data_YR8
# 
_chem_comp.id                                    YR8 
_chem_comp.name                                  "3-[3-fluoranyl-4-(methylsulfonylmethyl)phenyl]-7-[(1~{S})-1-(piperidin-4-ylmethoxy)ethyl]-1~{H}-indole-2-carboxylic acid" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C25 H29 F N2 O5 S" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2023-06-20 
_chem_comp.pdbx_modified_date                    2024-07-05 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        488.572 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     YR8 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        8PG5 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  PDBE 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
YR8 C15  C1  C 0 1 N N N N N N -22.543 -9.376  9.901  -0.953 -3.468 -0.225 C15  YR8 1  
YR8 C18  C2  C 0 1 Y N N N N N -22.016 -11.906 10.028 -0.944 -0.952 0.069  C18  YR8 2  
YR8 C19  C3  C 0 1 Y N N N N N -21.413 -12.125 8.667  -2.394 -0.703 -0.089 C19  YR8 3  
YR8 C20  C4  C 0 1 Y N N N N N -21.729 -13.202 7.884  -3.298 -1.212 0.845  C20  YR8 4  
YR8 C21  C5  C 0 1 Y N N N N N -21.131 -13.310 6.634  -4.649 -0.977 0.694  C21  YR8 5  
YR8 C22  C6  C 0 1 Y N N N N N -20.191 -12.427 6.134  -5.110 -0.238 -0.381 C22  YR8 6  
YR8 C23  C7  C 0 1 N N N N N N -19.534 -12.616 4.759  -6.587 0.014  -0.539 C23  YR8 7  
YR8 C25  C8  C 0 1 N N N N N N -20.579 -10.033 3.779  -8.816 1.651  0.002  C25  YR8 8  
YR8 C12  C9  C 0 1 Y N N N N N -22.728 -12.211 12.166 1.317  -0.647 0.386  C12  YR8 9  
YR8 N13  N1  N 0 1 Y N N N N N -22.811 -10.887 11.836 1.051  -1.983 0.198  N13  YR8 10 
YR8 C01  C10 C 0 1 N N N N N N -22.343 -12.123 15.537 4.020  -1.189 2.119  C01  YR8 11 
YR8 C02  C11 C 0 1 N N S N N N -23.533 -12.026 14.582 3.811  -0.669 0.696  C02  YR8 12 
YR8 C04  C12 C 0 1 N N N N N N -25.778 -12.391 14.460 5.997  -0.414 -0.252 C04  YR8 13 
YR8 C05  C13 C 0 1 N N N N N N -27.026 -12.937 15.085 7.066  0.633  -0.573 C05  YR8 14 
YR8 C06  C14 C 0 1 N N N N N N -28.176 -13.032 14.148 7.603  1.232  0.729  C06  YR8 15 
YR8 C07  C15 C 0 1 N N N N N N -29.260 -14.096 14.444 8.714  2.234  0.405  C07  YR8 16 
YR8 C09  C16 C 0 1 N N N N N N -28.212 -14.784 16.439 9.311  1.010  -1.600 C09  YR8 17 
YR8 C10  C17 C 0 1 N N N N N N -26.989 -13.935 16.158 8.218  -0.028 -1.335 C10  YR8 18 
YR8 C11  C18 C 0 1 Y N N N N N -23.089 -12.867 13.366 2.494  0.060  0.616  C11  YR8 19 
YR8 C14  C19 C 0 1 Y N N N N N -22.412 -10.695 10.583 -0.302 -2.176 0.007  C14  YR8 20 
YR8 C28  C20 C 0 1 Y N N N N N -19.855 -11.358 6.944  -4.219 0.270  -1.312 C28  YR8 21 
YR8 C30  C21 C 0 1 Y N N N N N -20.442 -11.224 8.210  -2.863 0.046  -1.169 C30  YR8 22 
YR8 C31  C22 C 0 1 Y N N N N N -22.242 -12.870 11.029 0.098  0.052  0.315  C31  YR8 23 
YR8 C32  C23 C 0 1 Y N N N N N -21.999 -14.270 11.106 0.080  1.440  0.474  C32  YR8 24 
YR8 C33  C24 C 0 1 Y N N N N N -22.356 -14.934 12.285 1.247  2.113  0.698  C33  YR8 25 
YR8 C34  C25 C 0 1 Y N N N N N -22.911 -14.272 13.411 2.453  1.428  0.769  C34  YR8 26 
YR8 F29  F1  F 0 1 N N N N N N -18.953 -10.386 6.570  -4.676 0.991  -2.360 F29  YR8 27 
YR8 N08  N2  N 0 1 N N N N N N -29.511 -14.370 15.863 9.792  1.552  -0.323 N08  YR8 28 
YR8 O03  O1  O 0 1 N N N N N N -24.625 -12.615 15.218 4.872  0.225  0.354  O03  YR8 29 
YR8 O16  O2  O 0 1 N N N N N N -22.415 -8.322  10.580 -0.217 -4.597 -0.264 O16  YR8 30 
YR8 O17  O3  O 0 1 N N N N N N -23.056 -9.389  8.729  -2.159 -3.522 -0.376 O17  YR8 31 
YR8 O26  O4  O 0 1 N N N N N N -21.904 -12.303 3.517  -6.831 1.363  1.714  O26  YR8 32 
YR8 O27  O5  O 0 1 N N N N N N -19.907 -11.928 2.167  -6.394 2.636  -0.335 O27  YR8 33 
YR8 S24  S1  S 0 1 N N N N N N -20.523 -11.796 3.460  -7.033 1.549  0.319  S24  YR8 34 
YR8 H201 H1  H 0 0 N N N N N N -22.427 -13.951 8.229  -2.940 -1.789 1.685  H201 YR8 35 
YR8 H211 H2  H 0 0 N N N N N N -21.421 -14.142 6.009  -5.348 -1.371 1.416  H211 YR8 36 
YR8 H232 H3  H 0 0 N N N N N N -19.463 -13.691 4.536  -6.828 0.107  -1.598 H232 YR8 37 
YR8 H231 H4  H 0 0 N N N N N N -18.525 -12.178 4.777  -7.146 -0.817 -0.110 H231 YR8 38 
YR8 H251 H5  H 0 0 N N N N N N -21.042 -9.852  4.760  -8.992 1.696  -1.073 H251 YR8 39 
YR8 H253 H6  H 0 0 N N N N N N -19.557 -9.627  3.776  -9.310 0.771  0.415  H253 YR8 40 
YR8 H252 H7  H 0 0 N N N N N N -21.173 -9.538  2.997  -9.219 2.548  0.473  H252 YR8 41 
YR8 H131 H8  H 0 0 N N N N N N -23.127 -10.165 12.451 1.718  -2.688 0.199  H131 YR8 42 
YR8 H012 H9  H 0 0 N N N N N N -22.558 -11.550 16.451 4.026  -0.350 2.815  H012 YR8 43 
YR8 H013 H10 H 0 0 N N N N N N -22.168 -13.177 15.798 3.210  -1.871 2.380  H013 YR8 44 
YR8 H011 H11 H 0 0 N N N N N N -21.447 -11.712 15.049 4.972  -1.716 2.177  H011 YR8 45 
YR8 H021 H12 H 0 0 N N N N N N -23.717 -10.982 14.287 3.804  -1.508 -0.000 H021 YR8 46 
YR8 H041 H13 H 0 0 N N N N N N -25.645 -12.867 13.477 5.683  -0.906 -1.173 H041 YR8 47 
YR8 H042 H14 H 0 0 N N N N N N -25.902 -11.306 14.328 6.409  -1.154 0.434  H042 YR8 48 
YR8 H051 H15 H 0 0 N N N N N N -27.337 -12.055 15.665 6.630  1.423  -1.186 H051 YR8 49 
YR8 H061 H16 H 0 0 N N N N N N -27.769 -13.247 13.149 6.796  1.742  1.256  H061 YR8 50 
YR8 H062 H17 H 0 0 N N N N N N -28.673 -12.051 14.138 8.003  0.436  1.358  H062 YR8 51 
YR8 H071 H18 H 0 0 N N N N N N -30.203 -13.752 13.994 8.310  3.036  -0.212 H071 YR8 52 
YR8 H072 H19 H 0 0 N N N N N N -28.949 -15.037 13.968 9.108  2.651  1.331  H072 YR8 53 
YR8 H091 H20 H 0 0 N N N N N N -28.338 -14.819 17.531 10.139 0.539  -2.129 H091 YR8 54 
YR8 H092 H21 H 0 0 N N N N N N -27.998 -15.795 16.062 8.904  1.818  -2.207 H092 YR8 55 
YR8 H101 H22 H 0 0 N N N N N N -26.168 -14.628 15.921 8.627  -0.844 -0.739 H101 YR8 56 
YR8 H102 H23 H 0 0 N N N N N N -26.756 -13.395 17.087 7.850  -0.419 -2.284 H102 YR8 57 
YR8 H301 H24 H 0 0 N N N N N N -20.139 -10.407 8.848  -2.169 0.442  -1.895 H301 YR8 58 
YR8 H321 H25 H 0 0 N N N N N N -21.553 -14.804 10.280 -0.855 1.979  0.420  H321 YR8 59 
YR8 H331 H26 H 0 0 N N N N N N -22.202 -16.001 12.341 1.232  3.186  0.820  H331 YR8 60 
YR8 H341 H27 H 0 0 N N N N N N -23.194 -14.832 14.290 3.368  1.974  0.946  H341 YR8 61 
YR8 H1   H28 H 0 1 N N N N N N -29.847 -13.547 16.321 10.578 2.168  -0.465 H1   YR8 62 
YR8 H2   H30 H 0 1 N N N N N N -22.752 -7.584  10.086 -0.734 -5.399 -0.421 H2   YR8 63 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
YR8 O27 S24  DOUB N N 1  
YR8 S24 O26  DOUB N N 2  
YR8 S24 C25  SING N N 3  
YR8 S24 C23  SING N N 4  
YR8 C23 C22  SING N N 5  
YR8 C22 C21  DOUB Y N 6  
YR8 C22 C28  SING Y N 7  
YR8 F29 C28  SING N N 8  
YR8 C21 C20  SING Y N 9  
YR8 C28 C30  DOUB Y N 10 
YR8 C20 C19  DOUB Y N 11 
YR8 C30 C19  SING Y N 12 
YR8 C19 C18  SING N N 13 
YR8 O17 C15  DOUB N N 14 
YR8 C15 O16  SING N N 15 
YR8 C15 C14  SING N N 16 
YR8 C18 C14  DOUB Y N 17 
YR8 C18 C31  SING Y N 18 
YR8 C14 N13  SING Y N 19 
YR8 C31 C32  DOUB Y N 20 
YR8 C31 C12  SING Y N 21 
YR8 C32 C33  SING Y N 22 
YR8 N13 C12  SING Y N 23 
YR8 C12 C11  DOUB Y N 24 
YR8 C33 C34  DOUB Y N 25 
YR8 C11 C34  SING Y N 26 
YR8 C11 C02  SING N N 27 
YR8 C06 C07  SING N N 28 
YR8 C06 C05  SING N N 29 
YR8 C07 N08  SING N N 30 
YR8 C04 C05  SING N N 31 
YR8 C04 O03  SING N N 32 
YR8 C02 O03  SING N N 33 
YR8 C02 C01  SING N N 34 
YR8 C05 C10  SING N N 35 
YR8 N08 C09  SING N N 36 
YR8 C10 C09  SING N N 37 
YR8 C20 H201 SING N N 38 
YR8 C21 H211 SING N N 39 
YR8 C23 H232 SING N N 40 
YR8 C23 H231 SING N N 41 
YR8 C25 H251 SING N N 42 
YR8 C25 H253 SING N N 43 
YR8 C25 H252 SING N N 44 
YR8 N13 H131 SING N N 45 
YR8 C01 H012 SING N N 46 
YR8 C01 H013 SING N N 47 
YR8 C01 H011 SING N N 48 
YR8 C02 H021 SING N N 49 
YR8 C04 H041 SING N N 50 
YR8 C04 H042 SING N N 51 
YR8 C05 H051 SING N N 52 
YR8 C06 H061 SING N N 53 
YR8 C06 H062 SING N N 54 
YR8 C07 H071 SING N N 55 
YR8 C07 H072 SING N N 56 
YR8 C09 H091 SING N N 57 
YR8 C09 H092 SING N N 58 
YR8 C10 H101 SING N N 59 
YR8 C10 H102 SING N N 60 
YR8 C30 H301 SING N N 61 
YR8 C32 H321 SING N N 62 
YR8 C33 H331 SING N N 63 
YR8 C34 H341 SING N N 64 
YR8 N08 H1   SING N N 65 
YR8 O16 H2   SING N N 66 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
YR8 InChI            InChI                1.06  "InChI=1S/C25H29FN2O5S/c1-15(33-13-16-8-10-27-11-9-16)19-4-3-5-20-22(24(25(29)30)28-23(19)20)17-6-7-18(21(26)12-17)14-34(2,31)32/h3-7,12,15-16,27-28H,8-11,13-14H2,1-2H3,(H,29,30)/t15-/m0/s1" 
YR8 InChIKey         InChI                1.06  SWCGWGMQDNKNCV-HNNXBMFYSA-N                                                                                                                                                                    
YR8 SMILES_CANONICAL CACTVS               3.385 "C[C@H](OCC1CCNCC1)c2cccc3c2[nH]c(C(O)=O)c3c4ccc(C[S](C)(=O)=O)c(F)c4"                                                                                                                         
YR8 SMILES           CACTVS               3.385 "C[CH](OCC1CCNCC1)c2cccc3c2[nH]c(C(O)=O)c3c4ccc(C[S](C)(=O)=O)c(F)c4"                                                                                                                          
YR8 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "C[C@@H](c1cccc2c1[nH]c(c2c3ccc(c(c3)F)CS(=O)(=O)C)C(=O)O)OCC4CCNCC4"                                                                                                                          
YR8 SMILES           "OpenEye OEToolkits" 2.0.7 "CC(c1cccc2c1[nH]c(c2c3ccc(c(c3)F)CS(=O)(=O)C)C(=O)O)OCC4CCNCC4"                                                                                                                               
# 
_pdbx_chem_comp_identifier.comp_id           YR8 
_pdbx_chem_comp_identifier.type              "SYSTEMATIC NAME" 
_pdbx_chem_comp_identifier.program           "OpenEye OEToolkits" 
_pdbx_chem_comp_identifier.program_version   2.0.7 
_pdbx_chem_comp_identifier.identifier        "3-[3-fluoranyl-4-(methylsulfonylmethyl)phenyl]-7-[(1~{S})-1-(piperidin-4-ylmethoxy)ethyl]-1~{H}-indole-2-carboxylic acid" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
YR8 "Create component" 2023-06-20 PDBE 
YR8 "Initial release"  2024-07-10 RCSB 
# 
