data_GI9
# 
_chem_comp.id                                    GI9 
_chem_comp.name                                  "tert-butyl (2S)-6-azanyl-2-[[(2R,3S)-3-(1H-indol-3-yl)-2-[[4-(2-oxidanylidene-3H-benzimidazol-1-yl)piperidin-1-yl]carbonylamino]butanoyl]amino]hexanoate" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C35 H47 N7 O5" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         L-054,52 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2022-05-10 
_chem_comp.pdbx_modified_date                    2022-07-29 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        645.792 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     GI9 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        7XN9 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  PDBJ 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
GI9 N12  N1  N 0 1 N N N 19.133 48.389 47.076 -1.732  -6.424 1.463  N12  GI9 1  
GI9 C13  C1  C 0 1 N N N 17.417 43.719 59.277 -4.885  0.528  0.453  C13  GI9 2  
GI9 C14  C2  C 0 1 N N N 17.123 44.969 59.952 -4.518  1.922  0.966  C14  GI9 3  
GI9 C15  C3  C 0 1 N N N 16.608 43.535 58.051 -3.632  -0.167 -0.084 C15  GI9 4  
GI9 C16  C4  C 0 1 N N N 17.634 46.069 59.073 -3.510  1.790  2.113  C16  GI9 5  
GI9 C17  C5  C 0 1 N N N 16.150 44.850 57.460 -2.614  -0.322 1.051  C17  GI9 6  
GI9 C18  C6  C 0 1 Y N N 17.902 41.393 60.217 -7.155  0.102  -0.616 C18  GI9 7  
GI9 C19  C7  C 0 1 N N N 17.437 46.913 56.672 -1.108  1.472  1.762  C19  GI9 8  
GI9 C20  C8  C 0 1 N N R 17.311 47.798 54.413 1.298   1.237  1.461  C20  GI9 9  
GI9 C22  C9  C 0 1 N N N 16.083 42.492 61.223 -5.700  1.308  -1.782 C22  GI9 10 
GI9 C23  C10 C 0 1 Y N N 17.352 40.518 61.234 -7.752  0.459  -1.827 C23  GI9 11 
GI9 C24  C11 C 0 1 Y N N 16.323 49.211 52.641 3.095   2.716  0.603  C24  GI9 12 
GI9 C25  C12 C 0 1 Y N N 19.100 40.983 59.370 -7.858  -0.665 0.301  C25  GI9 13 
GI9 C26  C13 C 0 1 N N N 18.204 47.080 53.468 2.241   0.067  1.347  C26  GI9 14 
GI9 C27  C14 C 0 1 N N N 15.307 49.011 54.871 0.743   3.503  0.567  C27  GI9 15 
GI9 C28  C15 C 0 1 Y N N 17.976 39.141 61.476 -9.045  0.045  -2.107 C28  GI9 16 
GI9 C29  C16 C 0 1 Y N N 15.597 49.241 51.525 4.157   2.682  -0.405 C29  GI9 17 
GI9 C21  C17 C 0 1 N N S 16.050 48.271 53.784 1.662   2.290  0.412  C21  GI9 18 
GI9 C30  C18 C 0 1 N N S 20.447 46.894 52.456 2.769   -2.180 0.567  C30  GI9 19 
GI9 C31  C19 C 0 1 Y N N 17.294 50.166 52.555 3.641   3.195  1.732  C31  GI9 20 
GI9 C32  C20 C 0 1 Y N N 19.735 39.629 59.588 -9.146  -1.073 0.012  C32  GI9 21 
GI9 C33  C21 C 0 1 N N N 20.824 47.815 51.326 1.949   -3.401 0.147  C33  GI9 22 
GI9 C34  C22 C 0 1 Y N N 16.105 50.212 50.718 5.312   3.172  0.230  C34  GI9 23 
GI9 C35  C23 C 0 1 Y N N 19.171 38.700 60.650 -9.737  -0.718 -1.188 C35  GI9 24 
GI9 C36  C24 C 0 1 N N N 20.155 47.212 50.109 0.906   -3.711 1.223  C36  GI9 25 
GI9 C37  C25 C 0 1 Y N N 14.375 48.388 51.093 4.212   2.287  -1.743 C37  GI9 26 
GI9 C38  C26 C 0 1 N N N 21.668 46.501 53.271 3.891   -1.965 -0.416 C38  GI9 27 
GI9 C39  C27 C 0 1 N N N 19.244 48.227 49.472 0.171   -5.004 0.864  C39  GI9 28 
GI9 C40  C28 C 0 1 Y N N 15.464 50.483 49.333 6.499   3.263  -0.490 C40  GI9 29 
GI9 C41  C29 C 0 1 N N N 23.614 45.204 53.613 5.862   -2.649 -1.568 C41  GI9 30 
GI9 C42  C30 C 0 1 Y N N 13.751 48.633 49.772 5.389   2.380  -2.430 C42  GI9 31 
GI9 C43  C31 C 0 1 Y N N 14.290 49.681 48.901 6.530   2.872  -1.810 C43  GI9 32 
GI9 C44  C32 C 0 1 N N N 18.703 47.597 48.202 -0.952  -5.248 1.873  C44  GI9 33 
GI9 C45  C33 C 0 1 N N N 24.398 44.075 53.006 5.241   -2.398 -2.944 C45  GI9 34 
GI9 C46  C34 C 0 1 N N N 23.175 44.778 54.989 6.809   -3.848 -1.647 C46  GI9 35 
GI9 C47  C35 C 0 1 N N N 24.464 46.442 53.767 6.644   -1.410 -1.128 C47  GI9 36 
GI9 N06  N2  N 0 1 N N N 17.088 45.976 57.686 -2.364  0.997  1.646  N06  GI9 37 
GI9 N07  N3  N 0 1 N N N 17.127 42.593 60.212 -5.874  0.649  -0.622 N07  GI9 38 
GI9 N08  N4  N 0 1 N N N 16.902 46.812 55.362 -0.076  0.781  1.239  N08  GI9 39 
GI9 N09  N5  N 0 1 N N N 16.235 41.192 61.856 -6.816  1.216  -2.529 N09  GI9 40 
GI9 N10  N6  N 0 1 N N N 19.521 47.578 53.309 1.906   -0.997 0.590  N10  GI9 41 
GI9 N11  N7  N 0 1 Y N N 17.153 50.777 51.354 4.964   3.475  1.527  N11  GI9 42 
GI9 O01  O1  O 0 1 N N N 18.174 47.778 56.904 -0.906  2.523  2.338  O01  GI9 43 
GI9 O02  O2  O 0 1 N N N 15.269 43.285 61.492 -4.688  1.903  -2.105 O02  GI9 44 
GI9 O03  O3  O 0 1 N N N 17.850 46.135 52.920 3.302   0.083  1.935  O03  GI9 45 
GI9 O04  O4  O 0 1 N N N 22.518 45.518 52.808 4.811   -2.924 -0.605 O04  GI9 46 
GI9 O05  O5  O 0 1 N N N 21.883 47.040 54.297 3.962   -0.930 -1.035 O05  GI9 47 
GI9 H122 H1  H 0 0 N N N 18.783 47.985 46.231 -2.427  -6.657 2.156  H122 GI9 48 
GI9 H121 H3  H 0 0 N N N 18.782 49.321 47.170 -2.157  -6.278 0.559  H121 GI9 49 
GI9 H131 H4  H 0 0 N N N 18.483 43.691 59.009 -5.305  -0.060 1.268  H131 GI9 50 
GI9 H142 H5  H 0 0 N N N 17.628 45.000 60.929 -4.074  2.503  0.157  H142 GI9 51 
GI9 H141 H6  H 0 0 N N N 16.038 45.074 60.097 -5.415  2.425  1.327  H141 GI9 52 
GI9 H152 H7  H 0 0 N N N 15.722 42.932 58.299 -3.898  -1.150 -0.471 H152 GI9 53 
GI9 H151 H8  H 0 0 N N N 17.215 43.004 57.303 -3.197  0.433  -0.883 H151 GI9 54 
GI9 H162 H9  H 0 0 N N N 18.731 46.007 59.028 -3.170  2.780  2.416  H162 GI9 55 
GI9 H161 H10 H 0 0 N N N 17.339 47.036 59.507 -3.982  1.291  2.959  H161 GI9 56 
GI9 H172 H11 H 0 0 N N N 15.181 45.112 57.910 -3.012  -0.996 1.809  H172 GI9 57 
GI9 H171 H12 H 0 0 N N N 16.026 44.716 56.375 -1.683  -0.726 0.653  H171 GI9 58 
GI9 H201 H13 H 0 0 N N N 17.843 48.631 54.896 1.380   1.674  2.457  H201 GI9 59 
GI9 H251 H14 H 0 0 N N N 19.492 41.654 58.620 -7.399  -0.943 1.238  H251 GI9 60 
GI9 H271 H15 H 0 0 N N N 15.105 48.327 55.709 1.002   4.253  -0.181 H271 GI9 61 
GI9 H272 H16 H 0 0 N N N 15.919 49.854 55.225 -0.293  3.194  0.428  H272 GI9 62 
GI9 H273 H17 H 0 0 N N N 14.355 49.391 54.471 0.866   3.927  1.563  H273 GI9 63 
GI9 H281 H18 H 0 0 N N N 17.568 38.486 62.231 -9.510  0.320  -3.043 H281 GI9 64 
GI9 H211 H19 H 0 0 N N N 15.453 47.416 53.435 1.539   1.866  -0.585 H211 GI9 65 
GI9 H301 H20 H 0 0 N N N 19.984 45.986 52.043 3.184   -2.346 1.561  H301 GI9 66 
GI9 H311 H21 H 0 0 N N N 18.037 50.393 53.305 3.114   3.339  2.664  H311 GI9 67 
GI9 H321 H22 H 0 0 N N N 20.583 39.324 58.993 -9.693  -1.670 0.726  H321 GI9 68 
GI9 H331 H23 H 0 0 N N N 21.916 47.844 51.195 1.446   -3.194 -0.798 H331 GI9 69 
GI9 H332 H24 H 0 0 N N N 20.450 48.832 51.512 2.611   -4.259 0.024  H332 GI9 70 
GI9 H351 H25 H 0 0 N N N 19.618 37.731 60.816 -10.745 -1.040 -1.407 H351 GI9 71 
GI9 H361 H26 H 0 0 N N N 19.567 46.334 50.413 1.403   -3.831 2.186  H361 GI9 72 
GI9 H362 H27 H 0 0 N N N 20.924 46.905 49.384 0.191   -2.891 1.282  H362 GI9 73 
GI9 H371 H28 H 0 0 N N N 13.984 47.624 51.748 3.326   1.910  -2.234 H371 GI9 74 
GI9 H392 H29 H 0 0 N N N 19.806 49.141 49.231 -0.252  -4.915 -0.137 H392 GI9 75 
GI9 H391 H30 H 0 0 N N N 18.417 48.474 50.154 0.871   -5.839 0.889  H391 GI9 76 
GI9 H401 H31 H 0 0 N N N 15.867 51.249 48.687 7.393   3.638  -0.015 H401 GI9 77 
GI9 H421 H32 H 0 0 N N N 12.904 48.043 49.453 5.431   2.075  -3.465 H421 GI9 78 
GI9 H431 H33 H 0 0 N N N 13.832 49.871 47.941 7.452   2.943  -2.367 H431 GI9 79 
GI9 H442 H34 H 0 0 N N N 17.604 47.572 48.240 -1.604  -4.375 1.910  H442 GI9 80 
GI9 H441 H35 H 0 0 N N N 19.089 46.572 48.103 -0.523  -5.424 2.859  H441 GI9 81 
GI9 H451 H36 H 0 0 N N N 25.258 43.838 53.649 6.031   -2.191 -3.666 H451 GI9 82 
GI9 H452 H37 H 0 0 N N N 23.753 43.189 52.914 4.684   -3.280 -3.257 H452 GI9 83 
GI9 H453 H38 H 0 0 N N N 24.757 44.372 52.009 4.567   -1.543 -2.887 H453 GI9 84 
GI9 H462 H39 H 0 0 N N N 24.059 44.538 55.598 7.251   -4.027 -0.667 H462 GI9 85 
GI9 H461 H40 H 0 0 N N N 22.613 45.596 55.464 6.251   -4.731 -1.960 H461 GI9 86 
GI9 H463 H41 H 0 0 N N N 22.532 43.889 54.910 7.598   -3.641 -2.369 H463 GI9 87 
GI9 H473 H42 H 0 0 N N N 25.334 46.213 54.400 7.434   -1.203 -1.850 H473 GI9 88 
GI9 H471 H43 H 0 0 N N N 24.808 46.776 52.777 5.970   -0.555 -1.072 H471 GI9 89 
GI9 H472 H44 H 0 0 N N N 23.869 47.239 54.236 7.087   -1.589 -0.148 H472 GI9 90 
GI9 H081 H45 H 0 0 N N N 16.266 46.082 55.114 -0.243  -0.019 0.716  H081 GI9 91 
GI9 H091 H46 H 0 0 N N N 15.666 40.828 62.593 -6.946  1.605  -3.407 H091 GI9 92 
GI9 H101 H47 H 0 0 N N N 19.804 48.407 53.792 1.094   -0.979 0.060  H101 GI9 93 
GI9 H111 H48 H 0 0 N N N 17.725 51.517 51.001 5.568   3.834  2.197  H111 GI9 94 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
GI9 N12 C44  SING N N 1  
GI9 C44 C39  SING N N 2  
GI9 C43 C40  DOUB Y N 3  
GI9 C43 C42  SING Y N 4  
GI9 C40 C34  SING Y N 5  
GI9 C39 C36  SING N N 6  
GI9 C42 C37  DOUB Y N 7  
GI9 C36 C33  SING N N 8  
GI9 C34 N11  SING Y N 9  
GI9 C34 C29  DOUB Y N 10 
GI9 C37 C29  SING Y N 11 
GI9 C33 C30  SING N N 12 
GI9 N11 C31  SING Y N 13 
GI9 C29 C24  SING Y N 14 
GI9 C30 C38  SING N N 15 
GI9 C30 N10  SING N N 16 
GI9 C31 C24  DOUB Y N 17 
GI9 C24 C21  SING N N 18 
GI9 O04 C38  SING N N 19 
GI9 O04 C41  SING N N 20 
GI9 O03 C26  DOUB N N 21 
GI9 C45 C41  SING N N 22 
GI9 C38 O05  DOUB N N 23 
GI9 N10 C26  SING N N 24 
GI9 C26 C20  SING N N 25 
GI9 C41 C47  SING N N 26 
GI9 C41 C46  SING N N 27 
GI9 C21 C20  SING N N 28 
GI9 C21 C27  SING N N 29 
GI9 C20 N08  SING N N 30 
GI9 N08 C19  SING N N 31 
GI9 C19 O01  DOUB N N 32 
GI9 C19 N06  SING N N 33 
GI9 C17 N06  SING N N 34 
GI9 C17 C15  SING N N 35 
GI9 N06 C16  SING N N 36 
GI9 C15 C13  SING N N 37 
GI9 C16 C14  SING N N 38 
GI9 C13 C14  SING N N 39 
GI9 C13 N07  SING N N 40 
GI9 C25 C32  DOUB Y N 41 
GI9 C25 C18  SING Y N 42 
GI9 C32 C35  SING Y N 43 
GI9 N07 C18  SING N N 44 
GI9 N07 C22  SING N N 45 
GI9 C18 C23  DOUB Y N 46 
GI9 C35 C28  DOUB Y N 47 
GI9 C22 O02  DOUB N N 48 
GI9 C22 N09  SING N N 49 
GI9 C23 C28  SING Y N 50 
GI9 C23 N09  SING N N 51 
GI9 N12 H122 SING N N 52 
GI9 N12 H121 SING N N 53 
GI9 C13 H131 SING N N 54 
GI9 C14 H142 SING N N 55 
GI9 C14 H141 SING N N 56 
GI9 C15 H152 SING N N 57 
GI9 C15 H151 SING N N 58 
GI9 C16 H162 SING N N 59 
GI9 C16 H161 SING N N 60 
GI9 C17 H172 SING N N 61 
GI9 C17 H171 SING N N 62 
GI9 C20 H201 SING N N 63 
GI9 C25 H251 SING N N 64 
GI9 C27 H271 SING N N 65 
GI9 C27 H272 SING N N 66 
GI9 C27 H273 SING N N 67 
GI9 C28 H281 SING N N 68 
GI9 C21 H211 SING N N 69 
GI9 C30 H301 SING N N 70 
GI9 C31 H311 SING N N 71 
GI9 C32 H321 SING N N 72 
GI9 C33 H331 SING N N 73 
GI9 C33 H332 SING N N 74 
GI9 C35 H351 SING N N 75 
GI9 C36 H361 SING N N 76 
GI9 C36 H362 SING N N 77 
GI9 C37 H371 SING N N 78 
GI9 C39 H392 SING N N 79 
GI9 C39 H391 SING N N 80 
GI9 C40 H401 SING N N 81 
GI9 C42 H421 SING N N 82 
GI9 C43 H431 SING N N 83 
GI9 C44 H442 SING N N 84 
GI9 C44 H441 SING N N 85 
GI9 C45 H451 SING N N 86 
GI9 C45 H452 SING N N 87 
GI9 C45 H453 SING N N 88 
GI9 C46 H462 SING N N 89 
GI9 C46 H461 SING N N 90 
GI9 C46 H463 SING N N 91 
GI9 C47 H473 SING N N 92 
GI9 C47 H471 SING N N 93 
GI9 C47 H472 SING N N 94 
GI9 N08 H081 SING N N 95 
GI9 N09 H091 SING N N 96 
GI9 N10 H101 SING N N 97 
GI9 N11 H111 SING N N 98 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
GI9 InChI            InChI                1.03  "InChI=1S/C35H47N7O5/c1-22(25-21-37-26-12-6-5-11-24(25)26)30(31(43)38-28(14-9-10-18-36)32(44)47-35(2,3)4)40-33(45)41-19-16-23(17-20-41)42-29-15-8-7-13-27(29)39-34(42)46/h5-8,11-13,15,21-23,28,30,37H,9-10,14,16-20,36H2,1-4H3,(H,38,43)(H,39,46)(H,40,45)/t22-,28-,30+/m0/s1" 
GI9 InChIKey         InChI                1.03  WFCIXKAZBUIFTR-PKIMSIDOSA-N                                                                                                                                                                                                                                                     
GI9 SMILES_CANONICAL CACTVS               3.385 "C[C@H]([C@@H](NC(=O)N1CCC(CC1)N2C(=O)Nc3ccccc23)C(=O)N[C@@H](CCCCN)C(=O)OC(C)(C)C)c4c[nH]c5ccccc45"                                                                                                                                                                            
GI9 SMILES           CACTVS               3.385 "C[CH]([CH](NC(=O)N1CCC(CC1)N2C(=O)Nc3ccccc23)C(=O)N[CH](CCCCN)C(=O)OC(C)(C)C)c4c[nH]c5ccccc45"                                                                                                                                                                                 
GI9 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "C[C@@H](c1c[nH]c2c1cccc2)[C@H](C(=O)N[C@@H](CCCCN)C(=O)OC(C)(C)C)NC(=O)N3CCC(CC3)N4c5ccccc5NC4=O"                                                                                                                                                                              
GI9 SMILES           "OpenEye OEToolkits" 2.0.7 "CC(c1c[nH]c2c1cccc2)C(C(=O)NC(CCCCN)C(=O)OC(C)(C)C)NC(=O)N3CCC(CC3)N4c5ccccc5NC4=O"                                                                                                                                                                                            
# 
_pdbx_chem_comp_identifier.comp_id           GI9 
_pdbx_chem_comp_identifier.type              "SYSTEMATIC NAME" 
_pdbx_chem_comp_identifier.program           "OpenEye OEToolkits" 
_pdbx_chem_comp_identifier.program_version   2.0.7 
_pdbx_chem_comp_identifier.identifier        "~{tert}-butyl (2~{S})-6-azanyl-2-[[(2~{R},3~{S})-3-(1~{H}-indol-3-yl)-2-[[4-(2-oxidanylidene-3~{H}-benzimidazol-1-yl)piperidin-1-yl]carbonylamino]butanoyl]amino]hexanoate" 
# 
_pdbx_chem_comp_synonyms.ordinal      1 
_pdbx_chem_comp_synonyms.comp_id      GI9 
_pdbx_chem_comp_synonyms.name         L-054,52 
_pdbx_chem_comp_synonyms.provenance   AUTHOR 
_pdbx_chem_comp_synonyms.type         ? 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
GI9 "Create component" 2022-05-10 PDBJ 
GI9 "Initial release"  2022-08-03 RCSB 
# 
