data_GL9
#

_chem_comp.id                                   GL9
_chem_comp.name                                 "N-[(5S,7R,8S,9S,10R)-8,9,10-trihydroxy-7-(hydroxymethyl)-2,4-dioxo-6-oxa-1,3-diazaspiro[4.5]dec-3-yl]acetamide"
_chem_comp.type                                 D-saccharide
_chem_comp.pdbx_type                            ATOMS
_chem_comp.formula                              "C10 H15 N3 O8"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        "N-(8,9,10-TRIHYDROXY-7-HYDROXYMETHYL-2,4-DIOXO-6-OXA-1,3-DIAZA-SPIRO[4.5]DEC-3-YL-ACETAMIDE"
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2000-09-15
_chem_comp.pdbx_modified_date                   2020-07-17
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       305.241
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    GL9
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       ?
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       1FU4
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 EBI
#
_pdbx_chem_comp_synonyms.ordinal     1
_pdbx_chem_comp_synonyms.comp_id     GL9
_pdbx_chem_comp_synonyms.name        "N-(8,9,10-TRIHYDROXY-7-HYDROXYMETHYL-2,4-DIOXO-6-OXA-1,3-DIAZA-SPIRO[4.5]DEC-3-YL-ACETAMIDE"
_pdbx_chem_comp_synonyms.provenance  PDB
_pdbx_chem_comp_synonyms.type        ?
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
GL9  C1    C1    C  0  1  N  N  S  33.943  22.978  27.699  -0.087  -0.919  -0.363  C1    GL9   1  
GL9  C2    C2    C  0  1  N  N  R  34.100  23.196  26.175   1.350  -1.008  -0.866  C2    GL9   2  
GL9  O2    O2    O  0  1  N  N  N  34.222  24.567  25.939   2.248  -1.001   0.245  O2    GL9   3  
GL9  C3    C3    C  0  1  N  N  S  32.837  22.587  25.433   1.642   0.196  -1.768  C3    GL9   4  
GL9  O3    O3    O  0  1  N  N  N  32.922  22.609  24.032   2.924   0.042  -2.380  O3    GL9   5  
GL9  C4    C4    C  0  1  N  N  S  32.686  21.151  25.862   0.560   0.268  -2.852  C4    GL9   6  
GL9  O4    O4    O  0  1  N  N  N  31.601  20.638  25.190   0.731   1.459  -3.622  O4    GL9   7  
GL9  C5    C5    C  0  1  N  N  R  32.449  21.109  27.367  -0.816   0.284  -2.183  C5    GL9   8  
GL9  C6    C6    C  0  1  N  N  N  32.221  19.701  27.775  -1.900   0.401  -3.257  C6    GL9   9  
GL9  O6    O6    O  0  1  N  N  N  33.307  18.913  27.391  -3.186   0.424  -2.634  O6    GL9  10  
GL9  O5    O5    O  0  1  N  N  N  33.633  21.611  28.016  -1.008  -0.920  -1.444  O5    GL9  11  
GL9  N2    N2    N  0  1  N  N  N  35.182  23.324  28.277  -0.373  -2.027   0.559  N2    GL9  12  
GL9  C8    C8    C  0  1  N  N  N  34.977  24.377  29.070  -0.669  -1.467   1.747  C8    GL9  13  
GL9  O8    O8    O  0  1  N  N  N  35.947  24.948  29.559  -0.957  -2.104   2.741  O8    GL9  14  
GL9  N1    N1    N  0  1  N  N  N  33.708  24.790  29.261  -0.610  -0.130   1.711  N1    GL9  15  
GL9  C7    C7    C  0  1  N  N  N  33.040  23.932  28.458  -0.273   0.318   0.484  C7    GL9  16  
GL9  O7    O7    O  0  1  N  N  N  31.829  23.952  28.351  -0.140   1.472   0.137  O7    GL9  17  
GL9  N3    N3    N  0  1  N  N  N  33.320  25.703  29.979  -0.873   0.699   2.808  N3    GL9  18  
GL9  C9    C9    C  0  1  N  N  N  32.453  25.778  31.002   0.126   1.057   3.637  C9    GL9  19  
GL9  O9    O9    O  0  1  N  N  N  31.740  26.763  31.178   1.254   0.662   3.432  O9    GL9  20  
GL9  C10   C10   C  0  1  N  N  N  32.349  24.659  32.008  -0.155   1.950   4.818  C10   GL9  21  
GL9  H2    H2    H  0  1  N  N  N  35.009  22.683  25.784   1.481  -1.929  -1.434  H2    GL9  22  
GL9  HO2   HO2   H  0  1  N  Y  N  34.318  24.700  25.003   3.143  -1.053  -0.117  HO2   GL9  23  
GL9  H3    H3    H  0  1  N  N  N  31.966  23.224  25.715   1.626   1.110  -1.175  H3    GL9  24  
GL9  HO3   HO3   H  0  1  N  Y  N  32.165  22.244  23.587   3.058   0.815  -2.946  HO3   GL9  25  
GL9  H4    H4    H  0  1  N  N  N  33.598  20.553  25.630   0.638  -0.601  -3.504  H4    GL9  26  
GL9  HO4   HO4   H  0  1  N  Y  N  31.505  19.732  25.460   0.027   1.466  -4.286  HO4   GL9  27  
GL9  H5    H5    H  0  1  N  N  N  31.563  21.725  27.648  -0.881   1.137  -1.508  H5    GL9  28  
GL9  H61   H61   H  0  1  N  N  N  32.003  19.611  28.864  -1.754   1.322  -3.822  H61   GL9  29  
GL9  H62   H62   H  0  1  N  N  N  31.255  19.302  27.383  -1.837  -0.452  -3.931  H62   GL9  30  
GL9  HO6   HO6   H  0  1  N  Y  N  33.161  18.011  27.652  -3.839   0.498  -3.344  HO6   GL9  31  
GL9  HN2   HN2   H  0  1  N  N  N  35.912  23.485  27.583  -0.352  -2.974   0.352  HN2   GL9  32  
GL9  HN3   HN3   H  0  1  N  N  N  33.802  26.547  29.671  -1.776   1.015   2.972  HN3   GL9  33  
GL9  H101  H101  H  0  0  N  N  N  31.629  24.721  32.857   0.768   2.130   5.367  H101  GL9  34  
GL9  H102  H102  H  0  0  N  N  N  32.153  23.710  31.454  -0.560   2.899   4.467  H102  GL9  35  
GL9  H103  H103  H  0  0  N  N  N  33.365  24.471  32.426  -0.880   1.467   5.473  H103  GL9  36  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
GL9  C1   C2    SING  N  N   1  
GL9  C1   O5    SING  N  N   2  
GL9  C1   N2    SING  N  N   3  
GL9  C1   C7    SING  N  N   4  
GL9  C2   O2    SING  N  N   5  
GL9  C2   C3    SING  N  N   6  
GL9  C2   H2    SING  N  N   7  
GL9  O2   HO2   SING  N  N   8  
GL9  C3   O3    SING  N  N   9  
GL9  C3   C4    SING  N  N  10  
GL9  C3   H3    SING  N  N  11  
GL9  O3   HO3   SING  N  N  12  
GL9  C4   O4    SING  N  N  13  
GL9  C4   C5    SING  N  N  14  
GL9  C4   H4    SING  N  N  15  
GL9  O4   HO4   SING  N  N  16  
GL9  C5   C6    SING  N  N  17  
GL9  C5   O5    SING  N  N  18  
GL9  C5   H5    SING  N  N  19  
GL9  C6   O6    SING  N  N  20  
GL9  C6   H61   SING  N  N  21  
GL9  C6   H62   SING  N  N  22  
GL9  O6   HO6   SING  N  N  23  
GL9  N2   C8    SING  N  N  24  
GL9  N2   HN2   SING  N  N  25  
GL9  C8   O8    DOUB  N  N  26  
GL9  C8   N1    SING  N  N  27  
GL9  N1   C7    SING  N  N  28  
GL9  N1   N3    SING  N  N  29  
GL9  C7   O7    DOUB  N  N  30  
GL9  N3   C9    SING  N  N  31  
GL9  N3   HN3   SING  N  N  32  
GL9  C9   O9    DOUB  N  N  33  
GL9  C9   C10   SING  N  N  34  
GL9  C10  H101  SING  N  N  35  
GL9  C10  H102  SING  N  N  36  
GL9  C10  H103  SING  N  N  37  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
GL9  SMILES            ACDLabs               10.04  "O=C2N(C(=O)NC21OC(C(O)C(O)C1O)CO)NC(=O)C"  
GL9  SMILES_CANONICAL  CACTVS                3.341  "CC(=O)NN1C(=O)N[C@@]2(O[C@H](CO)[C@@H](O)[C@H](O)[C@H]2O)C1=O"  
GL9  SMILES            CACTVS                3.341  "CC(=O)NN1C(=O)N[C]2(O[CH](CO)[CH](O)[CH](O)[CH]2O)C1=O"  
GL9  SMILES_CANONICAL  "OpenEye OEToolkits"  1.5.0  "CC(=O)NN1C(=O)[C@@]2([C@@H]([C@H]([C@@H]([C@H](O2)CO)O)O)O)NC1=O"  
GL9  SMILES            "OpenEye OEToolkits"  1.5.0  "CC(=O)NN1C(=O)C2(C(C(C(C(O2)CO)O)O)O)NC1=O"  
GL9  InChI             InChI                 1.03   "InChI=1S/C10H15N3O8/c1-3(15)12-13-8(19)10(11-9(13)20)7(18)6(17)5(16)4(2-14)21-10/h4-7,14,16-18H,2H2,1H3,(H,11,20)(H,12,15)/t4-,5-,6+,7-,10+/m1/s1"  
GL9  InChIKey          InChI                 1.03   MAHIOGAAEAWGLR-UTAYWCBXSA-N  
#   #
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
GL9  "SYSTEMATIC NAME"  ACDLabs               10.04  "N-[(5S,7R,8S,9S,10R)-8,9,10-trihydroxy-7-(hydroxymethyl)-2,4-dioxo-6-oxa-1,3-diazaspiro[4.5]dec-3-yl]acetamide"  
GL9  "SYSTEMATIC NAME"  "OpenEye OEToolkits"  1.5.0  "N-[(5S,6R,7S,8S,9R)-6,7,8-trihydroxy-9-(hydroxymethyl)-2,4-dioxo-10-oxa-1,3-diazaspiro[4.5]decan-3-yl]ethanamide"  
#   #
loop_
_pdbx_chem_comp_feature.comp_id
_pdbx_chem_comp_feature.type
_pdbx_chem_comp_feature.value
_pdbx_chem_comp_feature.source
_pdbx_chem_comp_feature.support
GL9  "CARBOHYDRATE ISOMER"                  D         PDB  ?  
GL9  "CARBOHYDRATE RING"                    pyranose  PDB  ?  
GL9  "CARBOHYDRATE PRIMARY CARBONYL GROUP"  aldose    PDB  ?  
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
GL9  "Create component"          2000-09-15  EBI   
GL9  "Modify descriptor"         2011-06-04  RCSB  
GL9  "Other modification"        2020-07-03  RCSB  
GL9  "Modify name"               2020-07-17  RCSB  
GL9  "Modify synonyms"           2020-07-17  RCSB  
GL9  "Modify linking type"       2020-07-17  RCSB  
GL9  "Modify leaving atom flag"  2020-07-17  RCSB  
##
