_chem_comp_identifier.comp_id          J49
_pdbx_chem_comp_identifier.type             "SYSTEMATIC NAME"
_pdbx_chem_comp_identifier.program          "OpenEye OEToolkits"
_pdbx_chem_comp_identifier.program_version  2.0.7
_pdbx_chem_comp_identifier.identifier       "(2~{S})-2-[[4-[(4-azanyl-6-oxidanyl-pyrimidin-5-yl)carbamoylamino]phenyl]carbonylamino]pentanedioic acid"
#
_pdbx_chem_comp_synonyms.ordinal     1
_pdbx_chem_comp_synonyms.comp_id     J49
_pdbx_chem_comp_synonyms.name        "(4-(3-(4-amino-6-hydroxypyrimidin-5-yl)ureido)benzoyl)-L-glutamic acid"
_pdbx_chem_comp_synonyms.provenance  AUTHOR
_pdbx_chem_comp_synonyms.type        ?
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
J49  "Create component"  2021-04-05  PDBJ  
J49  "Initial release"   2021-08-11  RCSB  
##
