data_EM9
# 
_chem_comp.id                                    EM9 
_chem_comp.name                                  "N-butyl-11-[(7alpha,9beta,13alpha,14beta,16alpha,17alpha)-16-chloro-3,17-dihydroxyestra-1,3,5(10)-trien-7-yl]-N-methylundecanamide" 
_chem_comp.type                                  NON-POLYMER 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C34 H54 Cl N O3" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2018-06-21 
_chem_comp.pdbx_modified_date                    2018-09-07 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        560.250 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     EM9 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   Y 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        6DTP 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
EM9 CAL C1  C  0 1 N N N 14.619 -7.451  9.413  -2.860 -0.164 0.327  CAL  EM9 1  
EM9 CAK C2  C  0 1 N N R 15.273 -7.049  8.092  -4.079 -0.348 1.232  CAK  EM9 2  
EM9 CAJ C3  C  0 1 N N R 16.801 -6.979  8.180  -5.352 -0.008 0.457  CAJ  EM9 3  
EM9 CBD C4  C  0 1 N N N 14.855 -8.055  7.020  -4.170 -1.805 1.686  CBD  EM9 4  
EM9 CBE C5  C  0 1 Y N N 15.699 -9.322  7.043  -4.566 -2.708 0.548  CBE  EM9 5  
EM9 CBF C6  C  0 1 Y N N 15.314 -10.359 6.184  -4.370 -4.073 0.710  CBF  EM9 6  
EM9 CBG C7  C  0 1 Y N N 16.040 -11.549 6.140  -4.721 -4.960 -0.292 CBG  EM9 7  
EM9 OBH O1  O  0 1 N N N 15.657 -12.563 5.317  -4.523 -6.294 -0.124 OBH  EM9 8  
EM9 CBI C8  C  0 1 Y N N 17.162 -11.698 6.947  -5.277 -4.481 -1.470 CBI  EM9 9  
EM9 CBJ C9  C  0 1 Y N N 17.557 -10.664 7.805  -5.467 -3.125 -1.632 CBJ  EM9 10 
EM9 CBK C10 C  0 1 Y N N 16.842 -9.450  7.864  -5.108 -2.235 -0.629 CBK  EM9 11 
EM9 CBL C11 C  0 1 N N S 17.226 -8.322  8.798  -5.311 -0.768 -0.874 CBL  EM9 12 
EM9 C49 C12 C  0 1 N N N 18.683 -8.283  9.225  -6.553 -0.498 -1.710 C49  EM9 13 
EM9 CAB C13 C  0 1 N N N 19.063 -7.051  10.065 -6.730 1.015  -1.946 CAB  EM9 14 
EM9 CAC C14 C  0 1 N N S 18.836 -5.772  9.275  -6.793 1.686  -0.590 CAC  EM9 15 
EM9 CAD C15 C  0 1 N N S 17.345 -5.745  8.936  -5.429 1.467  0.121  CAD  EM9 16 
EM9 C9  C16 C  0 1 N N N 19.791 -5.753  8.072  -7.901 1.047  0.248  C9   EM9 17 
EM9 CAH C17 C  0 1 N N R 18.978 -4.431  9.992  -6.954 3.202  -0.580 CAH  EM9 18 
EM9 OAI O2  O  0 1 N N N 20.343 -3.990  10.112 -8.337 3.553  -0.493 OAI  EM9 19 
EM9 CAF C18 C  0 1 N N R 18.115 -3.477  9.146  -6.197 3.686  0.682  CAF  EM9 20 
EM9 CL  CL1 CL 0 0 N N N 17.162 -2.330  10.141 -4.923 4.875  0.222  CLAG EM9 21 
EM9 CAE C19 C  0 1 N N N 17.174 -4.360  8.314  -5.546 2.424  1.312  CAE  EM9 22 
EM9 H1  H1  H  0 1 N N N 14.568 -8.528  9.630  -2.900 -0.887 -0.488 H1   EM9 23 
EM9 H2  H2  H  0 1 N N N 14.952 -6.912  10.312 -2.860 0.846  -0.082 H2   EM9 24 
EM9 H4  H4  H  0 1 N N N 14.896 -6.057  7.804  -3.993 0.303  2.102  H4   EM9 25 
EM9 H5  H5  H  0 1 N N N 17.196 -6.942  7.154  -6.228 -0.312 1.031  H5   EM9 26 
EM9 H6  H6  H  0 1 N N N 14.959 -7.581  6.033  -3.200 -2.120 2.070  H6   EM9 27 
EM9 H7  H7  H  0 1 N N N 13.803 -8.330  7.186  -4.911 -1.886 2.481  H7   EM9 28 
EM9 H8  H8  H  0 1 N N N 14.448 -10.236 5.551  -3.938 -4.446 1.627  H8   EM9 29 
EM9 H9  H9  H  0 1 N N N 16.258 -13.293 5.412  -5.273 -6.756 0.274  H9   EM9 30 
EM9 H10 H10 H  0 1 N N N 17.731 -12.615 6.912  -5.558 -5.166 -2.256 H10  EM9 31 
EM9 H11 H11 H  0 1 N N N 18.425 -10.799 8.433  -5.900 -2.752 -2.549 H11  EM9 32 
EM9 H12 H12 H  0 1 N N N 16.630 -8.449  9.714  -4.454 -0.403 -1.441 H12  EM9 33 
EM9 H13 H13 H  0 1 N N N 18.892 -9.184  9.821  -6.457 -1.002 -2.671 H13  EM9 34 
EM9 H14 H14 H  0 1 N N N 19.308 -8.289  8.320  -7.428 -0.885 -1.188 H14  EM9 35 
EM9 H15 H15 H  0 1 N N N 18.444 -7.029  10.974 -5.882 1.402  -2.511 H15  EM9 36 
EM9 H16 H16 H  0 1 N N N 20.124 -7.119  10.346 -7.654 1.198  -2.494 H16  EM9 37 
EM9 H17 H17 H  0 1 N N N 16.812 -5.718  9.898  -4.605 1.751  -0.534 H17  EM9 38 
EM9 H18 H18 H  0 1 N N N 20.831 -5.775  8.429  -8.871 1.289  -0.186 H18  EM9 39 
EM9 H19 H19 H  0 1 N N N 19.602 -6.633  7.440  -7.769 -0.035 0.261  H19  EM9 40 
EM9 H20 H20 H  0 1 N N N 19.624 -4.837  7.486  -7.853 1.431  1.268  H20  EM9 41 
EM9 H21 H21 H  0 1 N N N 18.525 -4.517  10.991 -6.511 3.635  -1.477 H21  EM9 42 
EM9 H22 H22 H  0 1 N N N 20.831 -4.610  10.641 -8.502 4.505  -0.483 H22  EM9 43 
EM9 H23 H23 H  0 1 N N N 18.755 -2.877  8.483  -6.895 4.139  1.386  H23  EM9 44 
EM9 H24 H24 H  0 1 N N N 17.472 -4.365  7.255  -6.190 2.002  2.084  H24  EM9 45 
EM9 H25 H25 H  0 1 N N N 16.133 -4.016  8.400  -4.562 2.659  1.716  H25  EM9 46 
EM9 C1  C20 C  0 1 N N N ?      ?       ?      -1.583 -0.385 1.141  C1   EM9 47 
EM9 C2  C21 C  0 1 N N N ?      ?       ?      -0.363 -0.201 0.236  C2   EM9 48 
EM9 C3  C22 C  0 1 N N N ?      ?       ?      0.914  -0.422 1.050  C3   EM9 49 
EM9 C4  C23 C  0 1 N N N ?      ?       ?      2.134  -0.238 0.145  C4   EM9 50 
EM9 C5  C24 C  0 1 N N N ?      ?       ?      3.410  -0.458 0.958  C5   EM9 51 
EM9 C6  C25 C  0 1 N N N ?      ?       ?      4.630  -0.274 0.053  C6   EM9 52 
EM9 C7  C26 C  0 1 N N N ?      ?       ?      5.907  -0.495 0.867  C7   EM9 53 
EM9 C8  C27 C  0 1 N N N ?      ?       ?      7.127  -0.311 -0.038 C8   EM9 54 
EM9 C10 C28 C  0 1 N N N ?      ?       ?      8.403  -0.531 0.776  C10  EM9 55 
EM9 C11 C29 C  0 1 N N N ?      ?       ?      9.605  -0.350 -0.116 C11  EM9 56 
EM9 N1  N1  N  0 1 N N N ?      ?       ?      10.846 -0.497 0.388  N1   EM9 57 
EM9 O1  O3  O  0 1 N N N ?      ?       ?      9.455  -0.072 -1.287 O1   EM9 58 
EM9 C13 C30 C  0 1 N N N ?      ?       ?      12.014 -0.321 -0.479 C13  EM9 59 
EM9 C14 C31 C  0 1 N N N ?      ?       ?      12.453 1.144  -0.451 C14  EM9 60 
EM9 C15 C32 C  0 1 N N N ?      ?       ?      13.673 1.328  -1.356 C15  EM9 61 
EM9 C16 C33 C  0 1 N N N ?      ?       ?      14.112 2.793  -1.329 C16  EM9 62 
EM9 C17 C34 C  0 1 N N N ?      ?       ?      11.028 -0.833 1.802  C17  EM9 63 
EM9 H3  H3  H  0 1 N N N ?      ?       ?      -1.542 0.337  1.957  H3   EM9 64 
EM9 H26 H26 H  0 1 N N N ?      ?       ?      -1.583 -1.395 1.550  H26  EM9 65 
EM9 H27 H27 H  0 1 N N N ?      ?       ?      -0.403 -0.923 -0.579 H27  EM9 66 
EM9 H28 H28 H  0 1 N N N ?      ?       ?      -0.363 0.809  -0.173 H28  EM9 67 
EM9 H29 H29 H  0 1 N N N ?      ?       ?      0.954  0.301  1.865  H29  EM9 68 
EM9 H30 H30 H  0 1 N N N ?      ?       ?      0.914  -1.432 1.459  H30  EM9 69 
EM9 H31 H31 H  0 1 N N N ?      ?       ?      2.093  -0.960 -0.671 H31  EM9 70 
EM9 H32 H32 H  0 1 N N N ?      ?       ?      2.133  0.773  -0.265 H32  EM9 71 
EM9 H33 H33 H  0 1 N N N ?      ?       ?      3.451  0.264  1.774  H33  EM9 72 
EM9 H34 H34 H  0 1 N N N ?      ?       ?      3.410  -1.469 1.367  H34  EM9 73 
EM9 H35 H35 H  0 1 N N N ?      ?       ?      4.590  -0.997 -0.762 H35  EM9 74 
EM9 H36 H36 H  0 1 N N N ?      ?       ?      4.630  0.736  -0.356 H36  EM9 75 
EM9 H37 H37 H  0 1 N N N ?      ?       ?      5.947  0.228  1.682  H37  EM9 76 
EM9 H38 H38 H  0 1 N N N ?      ?       ?      5.907  -1.505 1.276  H38  EM9 77 
EM9 H39 H39 H  0 1 N N N ?      ?       ?      7.086  -1.033 -0.854 H39  EM9 78 
EM9 H40 H40 H  0 1 N N N ?      ?       ?      7.126  0.699  -0.447 H40  EM9 79 
EM9 H41 H41 H  0 1 N N N ?      ?       ?      8.444  0.191  1.591  H41  EM9 80 
EM9 H42 H42 H  0 1 N N N ?      ?       ?      8.403  -1.542 1.185  H42  EM9 81 
EM9 H43 H43 H  0 1 N N N ?      ?       ?      12.829 -0.951 -0.123 H43  EM9 82 
EM9 H44 H44 H  0 1 N N N ?      ?       ?      11.755 -0.604 -1.499 H44  EM9 83 
EM9 H45 H45 H  0 1 N N N ?      ?       ?      11.638 1.775  -0.807 H45  EM9 84 
EM9 H46 H46 H  0 1 N N N ?      ?       ?      12.712 1.427  0.569  H46  EM9 85 
EM9 H47 H47 H  0 1 N N N ?      ?       ?      14.488 0.698  -1.000 H47  EM9 86 
EM9 H48 H48 H  0 1 N N N ?      ?       ?      13.414 1.045  -2.377 H48  EM9 87 
EM9 H49 H49 H  0 1 N N N ?      ?       ?      14.981 2.924  -1.974 H49  EM9 88 
EM9 H50 H50 H  0 1 N N N ?      ?       ?      13.297 3.424  -1.685 H50  EM9 89 
EM9 H51 H51 H  0 1 N N N ?      ?       ?      14.371 3.076  -0.308 H51  EM9 90 
EM9 H52 H52 H  0 1 N N N ?      ?       ?      11.049 -1.917 1.919  H52  EM9 91 
EM9 H53 H53 H  0 1 N N N ?      ?       ?      11.967 -0.411 2.159  H53  EM9 92 
EM9 H54 H54 H  0 1 N N N ?      ?       ?      10.201 -0.422 2.382  H54  EM9 93 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
EM9 OBH CBG SING N N 1  
EM9 CBG CBF DOUB Y N 2  
EM9 CBG CBI SING Y N 3  
EM9 CBF CBE SING Y N 4  
EM9 CBI CBJ DOUB Y N 5  
EM9 CBD CBE SING N N 6  
EM9 CBD CAK SING N N 7  
EM9 CBE CBK DOUB Y N 8  
EM9 CBJ CBK SING Y N 9  
EM9 CBK CBL SING N N 10 
EM9 C9  CAC SING N N 11 
EM9 CAK CAJ SING N N 12 
EM9 CAK CAL SING N N 13 
EM9 CAJ CBL SING N N 14 
EM9 CAJ CAD SING N N 15 
EM9 CAE CAD SING N N 16 
EM9 CAE CAF SING N N 17 
EM9 CBL C49 SING N N 18 
EM9 CAD CAC SING N N 19 
EM9 CAF CAH SING N N 20 
EM9 CAF CL  SING N N 21 
EM9 C49 CAB SING N N 22 
EM9 CAC CAH SING N N 23 
EM9 CAC CAB SING N N 24 
EM9 CAH OAI SING N N 25 
EM9 CAL H1  SING N N 26 
EM9 CAL H2  SING N N 27 
EM9 CAK H4  SING N N 28 
EM9 CAJ H5  SING N N 29 
EM9 CBD H6  SING N N 30 
EM9 CBD H7  SING N N 31 
EM9 CBF H8  SING N N 32 
EM9 OBH H9  SING N N 33 
EM9 CBI H10 SING N N 34 
EM9 CBJ H11 SING N N 35 
EM9 CBL H12 SING N N 36 
EM9 C49 H13 SING N N 37 
EM9 C49 H14 SING N N 38 
EM9 CAB H15 SING N N 39 
EM9 CAB H16 SING N N 40 
EM9 CAD H17 SING N N 41 
EM9 C9  H18 SING N N 42 
EM9 C9  H19 SING N N 43 
EM9 C9  H20 SING N N 44 
EM9 CAH H21 SING N N 45 
EM9 OAI H22 SING N N 46 
EM9 CAF H23 SING N N 47 
EM9 CAE H24 SING N N 48 
EM9 CAE H25 SING N N 49 
EM9 CAL C1  SING N N 50 
EM9 C1  C2  SING N N 51 
EM9 C2  C3  SING N N 52 
EM9 C3  C4  SING N N 53 
EM9 C4  C5  SING N N 54 
EM9 C5  C6  SING N N 55 
EM9 C6  C7  SING N N 56 
EM9 C7  C8  SING N N 57 
EM9 C8  C10 SING N N 58 
EM9 C10 C11 SING N N 59 
EM9 C11 N1  SING N N 60 
EM9 C11 O1  DOUB N N 61 
EM9 N1  C13 SING N N 62 
EM9 C13 C14 SING N N 63 
EM9 C14 C15 SING N N 64 
EM9 C15 C16 SING N N 65 
EM9 N1  C17 SING N N 66 
EM9 C1  H3  SING N N 67 
EM9 C1  H26 SING N N 68 
EM9 C2  H27 SING N N 69 
EM9 C2  H28 SING N N 70 
EM9 C3  H29 SING N N 71 
EM9 C3  H30 SING N N 72 
EM9 C4  H31 SING N N 73 
EM9 C4  H32 SING N N 74 
EM9 C5  H33 SING N N 75 
EM9 C5  H34 SING N N 76 
EM9 C6  H35 SING N N 77 
EM9 C6  H36 SING N N 78 
EM9 C7  H37 SING N N 79 
EM9 C7  H38 SING N N 80 
EM9 C8  H39 SING N N 81 
EM9 C8  H40 SING N N 82 
EM9 C10 H41 SING N N 83 
EM9 C10 H42 SING N N 84 
EM9 C13 H43 SING N N 85 
EM9 C13 H44 SING N N 86 
EM9 C14 H45 SING N N 87 
EM9 C14 H46 SING N N 88 
EM9 C15 H47 SING N N 89 
EM9 C15 H48 SING N N 90 
EM9 C16 H49 SING N N 91 
EM9 C16 H50 SING N N 92 
EM9 C16 H51 SING N N 93 
EM9 C17 H52 SING N N 94 
EM9 C17 H53 SING N N 95 
EM9 C17 H54 SING N N 96 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
EM9 SMILES           ACDLabs              12.01 "C(CCCCCCCCCC(N(CCCC)C)=O)C1C3C(c2c(C1)cc(cc2)O)CCC4(C(O)C(Cl)CC34)C" 
EM9 InChI            InChI                1.03  
"InChI=1S/C34H54ClNO3/c1-4-5-20-36(3)31(38)15-13-11-9-7-6-8-10-12-14-24-21-25-22-26(37)16-17-27(25)28-18-19-34(2)29(32(24)28)23-30(35)33(34)39/h16-17,22,24,28-30,32-33,37,39H,4-15,18-21,23H2,1-3H3/t24-,28-,29+,30-,32-,33+,34+/m1/s1" 
EM9 InChIKey         InChI                1.03  FQJIZXBCOKNLMR-FTAPQOLWSA-N 
EM9 SMILES_CANONICAL CACTVS               3.385 "CCCCN(C)C(=O)CCCCCCCCCC[C@@H]1Cc2cc(O)ccc2[C@H]3CC[C@]4(C)[C@@H](O)[C@H](Cl)C[C@H]4[C@H]13" 
EM9 SMILES           CACTVS               3.385 "CCCCN(C)C(=O)CCCCCCCCCC[CH]1Cc2cc(O)ccc2[CH]3CC[C]4(C)[CH](O)[CH](Cl)C[CH]4[CH]13" 
EM9 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.6 "CCCCN(C)C(=O)CCCCCCCCCC[C@@H]1Cc2cc(ccc2[C@@H]3[C@@H]1[C@@H]4C[C@H]([C@@H]([C@]4(CC3)C)O)Cl)O" 
EM9 SMILES           "OpenEye OEToolkits" 2.0.6 "CCCCN(C)C(=O)CCCCCCCCCCC1Cc2cc(ccc2C3C1C4CC(C(C4(CC3)C)O)Cl)O" 
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
EM9 "SYSTEMATIC NAME" ACDLabs              12.01 "N-butyl-11-[(7alpha,9beta,13alpha,14beta,16alpha,17alpha)-16-chloro-3,17-dihydroxyestra-1,3,5(10)-trien-7-yl]-N-methylundecanamide"                                                                  
EM9 "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.6 "~{N}-butyl-11-[(7~{R},8~{R},9~{S},13~{S},14~{S},16~{R},17~{R})-16-chloranyl-13-methyl-3,17-bis(oxidanyl)-6,7,8,9,11,12,14,15,16,17-decahydrocyclopenta[a]phenanthren-7-yl]-~{N}-methyl-undecanamide" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
EM9 "Create component" 2018-06-21 RCSB 
EM9 "Initial release"  2018-09-12 RCSB 
# 
