data_B79
#

_chem_comp.id                                   B79
_chem_comp.name                                 "(8R,9S,10S)-10-[(dimethylamino)methyl]-N-(4-methoxyphenyl)-9-[4-(2-phenylethynyl)phenyl]-1,6-diazabicyclo[6.2.0]decane-6-carboxamide"
_chem_comp.type                                 non-polymer
_chem_comp.pdbx_type                            HETAIN
_chem_comp.formula                              "C33 H38 N4 O2"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        ?
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2020-12-22
_chem_comp.pdbx_modified_date                   2022-03-18
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       522.680
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    B79
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       7DPI
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 PDBJ
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
B79  N    N1   N  0  1  N  N  N   -8.097   -4.369  -22.849   0.321  -2.218   0.888  N    B79   1  
B79  C    C1   C  0  1  N  N  N  -14.462   -4.689  -22.652  -4.902  -4.579  -1.747  C    B79   2  
B79  O    O1   O  0  1  N  N  N  -13.472   -5.485  -22.015  -4.779  -3.490  -0.831  O    B79   3  
B79  C1   C2   C  0  1  Y  N  N  -12.161   -5.200  -22.275  -3.524  -3.177  -0.408  C1   B79   4  
B79  C10  C3   C  0  1  N  N  S   -1.667   -6.014  -24.114   4.363  -0.005  -0.719  C10  B79   5  
B79  C11  C4   C  0  1  N  N  N   -0.630   -5.650  -25.185   4.116   1.364  -1.356  C11  B79   6  
B79  C12  C5   C  0  1  N  N  N   -0.810   -3.287  -25.770   4.234   2.567  -3.453  C12  B79   7  
B79  C13  C6   C  0  1  N  N  N   -0.652   -4.928  -27.478   6.153   1.319  -2.664  C13  B79   8  
B79  C14  C7   C  0  1  N  N  S   -2.751   -7.120  -24.310   3.159  -0.980  -0.818  C14  B79   9  
B79  C15  C8   C  0  1  N  N  R   -3.748   -6.103  -23.662   3.752  -1.489   0.479  C15  B79  10  
B79  C16  C9   C  0  1  N  N  N   -5.073   -5.699  -24.303   2.802  -1.748   1.688  C16  B79  11  
B79  C17  C10  C  0  1  Y  N  N   -3.015   -7.834  -25.617   1.809  -0.325  -0.674  C17  B79  12  
B79  C18  C11  C  0  1  Y  N  N   -1.971   -8.389  -26.343   1.728   1.022  -0.369  C18  B79  13  
B79  C19  C12  C  0  1  Y  N  N   -2.195   -8.963  -27.580   0.496   1.629  -0.235  C19  B79  14  
B79  C2   C13  C  0  1  Y  N  N  -11.638   -3.990  -21.866  -3.321  -2.064   0.394  C2   B79  15  
B79  C20  C14  C  0  1  Y  N  N   -3.464   -9.003  -28.121  -0.670   0.879  -0.408  C20  B79  16  
B79  C21  C15  C  0  1  Y  N  N   -4.533   -8.500  -27.371  -0.580  -0.481  -0.716  C21  B79  17  
B79  C22  C16  C  0  1  Y  N  N   -4.290   -7.918  -26.138   0.659  -1.072  -0.852  C22  B79  18  
B79  C23  C17  C  0  1  N  N  N   -3.692   -9.494  -29.453  -1.953   1.502  -0.270  C23  B79  19  
B79  C24  C18  C  0  1  N  N  N   -3.805   -9.972  -30.543  -3.004   2.013  -0.157  C24  B79  20  
B79  C25  C19  C  0  1  Y  N  N   -3.950  -10.455  -31.883  -4.286   2.635  -0.019  C25  B79  21  
B79  C26  C20  C  0  1  Y  N  N   -4.556  -11.678  -32.126  -5.453   1.886  -0.192  C26  B79  22  
B79  C27  C21  C  0  1  Y  N  N   -4.775  -12.097  -33.419  -6.684   2.492  -0.058  C27  B79  23  
B79  C28  C22  C  0  1  Y  N  N   -4.397  -11.321  -34.477  -6.766   3.839   0.248  C28  B79  24  
B79  C29  C23  C  0  1  Y  N  N   -3.845  -10.076  -34.254  -5.615   4.588   0.421  C29  B79  25  
B79  C3   C24  C  0  1  Y  N  N  -10.301   -3.710  -22.077  -2.047  -1.746   0.823  C3   B79  26  
B79  C30  C25  C  0  1  Y  N  N   -3.638   -9.629  -32.960  -4.377   3.994   0.295  C30  B79  27  
B79  C31  C26  C  0  1  Y  N  N  -10.020   -5.847  -23.121  -1.177  -3.658  -0.345  C31  B79  28  
B79  C32  C27  C  0  1  Y  N  N  -11.357   -6.127  -22.909  -2.451  -3.975  -0.774  C32  B79  29  
B79  C4   C28  C  0  1  Y  N  N   -9.479   -4.639  -22.699  -0.971  -2.541   0.453  C4   B79  30  
B79  C5   C29  C  0  1  N  N  N   -7.286   -4.928  -23.785   0.606  -0.961   1.280  C5   B79  31  
B79  C6   C30  C  0  1  N  N  N   -5.416   -4.038  -22.458   2.078   0.774   1.955  C6   B79  32  
B79  C7   C31  C  0  1  N  N  N   -4.800   -2.724  -22.921   3.059   1.003   3.112  C7   B79  33  
B79  C8   C32  C  0  1  N  N  N   -3.292   -2.725  -23.145   4.481   1.339   2.577  C8   B79  34  
B79  C9   C33  C  0  1  N  N  N   -2.576   -4.037  -22.864   5.022   0.150   1.746  C9   B79  35  
B79  N1   N2   N  0  1  N  N  N   -5.954   -4.877  -23.533   1.862  -0.638   1.650  N1   B79  36  
B79  N2   N3   N  0  1  N  N  N   -2.766   -5.020  -23.950   4.097  -0.052   0.690  N2   B79  37  
B79  N3   N4   N  0  1  N  N  N   -1.152   -4.656  -26.142   4.686   1.384  -2.710  N3   B79  38  
B79  O1   O2   O  0  1  N  N  N   -7.710   -5.472  -24.791  -0.269  -0.117   1.300  O1   B79  39  
B79  H1   H1   H  0  1  N  N  N   -7.685   -3.714  -22.215   1.010  -2.901   0.911  H1   B79  40  
B79  H2   H2   H  0  1  N  N  N  -15.462   -5.034  -22.349  -5.939  -4.667  -2.070  H2   B79  41  
B79  H3   H3   H  0  1  N  N  N  -14.332   -3.637  -22.357  -4.265  -4.399  -2.614  H3   B79  42  
B79  H4   H4   H  0  1  N  N  N  -14.359   -4.779  -23.743  -4.594  -5.503  -1.257  H4   B79  43  
B79  H5   H5   H  0  1  N  N  N   -1.158   -6.175  -23.152   5.317  -0.447  -1.006  H5   B79  44  
B79  H6   H6   H  0  1  N  N  N   -0.352   -6.561  -25.735   3.044   1.551  -1.410  H6   B79  45  
B79  H7   H7   H  0  1  N  N  N    0.260   -5.234  -24.691   4.590   2.137  -0.751  H7   B79  46  
B79  H8   H8   H  0  1  N  N  N   -1.187   -3.076  -24.758   4.671   2.557  -4.452  H8   B79  47  
B79  H9   H9   H  0  1  N  N  N    0.283   -3.165  -25.787   3.147   2.554  -3.532  H9   B79  48  
B79  H10  H10  H  0  1  N  N  N   -1.268   -2.588  -26.485   4.550   3.469  -2.928  H10  B79  49  
B79  H11  H11  H  0  1  N  N  N   -0.908   -5.959  -27.763   6.536   2.159  -2.086  H11  B79  50  
B79  H12  H12  H  0  1  N  N  N   -1.110   -4.227  -28.191   6.461   0.384  -2.195  H12  B79  51  
B79  H13  H13  H  0  1  N  N  N    0.441   -4.804  -27.493   6.550   1.365  -3.678  H13  B79  52  
B79  H14  H14  H  0  1  N  N  N   -2.553   -7.892  -23.552   3.214  -1.685  -1.648  H14  B79  53  
B79  H15  H15  H  0  1  N  N  N   -3.858   -6.289  -22.583   4.578  -2.195   0.382  H15  B79  54  
B79  H16  H16  H  0  1  N  N  N   -4.839   -5.154  -25.229   2.279  -2.696   1.565  H16  B79  55  
B79  H17  H17  H  0  1  N  N  N   -5.616   -6.624  -24.549   3.364  -1.740   2.623  H17  B79  56  
B79  H18  H18  H  0  1  N  N  N   -0.971   -8.372  -25.936   2.630   1.600  -0.235  H18  B79  57  
B79  H19  H19  H  0  1  N  N  N   -1.367   -9.385  -28.130   0.434   2.680   0.004  H19  B79  58  
B79  H20  H20  H  0  1  N  N  N  -12.273   -3.263  -21.382  -4.158  -1.446   0.682  H20  B79  59  
B79  H21  H21  H  0  1  N  N  N   -5.542   -8.565  -27.751  -1.477  -1.066  -0.851  H21  B79  60  
B79  H22  H22  H  0  1  N  N  N   -5.118   -7.520  -25.571   0.730  -2.123  -1.090  H22  B79  61  
B79  H23  H23  H  0  1  N  N  N   -4.857  -12.304  -31.299  -5.390   0.835  -0.431  H23  B79  62  
B79  H24  H24  H  0  1  N  N  N   -5.251  -13.050  -33.598  -7.587   1.915  -0.192  H24  B79  63  
B79  H25  H25  H  0  1  N  N  N   -4.530  -11.681  -35.487  -7.733   4.310   0.347  H25  B79  64  
B79  H26  H26  H  0  1  N  N  N   -3.574   -9.449  -35.091  -5.686   5.639   0.659  H26  B79  65  
B79  H27  H27  H  0  1  N  N  N   -9.894   -2.763  -21.756  -1.889  -0.879   1.447  H27  B79  66  
B79  H28  H28  H  0  1  N  N  N   -3.235   -8.642  -32.786  -3.479   4.579   0.431  H28  B79  67  
B79  H29  H29  H  0  1  N  N  N   -9.392   -6.572  -23.618  -0.341  -4.280  -0.630  H29  B79  68  
B79  H30  H30  H  0  1  N  N  N  -11.772   -7.068  -23.238  -2.611  -4.845  -1.395  H30  B79  69  
B79  H31  H31  H  0  1  N  N  N   -6.236   -3.805  -21.763   1.121   1.227   2.213  H31  B79  70  
B79  H32  H32  H  0  1  N  N  N   -4.640   -4.613  -21.931   2.469   1.268   1.065  H32  B79  71  
B79  H33  H33  H  0  1  N  N  N   -5.025   -1.962  -22.160   2.702   1.831   3.725  H33  B79  72  
B79  H34  H34  H  0  1  N  N  N   -3.108   -2.460  -24.197   4.434   2.224   1.944  H34  B79  73  
B79  H35  H35  H  0  1  N  N  N   -2.969   -4.462  -21.929   6.010   0.391   1.354  H35  B79  74  
B79  H36  H36  H  0  1  N  N  N   -1.500   -3.837  -22.752   5.079  -0.743   2.370  H36  B79  75  
B79  H39  H39  H  0  1  N  N  N   -5.279   -2.446  -23.871   3.110   0.102   3.722  H39  B79  76  
B79  H40  H40  H  0  1  N  N  N   -2.854   -1.956  -22.491   5.153   1.521   3.415  H40  B79  77  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
B79  C28  C29  DOUB  Y  N   1  
B79  C28  C27  SING  Y  N   2  
B79  C29  C30  SING  Y  N   3  
B79  C27  C26  DOUB  Y  N   4  
B79  C30  C25  DOUB  Y  N   5  
B79  C26  C25  SING  Y  N   6  
B79  C25  C24  SING  N  N   7  
B79  C24  C23  TRIP  N  N   8  
B79  C23  C20  SING  N  N   9  
B79  C20  C19  DOUB  Y  N  10  
B79  C20  C21  SING  Y  N  11  
B79  C19  C18  SING  Y  N  12  
B79  C13  N3   SING  N  N  13  
B79  C21  C22  DOUB  Y  N  14  
B79  C18  C17  DOUB  Y  N  15  
B79  N3   C12  SING  N  N  16  
B79  N3   C11  SING  N  N  17  
B79  C22  C17  SING  Y  N  18  
B79  C17  C14  SING  N  N  19  
B79  C11  C10  SING  N  N  20  
B79  O1   C5   DOUB  N  N  21  
B79  C14  C10  SING  N  N  22  
B79  C14  C15  SING  N  N  23  
B79  C16  C15  SING  N  N  24  
B79  C16  N1   SING  N  N  25  
B79  C10  N2   SING  N  N  26  
B79  N2   C15  SING  N  N  27  
B79  N2   C9   SING  N  N  28  
B79  C5   N1   SING  N  N  29  
B79  C5   N    SING  N  N  30  
B79  N1   C6   SING  N  N  31  
B79  C8   C7   SING  N  N  32  
B79  C8   C9   SING  N  N  33  
B79  C31  C32  DOUB  Y  N  34  
B79  C31  C4   SING  Y  N  35  
B79  C7   C6   SING  N  N  36  
B79  C32  C1   SING  Y  N  37  
B79  N    C4   SING  N  N  38  
B79  C4   C3   DOUB  Y  N  39  
B79  C    O    SING  N  N  40  
B79  C1   O    SING  N  N  41  
B79  C1   C2   DOUB  Y  N  42  
B79  C3   C2   SING  Y  N  43  
B79  N    H1   SING  N  N  44  
B79  C    H2   SING  N  N  45  
B79  C    H3   SING  N  N  46  
B79  C    H4   SING  N  N  47  
B79  C10  H5   SING  N  N  48  
B79  C11  H6   SING  N  N  49  
B79  C11  H7   SING  N  N  50  
B79  C12  H8   SING  N  N  51  
B79  C12  H9   SING  N  N  52  
B79  C12  H10  SING  N  N  53  
B79  C13  H11  SING  N  N  54  
B79  C13  H12  SING  N  N  55  
B79  C13  H13  SING  N  N  56  
B79  C14  H14  SING  N  N  57  
B79  C15  H15  SING  N  N  58  
B79  C16  H16  SING  N  N  59  
B79  C16  H17  SING  N  N  60  
B79  C18  H18  SING  N  N  61  
B79  C19  H19  SING  N  N  62  
B79  C2   H20  SING  N  N  63  
B79  C21  H21  SING  N  N  64  
B79  C22  H22  SING  N  N  65  
B79  C26  H23  SING  N  N  66  
B79  C27  H24  SING  N  N  67  
B79  C28  H25  SING  N  N  68  
B79  C29  H26  SING  N  N  69  
B79  C3   H27  SING  N  N  70  
B79  C30  H28  SING  N  N  71  
B79  C31  H29  SING  N  N  72  
B79  C32  H30  SING  N  N  73  
B79  C6   H31  SING  N  N  74  
B79  C6   H32  SING  N  N  75  
B79  C7   H33  SING  N  N  76  
B79  C8   H34  SING  N  N  77  
B79  C9   H35  SING  N  N  78  
B79  C9   H36  SING  N  N  79  
B79  C7   H39  SING  N  N  80  
B79  C8   H40  SING  N  N  81  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
B79  InChI             InChI                 1.03   "InChI=1S/C33H38N4O2/c1-35(2)23-30-32(27-15-13-26(14-16-27)12-11-25-9-5-4-6-10-25)31-24-36(21-7-8-22-37(30)31)33(38)34-28-17-19-29(39-3)20-18-28/h4-6,9-10,13-20,30-32H,7-8,21-24H2,1-3H3,(H,34,38)/t30-,31+,32+/m1/s1"  
B79  InChIKey          InChI                 1.03   VKRCTZCBMKVHCK-RTOKGZNSSA-N  
B79  SMILES_CANONICAL  CACTVS                3.385  "COc1ccc(NC(=O)N2CCCCN3[C@H](CN(C)C)[C@@H]([C@@H]3C2)c4ccc(cc4)C#Cc5ccccc5)cc1"  
B79  SMILES            CACTVS                3.385  "COc1ccc(NC(=O)N2CCCCN3[CH](CN(C)C)[CH]([CH]3C2)c4ccc(cc4)C#Cc5ccccc5)cc1"  
B79  SMILES_CANONICAL  "OpenEye OEToolkits"  2.0.7  "CN(C)C[C@@H]1[C@@H]([C@H]2N1CCCCN(C2)C(=O)Nc3ccc(cc3)OC)c4ccc(cc4)C#Cc5ccccc5"  
B79  SMILES            "OpenEye OEToolkits"  2.0.7  "CN(C)CC1C(C2N1CCCCN(C2)C(=O)Nc3ccc(cc3)OC)c4ccc(cc4)C#Cc5ccccc5"  
#
_pdbx_chem_comp_identifier.comp_id          B79
_pdbx_chem_comp_identifier.type             "SYSTEMATIC NAME"
_pdbx_chem_comp_identifier.program          "OpenEye OEToolkits"
_pdbx_chem_comp_identifier.program_version  2.0.7
_pdbx_chem_comp_identifier.identifier       "(8~{R},9~{S},10~{S})-10-[(dimethylamino)methyl]-~{N}-(4-methoxyphenyl)-9-[4-(2-phenylethynyl)phenyl]-1,6-diazabicyclo[6.2.0]decane-6-carboxamide"
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
B79  "Create component"  2020-12-22  PDBJ  
B79  "Initial release"   2022-03-23  RCSB  
##
