data_D29
# 
_chem_comp.id                                    D29 
_chem_comp.name                                  "(Z)-{[(3E)-4-{(R)-[3,5-bis(trifluoromethyl)phenyl]sulfinyl}but-3-en-1-yl]imino}methanethiol" 
_chem_comp.type                                  NON-POLYMER 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C13 H11 F6 N O S2" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2018-04-25 
_chem_comp.pdbx_modified_date                    2024-09-27 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        375.353 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     D29 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        5ZPU 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
_chem_comp.pdbx_pcm                              Y 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
D29 F6  F1  F 0 1 N N N N N N -36.646 70.674 27.013 -3.384 -3.215 -0.629 F6  D29 1  
D29 C7  C1  C 0 1 N N N N N N -36.089 71.849 27.129 -3.810 -1.910 -0.900 C7  D29 2  
D29 F4  F2  F 0 1 N N N N N N -36.463 72.321 28.298 -3.860 -1.714 -2.284 F4  D29 3  
D29 F5  F3  F 0 1 N N N N N N -36.381 72.638 26.107 -5.083 -1.713 -0.355 F5  D29 4  
D29 C6  C2  C 0 1 Y N N N N N -34.623 71.744 27.107 -2.843 -0.929 -0.288 C6  D29 5  
D29 C1  C3  C 0 1 Y N N N N N -34.022 70.581 26.686 -3.061 0.430  -0.421 C1  D29 6  
D29 C5  C4  C 0 1 Y N N N N N -33.915 72.859 27.482 -1.742 -1.388 0.410  C5  D29 7  
D29 C4  C5  C 0 1 Y N N N N N -32.546 72.813 27.476 -0.856 -0.487 0.972  C4  D29 8  
D29 C3  C6  C 0 1 Y N N N N N -31.892 71.642 27.050 -1.071 0.871  0.835  C3  D29 9  
D29 C2  C7  C 0 1 Y N N N N N -32.648 70.519 26.684 -2.174 1.330  0.140  C2  D29 10 
D29 C8  C8  C 0 1 N N N N N N -32.015 69.246 26.216 -2.412 2.811  -0.005 C8  D29 11 
D29 F3  F4  F 0 1 N N N N N N -32.818 68.210 26.377 -3.188 3.266  1.067  F3  D29 12 
D29 F2  F5  F 0 1 N N N N N N -30.840 69.001 26.756 -1.184 3.482  -0.009 F2  D29 13 
D29 F1  F6  F 0 1 N N N N N N -31.821 69.431 24.943 -3.084 3.060  -1.206 F1  D29 14 
D29 S1  S1  S 0 1 N N R N N N -31.855 74.217 27.968 0.548  -1.072 1.862  S1  D29 15 
D29 O   O1  O 0 1 N N N N N N -32.118 74.954 26.712 0.959  0.072  2.598  O   D29 16 
D29 C9  C9  C 0 1 N N N N N N -30.273 73.953 27.941 1.783  -1.204 0.613  C9  D29 17 
D29 C10 C10 C 0 1 N N N N N N -29.479 74.876 27.406 2.986  -1.620 0.923  C10 D29 18 
D29 C11 C11 C 0 1 N N N N N N -27.987 74.692 27.347 4.043  -1.733 -0.146 C11 D29 19 
D29 C12 C12 C 0 1 N N N N N N -27.252 75.959 27.783 5.274  -0.924 0.267  C12 D29 20 
D29 N   N1  N 0 1 N N N N N N -27.987 76.678 28.825 6.301  -1.035 -0.772 N   D29 21 
D29 C13 C13 C 0 1 N N N N N N -28.245 76.225 29.979 6.660  0.014  -1.441 C13 D29 22 
D29 S2  S2  S 0 1 N N N N N N -27.795 74.677 30.504 5.912  1.573  -1.103 S2  D29 23 
D29 H1  H1  H 0 1 N N N N N N -34.614 69.737 26.365 -3.924 0.788  -0.963 H1  D29 24 
D29 H2  H2  H 0 1 N N N N N N -34.431 73.761 27.778 -1.574 -2.449 0.517  H2  D29 25 
D29 H3  H3  H 0 1 N N N N N N -30.813 71.608 27.005 -0.379 1.574  1.274  H3  D29 26 
D29 H5  H5  H 0 1 N N N N N N -29.860 73.043 28.350 1.548  -0.943 -0.408 H5  D29 27 
D29 H6  H6  H 0 1 N N N N N N -29.915 75.779 27.005 3.221  -1.882 1.944  H6  D29 28 
D29 H7  H7  H 0 1 N N N N N N -27.702 73.865 28.014 4.321  -2.780 -0.272 H7  D29 29 
D29 H8  H8  H 0 1 N N N N N N -27.697 74.447 26.315 3.651  -1.345 -1.086 H8  D29 30 
D29 H9  H9  H 0 1 N N N N N N -26.262 75.681 28.172 4.996  0.122  0.393  H9  D29 31 
D29 H10 H10 H 0 1 N N N N N N -27.131 76.619 26.911 5.665  -1.312 1.207  H10 D29 32 
D29 H11 H11 H 0 1 N N N N N N -28.782 76.861 30.668 7.417  -0.067 -2.207 H11 D29 33 
D29 H12 H12 H 0 1 N N N N N N -28.260 74.658 31.718 6.593  2.379  -2.039 H12 D29 34 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
D29 F1  C8  SING N N 1  
D29 F5  C7  SING N N 2  
D29 C8  F3  SING N N 3  
D29 C8  C2  SING N N 4  
D29 C8  F2  SING N N 5  
D29 C2  C1  DOUB Y N 6  
D29 C2  C3  SING Y N 7  
D29 C1  C6  SING Y N 8  
D29 O   S1  DOUB N N 9  
D29 F6  C7  SING N N 10 
D29 C3  C4  DOUB Y N 11 
D29 C6  C7  SING N N 12 
D29 C6  C5  DOUB Y N 13 
D29 C7  F4  SING N N 14 
D29 C11 C10 SING N N 15 
D29 C11 C12 SING N N 16 
D29 C10 C9  DOUB N E 17 
D29 C4  C5  SING Y N 18 
D29 C4  S1  SING N N 19 
D29 C12 N   SING N N 20 
D29 C9  S1  SING N N 21 
D29 N   C13 DOUB N N 22 
D29 C13 S2  SING N N 23 
D29 C1  H1  SING N N 24 
D29 C5  H2  SING N N 25 
D29 C3  H3  SING N N 26 
D29 C9  H5  SING N N 27 
D29 C10 H6  SING N N 28 
D29 C11 H7  SING N N 29 
D29 C11 H8  SING N N 30 
D29 C12 H9  SING N N 31 
D29 C12 H10 SING N N 32 
D29 C13 H11 SING N N 33 
D29 S2  H12 SING N N 34 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
D29 SMILES           ACDLabs              12.01 "FC(F)(F)c1cc(S(=O)[C@H]=[C@H]CC\N=C/S)cc(c1)C(F)(F)F"                                                                          
D29 InChI            InChI                1.03  "InChI=1S/C13H11F6NOS2/c14-12(15,16)9-5-10(13(17,18)19)7-11(6-9)23(21)4-2-1-3-20-8-22/h2,4-8H,1,3H2,(H,20,22)/b4-2+/t23-/m1/s1" 
D29 InChIKey         InChI                1.03  LCTALRIGMZILGK-KFVKGYIZSA-N                                                                                                     
D29 SMILES_CANONICAL CACTVS               3.385 "FC(F)(F)c1cc(cc(c1)C(F)(F)F)[S@](=O)/C=C/CCN=CS"                                                                               
D29 SMILES           CACTVS               3.385 "FC(F)(F)c1cc(cc(c1)C(F)(F)F)[S](=O)C=CCCN=CS"                                                                                  
D29 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.6 "c1c(cc(cc1C(F)(F)F)S(=O)/C=C/CC/N=C\S)C(F)(F)F"                                                                                
D29 SMILES           "OpenEye OEToolkits" 2.0.6 "c1c(cc(cc1C(F)(F)F)S(=O)C=CCCN=CS)C(F)(F)F"                                                                                    
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
D29 "SYSTEMATIC NAME" ACDLabs              12.01 "(Z)-{[(3E)-4-{(R)-[3,5-bis(trifluoromethyl)phenyl]sulfinyl}but-3-en-1-yl]imino}methanethiol"      
D29 "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.6 "(1~{Z})-~{N}-[(~{E})-4-[3,5-bis(trifluoromethyl)phenyl]sulfinylbut-3-enyl]methanimidothioic acid" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
D29 "Create component" 2018-04-25 PDBJ 
D29 "Initial release"  2019-04-17 RCSB 
D29 "Modify PCM"       2024-09-27 PDBE 
# 
_pdbx_chem_comp_pcm.pcm_id                             1 
_pdbx_chem_comp_pcm.comp_id                            D29 
_pdbx_chem_comp_pcm.modified_residue_id                CYS 
_pdbx_chem_comp_pcm.type                               None 
_pdbx_chem_comp_pcm.category                           "Covalent chemical modification" 
_pdbx_chem_comp_pcm.position                           "Amino-acid side chain" 
_pdbx_chem_comp_pcm.polypeptide_position               "Any position" 
_pdbx_chem_comp_pcm.comp_id_linking_atom               C13 
_pdbx_chem_comp_pcm.modified_residue_id_linking_atom   SG 
_pdbx_chem_comp_pcm.uniprot_specific_ptm_accession     ? 
_pdbx_chem_comp_pcm.uniprot_generic_ptm_accession      ? 
# 
