data_YP8
# 
_chem_comp.id                                    YP8 
_chem_comp.name                                  "(8S)-5-benzyl-2-({[(5P)-2-chloro-5-(1-methyl-1H-pyrazol-3-yl)phenyl]methyl}amino)[1,2,4]triazolo[1,5-a]pyrimidin-7(4H)-one" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C23 H20 Cl N7 O" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2023-02-15 
_chem_comp.pdbx_modified_date                    2024-02-16 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        445.904 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     YP8 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        7FUG 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
YP8 C10  C1  C  0 1 N N N N N N 2.589  25.059 14.332 5.018  -0.815 -0.072 C10  YP8 1  
YP8 C15  C2  C  0 1 Y N N N N N 7.561  23.853 18.006 -3.993 0.031  -0.306 C15  YP8 2  
YP8 C16  C3  C  0 1 Y N N N N N 8.235  22.678 17.668 -5.280 0.045  0.228  C16  YP8 3  
YP8 C17  C4  C  0 1 Y N N N N N 9.574  22.749 17.302 -5.762 -1.075 0.902  C17  YP8 4  
YP8 C18  C5  C  0 1 Y N N N N N 10.229 23.959 17.297 -4.963 -2.193 1.038  C18  YP8 5  
YP8 C19  C6  C  0 1 Y N N N N N 9.546  25.110 17.636 -3.685 -2.201 0.506  C19  YP8 6  
YP8 C21  C7  C  0 1 Y N N N N N 7.529  21.385 17.648 -6.135 1.249  0.080  C21  YP8 7  
YP8 C22  C8  C  0 1 Y N N N N N 8.070  20.084 17.721 -7.448 1.398  0.567  C22  YP8 8  
YP8 C23  C9  C  0 1 Y N N N N N 7.007  19.245 17.609 -7.878 2.633  0.229  C23  YP8 9  
YP8 C26  C10 C  0 1 N N N N N N 4.525  19.590 17.280 -6.931 4.606  -0.998 C26  YP8 10 
YP8 C27  C11 C  0 1 Y N N N N N 1.688  26.290 12.455 6.809  0.742  0.580  C27  YP8 11 
YP8 C28  C12 C  0 1 Y N N N N N 2.423  27.146 11.639 6.571  1.411  1.766  C28  YP8 12 
YP8 C1   C13 C  0 1 Y N N N N N 8.202  25.095 17.995 -3.204 -1.092 -0.170 C1   YP8 13 
YP8 C12  C14 C  0 1 Y N N N N N 4.224  25.592 15.974 2.678  -0.852 0.331  C12  YP8 14 
YP8 C14  C15 C  0 1 N N N N N N 2.242  24.945 12.870 6.430  -0.710 0.445  C14  YP8 15 
YP8 C2   C16 C  0 1 N N N N N N 7.474  26.370 18.366 -1.812 -1.109 -0.747 C2   YP8 16 
YP8 C29  C17 C  0 1 Y N N N N N 1.918  28.385 11.275 6.914  2.745  1.888  C29  YP8 17 
YP8 C30  C18 C  0 1 Y N N N N N 0.675  28.786 11.720 7.494  3.409  0.825  C30  YP8 18 
YP8 C31  C19 C  0 1 Y N N N N N -0.070 27.943 12.520 7.733  2.741  -0.361 C31  YP8 19 
YP8 C32  C20 C  0 1 Y N N N N N 0.435  26.707 12.892 7.389  1.407  -0.484 C32  YP8 20 
YP8 C4   C21 C  0 1 Y N N N N N 5.108  25.876 17.831 0.529  -0.958 0.044  C4   YP8 21 
YP8 C7   C22 C  0 1 N N N N N N 2.000  24.888 16.705 3.467  -1.075 -1.870 C7   YP8 22 
YP8 C9   C23 C  0 1 N N N N N N 1.688  24.772 15.310 4.793  -0.972 -1.396 C9   YP8 23 
YP8 N11  N1  N  0 1 N N N N N N 3.860  25.464 14.668 3.969  -0.757 0.796  N11  YP8 24 
YP8 N13  N2  N  0 1 Y N N N N N 5.386  25.945 16.487 1.511  -0.826 0.941  N13  YP8 25 
YP8 N24  N3  N  0 1 Y N N N N N 5.910  20.019 17.446 -6.884 3.249  -0.447 N24  YP8 26 
YP8 N25  N4  N  0 1 Y N N N N N 6.202  21.344 17.463 -5.798 2.368  -0.526 N25  YP8 27 
YP8 N3   N5  N  0 1 N N N N N N 6.080  26.186 18.757 -0.834 -0.970 0.335  N3   YP8 28 
YP8 N5   N6  N  0 1 Y N N N N N 3.888  25.504 18.183 1.051  -1.063 -1.157 N5   YP8 29 
YP8 N6   N7  N  0 1 Y N N N N N 3.313  25.321 16.933 2.443  -1.005 -1.001 N6   YP8 30 
YP8 O8   O1  O  0 1 N N N N N N 1.238  24.663 17.655 3.252  -1.216 -3.060 O8   YP8 31 
YP8 CL20 CL1 CL 0 0 N N N N N N 10.417 26.612 17.614 -2.684 -3.609 0.681  CL20 YP8 32 
YP8 H40  H1  H  0 1 N N N N N N 6.518  23.801 18.283 -3.616 0.897  -0.829 H40  YP8 33 
YP8 H41  H2  H  0 1 N N N N N N 10.103 21.850 17.020 -6.758 -1.069 1.318  H41  YP8 34 
YP8 H42  H3  H  0 1 N N N N N N 11.274 24.008 17.029 -5.335 -3.061 1.561  H42  YP8 35 
YP8 H43  H4  H  0 1 N N N N N N 9.108  19.813 17.841 -8.011 0.657  1.115  H43  YP8 36 
YP8 H44  H5  H  0 1 N N N N N N 7.033  18.166 17.644 -8.846 3.054  0.457  H44  YP8 37 
YP8 H45  H6  H  0 1 N N N N N N 3.876  20.473 17.186 -6.573 5.314  -0.250 H45  YP8 38 
YP8 H46  H7  H  0 1 N N N N N N 4.438  18.974 16.373 -6.299 4.661  -1.883 H46  YP8 39 
YP8 H47  H8  H  0 1 N N N N N N 4.217  19.000 18.155 -7.958 4.853  -1.268 H47  YP8 40 
YP8 H48  H9  H  0 1 N N N N N N 3.397  26.842 11.286 6.117  0.892  2.597  H48  YP8 41 
YP8 H38  H10 H  0 1 N N N N N N 3.141  24.707 12.283 6.497  -1.195 1.418  H38  YP8 42 
YP8 H39  H11 H  0 1 N N N N N N 1.487  24.160 12.719 7.109  -1.199 -0.253 H39  YP8 43 
YP8 H33  H12 H  0 1 N N N N N N 8.007  26.836 19.208 -1.646 -2.051 -1.269 H33  YP8 44 
YP8 H34  H13 H  0 1 N N N N N N 7.500  27.044 17.497 -1.699 -0.281 -1.447 H34  YP8 45 
YP8 H49  H14 H  0 1 N N N N N N 2.499  29.038 10.641 6.727  3.267  2.815  H49  YP8 46 
YP8 H50  H15 H  0 1 N N N N N N 0.287  29.755 11.444 7.761  4.452  0.920  H50  YP8 47 
YP8 H51  H16 H  0 1 N N N N N N -1.050 28.248 12.857 8.186  3.260  -1.193 H51  YP8 48 
YP8 H52  H17 H  0 1 N N N N N N -0.151 26.060 13.528 7.575  0.885  -1.411 H52  YP8 49 
YP8 H36  H18 H  0 1 N N N N N N 0.699  24.444 15.025 5.622  -1.018 -2.087 H36  YP8 50 
YP8 H37  H19 H  0 1 N N N N N N 4.523  25.666 13.947 4.133  -0.648 1.746  H37  YP8 51 
YP8 H35  H20 H  0 1 N N N N N N 6.071  25.449 19.433 -1.134 -0.887 1.253  H35  YP8 52 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
YP8 C1  C2   SING N N 1  
YP8 C1  C15  DOUB Y N 2  
YP8 C1  C19  SING Y N 3  
YP8 C2  N3   SING N N 4  
YP8 N3  C4   SING N N 5  
YP8 C4  N5   DOUB Y N 6  
YP8 C4  N13  SING Y N 7  
YP8 N5  N6   SING Y N 8  
YP8 N6  C7   SING N N 9  
YP8 N6  C12  SING Y N 10 
YP8 C7  O8   DOUB N N 11 
YP8 C7  C9   SING N N 12 
YP8 C9  C10  DOUB N N 13 
YP8 C10 N11  SING N N 14 
YP8 C10 C14  SING N N 15 
YP8 N11 C12  SING N N 16 
YP8 C12 N13  DOUB Y N 17 
YP8 C14 C27  SING N N 18 
YP8 C15 C16  SING Y N 19 
YP8 C16 C17  DOUB Y N 20 
YP8 C16 C21  SING N N 21 
YP8 C17 C18  SING Y N 22 
YP8 C18 C19  DOUB Y N 23 
YP8 C19 CL20 SING N N 24 
YP8 C21 C22  SING Y N 25 
YP8 C21 N25  DOUB Y N 26 
YP8 C22 C23  DOUB Y N 27 
YP8 C23 N24  SING Y N 28 
YP8 N24 N25  SING Y N 29 
YP8 N24 C26  SING N N 30 
YP8 C27 C28  DOUB Y N 31 
YP8 C27 C32  SING Y N 32 
YP8 C28 C29  SING Y N 33 
YP8 C29 C30  DOUB Y N 34 
YP8 C30 C31  SING Y N 35 
YP8 C31 C32  DOUB Y N 36 
YP8 C15 H40  SING N N 37 
YP8 C17 H41  SING N N 38 
YP8 C18 H42  SING N N 39 
YP8 C22 H43  SING N N 40 
YP8 C23 H44  SING N N 41 
YP8 C26 H45  SING N N 42 
YP8 C26 H46  SING N N 43 
YP8 C26 H47  SING N N 44 
YP8 C28 H48  SING N N 45 
YP8 C14 H38  SING N N 46 
YP8 C14 H39  SING N N 47 
YP8 C2  H33  SING N N 48 
YP8 C2  H34  SING N N 49 
YP8 C29 H49  SING N N 50 
YP8 C30 H50  SING N N 51 
YP8 C31 H51  SING N N 52 
YP8 C32 H52  SING N N 53 
YP8 C9  H36  SING N N 54 
YP8 N11 H37  SING N N 55 
YP8 N3  H35  SING N N 56 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
YP8 SMILES           ACDLabs              12.01 "Cn1ccc(n1)c1cc(CNc2nc3NC(=CC(=O)n3n2)Cc2ccccc2)c(Cl)cc1"                                                                                                               
YP8 InChI            InChI                1.06  "InChI=1S/C23H20ClN7O/c1-30-10-9-20(28-30)16-7-8-19(24)17(12-16)14-25-22-27-23-26-18(13-21(32)31(23)29-22)11-15-5-3-2-4-6-15/h2-10,12-13H,11,14H2,1H3,(H2,25,26,27,29)" 
YP8 InChIKey         InChI                1.06  SOXDVBYVZVNDNX-UHFFFAOYSA-N                                                                                                                                             
YP8 SMILES_CANONICAL CACTVS               3.385 "Cn1ccc(n1)c2ccc(Cl)c(CNc3nn4C(=O)C=C(Cc5ccccc5)Nc4n3)c2"                                                                                                               
YP8 SMILES           CACTVS               3.385 "Cn1ccc(n1)c2ccc(Cl)c(CNc3nn4C(=O)C=C(Cc5ccccc5)Nc4n3)c2"                                                                                                               
YP8 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "Cn1ccc(n1)c2ccc(c(c2)CNc3nc4n(n3)C(=O)C=C(N4)Cc5ccccc5)Cl"                                                                                                             
YP8 SMILES           "OpenEye OEToolkits" 2.0.7 "Cn1ccc(n1)c2ccc(c(c2)CNc3nc4n(n3)C(=O)C=C(N4)Cc5ccccc5)Cl"                                                                                                             
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
YP8 "SYSTEMATIC NAME" ACDLabs              12.01 "(8S)-5-benzyl-2-({[(5P)-2-chloro-5-(1-methyl-1H-pyrazol-3-yl)phenyl]methyl}amino)[1,2,4]triazolo[1,5-a]pyrimidin-7(4H)-one" 
YP8 "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "2-[[2-chloranyl-5-(1-methylpyrazol-3-yl)phenyl]methylamino]-5-(phenylmethyl)-4~{H}-[1,2,4]triazolo[1,5-a]pyrimidin-7-one"   
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
YP8 "Create component" 2023-02-15 RCSB 
YP8 "Initial release"  2024-02-21 RCSB 
# 
