data_779
#

_chem_comp.id                                   779
_chem_comp.name                                 "1-[(1R,3S)-3-{[(2E,4R)-4-(2-cyclohexylethyl)-2-imino-1-methyl-5-oxoimidazolidin-4-yl]methyl}cyclohexyl]-3-phenylurea"
_chem_comp.type                                 NON-POLYMER
_chem_comp.pdbx_type                            HETAIN
_chem_comp.formula                              "C26 H39 N5 O2"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        ?
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2014-09-08
_chem_comp.pdbx_modified_date                   2020-05-27
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       453.620
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    779
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       4R93
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 RCSB
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
779  C1   C1   C  0  1  N  N  N  21.296  11.919  23.109  -2.315  -0.365   1.006  C1   779   1  
779  C2   C2   C  0  1  N  N  R  20.888  10.799  22.168  -2.509  -0.148  -0.479  C2   779   2  
779  N3   N3   N  0  1  N  N  N  21.434   9.626  22.843  -2.653  -1.505  -1.031  N3   779   3  
779  C4   C4   C  0  1  N  N  N  22.073   9.981  24.006  -2.550  -2.372   0.028  C4   779   4  
779  N5   N5   N  0  1  N  N  N  21.982  11.341  24.149  -2.353  -1.695   1.207  N5   779   5  
779  O6   O6   O  0  1  N  N  N  21.013  13.101  22.965  -2.151   0.492   1.848  O6   779   6  
779  C7   C7   C  0  1  N  N  N  19.365  10.681  22.097  -3.774   0.672  -0.739  C7   779   7  
779  C8   C8   C  0  1  N  N  S  22.963  11.073  20.614  -0.017  -0.195  -0.660  C8   779   8  
779  C9   C9   C  0  1  N  N  N  18.653  10.596  23.456  -4.973  -0.020  -0.088  C9   779   9  
779  C10  C10  C  0  1  N  N  N  17.180  10.189  23.382  -6.239   0.800  -0.347  C10  779  10  
779  C11  C11  C  0  1  N  N  N  23.371  11.970  19.445   1.210   0.629  -1.054  C11  779  11  
779  C12  C12  C  0  1  N  N  R  24.893  12.028  19.276   2.480  -0.113  -0.631  C12  779  12  
779  C13  C13  C  0  1  N  N  N  25.527  10.638  19.201   2.532  -1.473  -1.330  C13  779  13  
779  C14  C14  C  0  1  N  N  N  25.082   9.756  20.364   1.304  -2.297  -0.936  C14  779  14  
779  C15  C15  C  0  1  N  N  N  23.558   9.670  20.459   0.035  -1.555  -1.359  C15  779  15  
779  C16  C16  C  0  1  N  N  N  16.670   9.942  24.795  -7.455   0.046   0.195  C16  779  16  
779  C17  C17  C  0  1  N  N  N  15.210   9.487  24.832  -8.720   0.867  -0.065  C17  779  17  
779  C18  C18  C  0  1  N  N  N  14.314  10.465  24.096  -8.604   2.220   0.639  C18  779  18  
779  C19  C19  C  0  1  N  N  N  14.835  10.786  22.699  -7.387   2.974   0.097  C19  779  19  
779  C20  C20  C  0  1  N  N  N  16.298  11.226  22.691  -6.122   2.154   0.356  C20  779  20  
779  N21  N21  N  0  1  N  N  N  22.679   9.198  24.838  -2.629  -3.667  -0.072  N21  779  21  
779  N22  N22  N  0  1  N  N  N  25.292  12.811  18.122   3.655   0.675  -1.009  N22  779  22  
779  C23  C23  C  0  1  N  N  N  25.830  14.077  18.297   4.814   0.520  -0.338  C23  779  23  
779  C24  C24  C  0  1  N  N  N  21.444  11.000  20.751  -1.287   0.547  -1.083  C24  779  24  
779  C25  C25  C  0  1  N  N  N  22.563  12.116  25.236  -2.204  -2.339   2.515  C25  779  25  
779  O26  O26  O  0  1  N  N  N  25.847  14.652  19.381   4.884  -0.274   0.579  O26  779  26  
779  N27  N27  N  0  1  N  N  N  26.302  14.598  17.117   5.896   1.246  -0.686  N27  779  27  
779  C28  C28  C  0  1  Y  N  N  26.772  15.916  16.894   7.127   1.006  -0.066  C28  779  28  
779  C29  C29  C  0  1  Y  N  N  27.208  16.223  15.619   8.016   2.053   0.144  C29  779  29  
779  C30  C30  C  0  1  Y  N  N  27.678  17.495  15.332   9.230   1.813   0.756  C30  779  30  
779  C31  C31  C  0  1  Y  N  N  27.696  18.467  16.316   9.562   0.533   1.160  C31  779  31  
779  C32  C32  C  0  1  Y  N  N  27.259  18.171  17.591   8.680  -0.512   0.951  C32  779  32  
779  C33  C33  C  0  1  Y  N  N  26.806  16.895  17.881   7.461  -0.277   0.345  C33  779  33  
779  H1   H1   H  0  1  N  N  N  18.979  11.563  21.565  -3.655   1.669  -0.313  H1   779  34  
779  H2   H2   H  0  1  N  N  N  19.120   9.773  21.527  -3.941   0.753  -1.813  H2   779  35  
779  H3   H3   H  0  1  N  N  N  23.367  11.513  21.537  -0.025  -0.342   0.420  H3   779  36  
779  H4   H4   H  0  1  N  N  N  19.182   9.856  24.074  -5.093  -1.017  -0.513  H4   779  37  
779  H5   H5   H  0  1  N  N  N  18.712  11.584  23.936  -4.807  -0.101   0.986  H5   779  38  
779  H6   H6   H  0  1  N  N  N  17.111   9.246  22.819  -6.357   0.956  -1.420  H6   779  39  
779  H7   H7   H  0  1  N  N  N  22.994  12.987  19.628   1.218   0.775  -2.134  H7   779  40  
779  H8   H8   H  0  1  N  N  N  22.925  11.575  18.520   1.173   1.598  -0.556  H8   779  41  
779  H9   H9   H  0  1  N  N  N  25.297  12.518  20.174   2.472  -0.260   0.449  H9   779  42  
779  H10  H10  H  0  1  N  N  N  25.229  10.160  18.256   2.540  -1.327  -2.410  H10  779  43  
779  H11  H11  H  0  1  N  N  N  26.622  10.743  19.230   3.436  -2.002  -1.029  H11  779  44  
779  H12  H12  H  0  1  N  N  N  25.488   8.744  20.219   1.342  -3.266  -1.434  H12  779  45  
779  H13  H13  H  0  1  N  N  N  25.474  10.178  21.301   1.297  -2.444   0.144  H13  779  46  
779  H14  H14  H  0  1  N  N  N  23.162   9.205  19.544  -0.840  -2.142  -1.078  H14  779  47  
779  H15  H15  H  0  1  N  N  N  23.281   9.059  21.331   0.043  -1.408  -2.439  H15  779  48  
779  H16  H16  H  0  1  N  N  N  17.292   9.163  25.261  -7.538  -0.918  -0.306  H16  779  49  
779  H17  H17  H  0  1  N  N  N  16.761  10.876  25.369  -7.337  -0.110   1.267  H17  779  50  
779  H18  H18  H  0  1  N  N  N  14.882   9.418  25.880  -8.838   1.023  -1.137  H18  779  51  
779  H19  H19  H  0  1  N  N  N  15.130   8.498  24.356  -9.587   0.330   0.322  H19  779  52  
779  H20  H20  H  0  1  N  N  N  14.257  11.398  24.676  -9.505   2.805   0.454  H20  779  53  
779  H21  H21  H  0  1  N  N  N  13.309  10.027  24.007  -8.486   2.064   1.711  H21  779  54  
779  H22  H22  H  0  1  N  N  N  14.224  11.596  22.275  -7.505   3.130  -0.976  H22  779  55  
779  H23  H23  H  0  1  N  N  N  14.737   9.887  22.074  -7.304   3.938   0.598  H23  779  56  
779  H24  H24  H  0  1  N  N  N  16.632  11.348  21.650  -6.004   1.997   1.428  H24  779  57  
779  H25  H25  H  0  1  N  N  N  16.389  12.186  23.220  -5.256   2.690  -0.030  H25  779  58  
779  H26  H26  H  0  1  N  N  N  23.077   9.702  25.604  -2.548  -4.221   0.721  H26  779  59  
779  H28  H28  H  0  1  N  N  N  25.179  12.438  17.201   3.599   1.309  -1.741  H28  779  60  
779  H29  H29  H  0  1  N  N  N  21.029  11.941  20.360  -1.366   0.542  -2.170  H29  779  61  
779  H30  H30  H  0  1  N  N  N  21.094  10.160  20.133  -1.242   1.576  -0.727  H30  779  62  
779  H31  H31  H  0  1  N  N  N  23.059  11.438  25.946  -3.184  -2.447   2.980  H31  779  63  
779  H32  H32  H  0  1  N  N  N  23.300  12.824  24.829  -1.752  -3.322   2.387  H32  779  64  
779  H33  H33  H  0  1  N  N  N  21.769  12.672  25.755  -1.566  -1.725   3.151  H33  779  65  
779  H34  H34  H  0  1  N  N  N  26.315  13.981  16.330   5.820   1.934  -1.365  H34  779  66  
779  H35  H35  H  0  1  N  N  N  27.182  15.470  14.845   7.757   3.053  -0.171  H35  779  67  
779  H36  H36  H  0  1  N  N  N  28.031  17.728  14.338   9.922   2.626   0.920  H36  779  68  
779  H37  H37  H  0  1  N  N  N  28.053  19.460  16.086  10.513   0.348   1.638  H37  779  69  
779  H38  H38  H  0  1  N  N  N  27.270  18.931  18.359   8.942  -1.510   1.267  H38  779  70  
779  H39  H39  H  0  1  N  N  N  26.476  16.658  18.882   6.771  -1.093   0.187  H39  779  71  
779  H40  H40  H  0  1  N  N  N  21.354   8.689  22.504  -2.794  -1.740  -1.962  H40  779  72  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
779  C30  C29  DOUB  Y  N   1  
779  C30  C31  SING  Y  N   2  
779  C29  C28  SING  Y  N   3  
779  C31  C32  DOUB  Y  N   4  
779  C28  N27  SING  N  N   5  
779  C28  C33  DOUB  Y  N   6  
779  N27  C23  SING  N  N   7  
779  C32  C33  SING  Y  N   8  
779  N22  C23  SING  N  N   9  
779  N22  C12  SING  N  N  10  
779  C23  O26  DOUB  N  N  11  
779  C13  C12  SING  N  N  12  
779  C13  C14  SING  N  N  13  
779  C12  C11  SING  N  N  14  
779  C11  C8   SING  N  N  15  
779  C14  C15  SING  N  N  16  
779  C15  C8   SING  N  N  17  
779  C8   C24  SING  N  N  18  
779  C24  C2   SING  N  N  19  
779  C7   C2   SING  N  N  20  
779  C7   C9   SING  N  N  21  
779  C2   N3   SING  N  N  22  
779  C2   C1   SING  N  N  23  
779  C20  C19  SING  N  N  24  
779  C20  C10  SING  N  N  25  
779  C19  C18  SING  N  N  26  
779  N3   C4   SING  N  N  27  
779  O6   C1   DOUB  N  N  28  
779  C1   N5   SING  N  N  29  
779  C10  C9   SING  N  N  30  
779  C10  C16  SING  N  N  31  
779  C4   N5   SING  N  N  32  
779  C4   N21  DOUB  N  N  33  
779  C18  C17  SING  N  N  34  
779  N5   C25  SING  N  N  35  
779  C16  C17  SING  N  N  36  
779  C7   H1   SING  N  N  37  
779  C7   H2   SING  N  N  38  
779  C8   H3   SING  N  N  39  
779  C9   H4   SING  N  N  40  
779  C9   H5   SING  N  N  41  
779  C10  H6   SING  N  N  42  
779  C11  H7   SING  N  N  43  
779  C11  H8   SING  N  N  44  
779  C12  H9   SING  N  N  45  
779  C13  H10  SING  N  N  46  
779  C13  H11  SING  N  N  47  
779  C14  H12  SING  N  N  48  
779  C14  H13  SING  N  N  49  
779  C15  H14  SING  N  N  50  
779  C15  H15  SING  N  N  51  
779  C16  H16  SING  N  N  52  
779  C16  H17  SING  N  N  53  
779  C17  H18  SING  N  N  54  
779  C17  H19  SING  N  N  55  
779  C18  H20  SING  N  N  56  
779  C18  H21  SING  N  N  57  
779  C19  H22  SING  N  N  58  
779  C19  H23  SING  N  N  59  
779  C20  H24  SING  N  N  60  
779  C20  H25  SING  N  N  61  
779  N21  H26  SING  N  N  62  
779  N22  H28  SING  N  N  63  
779  C24  H29  SING  N  N  64  
779  C24  H30  SING  N  N  65  
779  C25  H31  SING  N  N  66  
779  C25  H32  SING  N  N  67  
779  C25  H33  SING  N  N  68  
779  N27  H34  SING  N  N  69  
779  C29  H35  SING  N  N  70  
779  C30  H36  SING  N  N  71  
779  C31  H37  SING  N  N  72  
779  C32  H38  SING  N  N  73  
779  C33  H39  SING  N  N  74  
779  N3   H40  SING  N  N  75  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
779  SMILES            ACDLabs               12.01  "O=C1N(C(=[N@H])NC1(CC3CCCC(NC(=O)Nc2ccccc2)C3)CCC4CCCCC4)C"  
779  InChI             InChI                 1.03   "InChI=1S/C26H39N5O2/c1-31-23(32)26(30-24(31)27,16-15-19-9-4-2-5-10-19)18-20-11-8-14-22(17-20)29-25(33)28-21-12-6-3-7-13-21/h3,6-7,12-13,19-20,22H,2,4-5,8-11,14-18H2,1H3,(H2,27,30)(H2,28,29,33)/t20-,22+,26+/m0/s1"  
779  InChIKey          InChI                 1.03   CVMRAJSOLFSMNH-UNIVCBNLSA-N  
779  SMILES_CANONICAL  CACTVS                3.385  "CN1C(=N)N[C@](CCC2CCCCC2)(C[C@H]3CCC[C@H](C3)NC(=O)Nc4ccccc4)C1=O"  
779  SMILES            CACTVS                3.385  "CN1C(=N)N[C](CCC2CCCCC2)(C[CH]3CCC[CH](C3)NC(=O)Nc4ccccc4)C1=O"  
779  SMILES_CANONICAL  "OpenEye OEToolkits"  1.7.6  "[H]/N=C/1\N[C@](C(=O)N1C)(CCC2CCCCC2)C[C@H]3CCC[C@H](C3)NC(=O)Nc4ccccc4"  
779  SMILES            "OpenEye OEToolkits"  1.7.6  "CN1C(=O)C(NC1=N)(CCC2CCCCC2)CC3CCCC(C3)NC(=O)Nc4ccccc4"  
#   #
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
779  "SYSTEMATIC NAME"  ACDLabs               12.01  "1-[(1R,3S)-3-{[(2E,4R)-4-(2-cyclohexylethyl)-2-imino-1-methyl-5-oxoimidazolidin-4-yl]methyl}cyclohexyl]-3-phenylurea"  
779  "SYSTEMATIC NAME"  "OpenEye OEToolkits"  1.7.6  "1-[(1R,3S)-3-[[(4R)-2-azanylidene-4-(2-cyclohexylethyl)-1-methyl-5-oxidanylidene-imidazolidin-4-yl]methyl]cyclohexyl]-3-phenyl-urea"  
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
779  "Create component"    2014-09-08  RCSB  
779  "Initial release"     2014-11-05  RCSB  
779  "Other modification"  2020-05-27  RCSB  
##
