data_CL9
# 
_chem_comp.id                                    CL9 
_chem_comp.name                                  "2-chloro-2'-deoxyadenosine" 
_chem_comp.type                                  NON-POLYMER 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C10 H12 Cl N5 O3" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2008-02-18 
_chem_comp.pdbx_modified_date                    2011-06-04 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        285.687 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     CL9 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        2ZI9 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  PDBJ 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
CL9 C2     C2   C  0 1 Y N N 51.624 67.584 101.436 -3.138 -0.818 0.242  C2     CL9 1  
CL9 C4     C4   C  0 1 Y N N 51.201 65.643 100.381 -1.101 0.238  0.092  C4     CL9 2  
CL9 C5     C5   C  0 1 Y N N 49.876 65.729 100.776 -1.759 1.437  -0.227 C5     CL9 3  
CL9 C6     C6   C  0 1 Y N N 49.441 66.791 101.516 -3.162 1.426  -0.301 C6     CL9 4  
CL9 C8     C8   C  0 1 Y N N 50.162 63.940 99.638  0.369  1.853  -0.211 C8     CL9 5  
CL9 CL     CL   CL 0 0 N N N 52.794 68.844 101.833 -4.034 -2.274 0.545  CL     CL9 6  
CL9 N3     N3   N  0 1 Y N N 52.079 66.577 100.710 -1.824 -0.855 0.316  N3     CL9 7  
CL9 N9     N9   N  0 1 Y N N 51.355 64.535 99.705  0.239  0.530  0.095  N9     CL9 8  
CL9 N7     N7   N  0 1 Y N N 49.242 64.667 100.310 -0.804 2.382  -0.405 N7     CL9 9  
CL9 N6     N6   N  0 1 N N N 48.158 66.881 101.909 -3.865 2.577  -0.611 N6     CL9 10 
CL9 N1     N1   N  0 1 Y N N 50.341 67.726 101.841 -3.800 0.285  -0.060 N1     CL9 11 
CL9 "C1'"  C1*  C  0 1 N N R 52.587 64.084 99.058  1.330  -0.406 0.376  "C1'"  CL9 12 
CL9 "C2'"  C2*  C  0 1 N N N 53.552 63.380 99.959  1.712  -1.166 -0.909 "C2'"  CL9 13 
CL9 "C3'"  C3*  C  0 1 N N S 54.223 62.449 98.979  3.211  -0.836 -1.114 "C3'"  CL9 14 
CL9 "O3'"  O3*  O  0 1 N N N 55.295 63.191 98.392  3.935  -1.993 -1.537 "O3'"  CL9 15 
CL9 "C4'"  C4*  C  0 1 N N R 53.206 62.191 97.888  3.645  -0.401 0.309  "C4'"  CL9 16 
CL9 "O4'"  O4*  O  0 1 N N N 52.177 63.114 98.111  2.495  0.317  0.808  "O4'"  CL9 17 
CL9 "C5'"  C5*  C  0 1 N N N 52.506 60.867 97.958  4.866  0.518  0.243  "C5'"  CL9 18 
CL9 "O5'"  O5*  O  0 1 N N N 51.292 61.197 98.602  5.316  0.809  1.567  "O5'"  CL9 19 
CL9 H8     H8   H  0 1 N N N 49.961 63.013 99.122  1.308  2.382  -0.285 H8     CL9 20 
CL9 HN6    HN6  H  0 1 N N N 48.116 66.903 102.908 -3.388 3.405  -0.780 HN6    CL9 21 
CL9 HN6A   HN6A H  0 0 N N N 47.754 67.718 101.540 -4.833 2.557  -0.658 HN6A   CL9 22 
CL9 "H1'"  H1*  H  0 1 N N N 53.098 64.974 98.663  1.023  -1.113 1.147  "H1'"  CL9 23 
CL9 "H2'"  H2*  H  0 1 N N N 54.262 64.071 100.437 1.573  -2.239 -0.774 "H2'"  CL9 24 
CL9 "H2'A" H2*A H  0 0 N N N 53.084 62.874 100.817 1.124  -0.808 -1.754 "H2'A" CL9 25 
CL9 "H3'"  H3*  H  0 1 N N N 54.577 61.517 99.444  3.336  -0.019 -1.826 "H3'"  CL9 26 
CL9 "HO3'" HO3* H  0 0 N N N 55.103 63.356 97.476  3.637  -2.356 -2.382 "HO3'" CL9 27 
CL9 "H4'"  H4*  H  0 1 N N N 53.751 62.246 96.934  3.852  -1.273 0.930  "H4'"  CL9 28 
CL9 "H5'"  H5*  H  0 1 N N N 52.337 60.440 96.959  5.664  0.023  -0.311 "H5'"  CL9 29 
CL9 "H5'A" H5*A H  0 0 N N N 53.085 60.096 98.487  4.596  1.446  -0.262 "H5'A" CL9 30 
CL9 "HO5'" HO5* H  0 0 N N N 51.439 61.271 99.538  6.089  1.389  1.602  "HO5'" CL9 31 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
CL9 C2    CL     SING N N 1  
CL9 C2    N3     DOUB Y N 2  
CL9 C2    N1     SING Y N 3  
CL9 C4    C5     DOUB Y N 4  
CL9 C4    N3     SING Y N 5  
CL9 C4    N9     SING Y N 6  
CL9 C5    C6     SING Y N 7  
CL9 C5    N7     SING Y N 8  
CL9 C6    N6     SING N N 9  
CL9 C6    N1     DOUB Y N 10 
CL9 C8    N9     SING Y N 11 
CL9 C8    N7     DOUB Y N 12 
CL9 N9    "C1'"  SING N N 13 
CL9 "C1'" "C2'"  SING N N 14 
CL9 "C1'" "O4'"  SING N N 15 
CL9 "C2'" "C3'"  SING N N 16 
CL9 "C3'" "O3'"  SING N N 17 
CL9 "C3'" "C4'"  SING N N 18 
CL9 "C4'" "O4'"  SING N N 19 
CL9 "C4'" "C5'"  SING N N 20 
CL9 "C5'" "O5'"  SING N N 21 
CL9 C8    H8     SING N N 22 
CL9 N6    HN6    SING N N 23 
CL9 N6    HN6A   SING N N 24 
CL9 "C1'" "H1'"  SING N N 25 
CL9 "C2'" "H2'"  SING N N 26 
CL9 "C2'" "H2'A" SING N N 27 
CL9 "C3'" "H3'"  SING N N 28 
CL9 "O3'" "HO3'" SING N N 29 
CL9 "C4'" "H4'"  SING N N 30 
CL9 "C5'" "H5'"  SING N N 31 
CL9 "C5'" "H5'A" SING N N 32 
CL9 "O5'" "HO5'" SING N N 33 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
CL9 SMILES           ACDLabs              10.04 "Clc1nc(c2ncn(c2n1)C3OC(C(O)C3)CO)N"                                                                                            
CL9 SMILES_CANONICAL CACTVS               3.341 "Nc1nc(Cl)nc2n(cnc12)[C@H]3C[C@H](O)[C@@H](CO)O3"                                                                               
CL9 SMILES           CACTVS               3.341 "Nc1nc(Cl)nc2n(cnc12)[CH]3C[CH](O)[CH](CO)O3"                                                                                   
CL9 SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 "c1nc2c(nc(nc2n1[C@H]3C[C@@H]([C@H](O3)CO)O)Cl)N"                                                                               
CL9 SMILES           "OpenEye OEToolkits" 1.5.0 "c1nc2c(nc(nc2n1C3CC(C(O3)CO)O)Cl)N"                                                                                            
CL9 InChI            InChI                1.03  "InChI=1S/C10H12ClN5O3/c11-10-14-8(12)7-9(15-10)16(3-13-7)6-1-4(18)5(2-17)19-6/h3-6,17-18H,1-2H2,(H2,12,14,15)/t4-,5+,6+/m0/s1" 
CL9 InChIKey         InChI                1.03  PTOAARAWEBMLNO-KVQBGUIXSA-N                                                                                                     
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
CL9 "SYSTEMATIC NAME" ACDLabs              10.04 "2-chloro-2'-deoxyadenosine"                                              
CL9 "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 "(2R,3S,5R)-5-(6-amino-2-chloro-purin-9-yl)-2-(hydroxymethyl)oxolan-3-ol" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
CL9 "Create component"  2008-02-18 PDBJ 
CL9 "Modify descriptor" 2011-06-04 RCSB 
# 
