data_WH8
# 
_chem_comp.id                                    WH8 
_chem_comp.name                                  "(2S,3S)-3-dodecylsulfanyl-2-methyl-butanoic acid" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C17 H34 O2 S" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2023-10-04 
_chem_comp.pdbx_modified_date                    2024-10-04 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        302.516 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     WH8 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        8QOO 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  PDBE 
_chem_comp.pdbx_pcm                              Y 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
WH8 C11 C1  C 0 1 N N N N N N 3.527  12.800 8.743  6.724   1.119  0.264  C11 WH8 1  
WH8 C12 C2  C 0 1 N N S N N N 3.312  14.280 8.464  6.574   -0.360 0.017  C12 WH8 2  
WH8 C13 C3  C 0 1 N N N N N N 3.702  15.081 9.700  6.668   -0.638 -1.485 C13 WH8 3  
WH8 C21 C4  C 0 1 N N N N N N -0.816 21.165 6.935  -2.606  -0.387 0.399  C21 WH8 4  
WH8 C14 C5  C 0 1 N N S N N N 1.847  14.505 8.012  5.214   -0.829 0.538  C14 WH8 5  
WH8 C17 C6  C 0 1 N N N N N N -0.384 16.215 7.868  2.386   -0.609 0.405  C17 WH8 6  
WH8 C18 C7  C 0 1 N N N N N N -1.075 17.523 8.209  1.162   -0.040 -0.315 C18 WH8 7  
WH8 C19 C8  C 0 1 N N N N N N -0.383 18.747 7.636  -0.110  -0.498 0.402  C19 WH8 8  
WH8 C20 C9  C 0 1 N N N N N N -1.340 19.739 6.993  -1.334  0.072  -0.317 C20 WH8 9  
WH8 C15 C10 C 0 1 N N N N N N 1.693  14.204 6.524  5.121   -2.352 0.422  C15 WH8 10 
WH8 C23 C11 C 0 1 N N N N N N -1.067 23.351 8.211  -5.102  -0.275 0.396  C23 WH8 11 
WH8 C24 C12 C 0 1 N N N N N N 0.161  24.214 8.426  -6.326  0.294  -0.323 C24 WH8 12 
WH8 C25 C13 C 0 1 N N N N N N 0.859  23.925 9.740  -7.598  -0.164 0.394  C25 WH8 13 
WH8 C28 C14 C 0 1 N N N N N N 1.719  23.982 12.426 -11.318 0.517  -0.328 C28 WH8 14 
WH8 C22 C15 C 0 1 N N N N N N -0.797 21.858 8.287  -3.830  0.183  -0.320 C22 WH8 15 
WH8 C26 C16 C 0 1 N N N N N N 1.933  24.930 10.114 -8.822  0.406  -0.326 C26 WH8 16 
WH8 C27 C17 C 0 1 N N N N N N 2.662  24.536 11.380 -10.094 -0.052 0.391  C27 WH8 17 
WH8 O29 O1  O 0 1 N N N N N N 2.891  12.212 9.612  5.754   1.839  0.227  O29 WH8 18 
WH8 S16 S1  S 0 1 N N N N N N 1.359  16.223 8.359  3.894   -0.066 -0.445 S16 WH8 19 
WH8 H2  H2  H 0 1 N N N N N N 3.973  14.577 7.636  7.367   -0.897 0.537  H2  WH8 20 
WH8 H3  H3  H 0 1 N N N N N N 4.750  14.870 9.959  7.637   -0.304 -1.856 H3  WH8 21 
WH8 H4  H4  H 0 1 N N N N N N 3.585  16.155 9.493  6.560   -1.708 -1.663 H4  WH8 22 
WH8 H5  H5  H 0 1 N N N N N N 3.053  14.797 10.541 5.875   -0.101 -2.004 H5  WH8 23 
WH8 H6  H6  H 0 1 N N N N N N 0.210  21.143 6.540  -2.655  -1.475 0.392  H6  WH8 24 
WH8 H7  H7  H 0 1 N N N N N N -1.458 21.745 6.255  -2.591  -0.030 1.429  H7  WH8 25 
WH8 H8  H8  H 0 1 N N N N N N 1.175  13.861 8.598  5.104   -0.537 1.582  H8  WH8 26 
WH8 H9  H9  H 0 1 N N N N N N -0.897 15.395 8.392  2.401   -0.253 1.434  H9  WH8 27 
WH8 H10 H10 H 0 1 N N N N N N -0.447 16.053 6.782  2.338   -1.698 0.398  H10 WH8 28 
WH8 H11 H11 H 0 1 N N N N N N -1.108 17.623 9.304  1.210   1.049  -0.308 H11 WH8 29 
WH8 H12 H12 H 0 1 N N N N N N -2.101 17.487 7.813  1.147   -0.396 -1.345 H12 WH8 30 
WH8 H13 H13 H 0 1 N N N N N N 0.338  18.415 6.874  -0.159  -1.587 0.395  H13 WH8 31 
WH8 H14 H14 H 0 1 N N N N N N 0.153  19.257 8.450  -0.095  -0.141 1.432  H14 WH8 32 
WH8 H15 H15 H 0 1 N N N N N N -2.276 19.739 7.571  -1.349  -0.285 -1.347 H15 WH8 33 
WH8 H16 H16 H 0 1 N N N N N N -1.544 19.405 5.965  -1.286  1.161  -0.311 H16 WH8 34 
WH8 H17 H17 H 0 1 N N N N N N 1.991  13.164 6.327  5.975   -2.807 0.923  H17 WH8 35 
WH8 H18 H18 H 0 1 N N N N N N 0.643  14.347 6.228  4.199   -2.696 0.891  H18 WH8 36 
WH8 H19 H19 H 0 1 N N N N N N 2.334  14.885 5.944  5.121   -2.637 -0.630 H19 WH8 37 
WH8 H20 H20 H 0 1 N N N N N N -1.478 23.577 7.216  -5.087  0.081  1.426  H20 WH8 38 
WH8 H21 H21 H 0 1 N N N N N N -1.809 23.608 8.982  -5.150  -1.364 0.389  H21 WH8 39 
WH8 H22 H22 H 0 1 N N N N N N 0.869  24.030 7.604  -6.278  1.383  -0.316 H22 WH8 40 
WH8 H23 H23 H 0 1 N N N N N N -0.146 25.270 8.416  -6.341  -0.062 -1.353 H23 WH8 41 
WH8 H24 H24 H 0 1 N N N N N N 0.102  23.918 10.538 -7.647  -1.253 0.387  H24 WH8 42 
WH8 H25 H25 H 0 1 N N N N N N 1.327  22.932 9.670  -7.583  0.193  1.424  H25 WH8 43 
WH8 H26 H26 H 0 1 N N N N N N 2.289  23.709 13.327 -11.270 1.606  -0.322 H26 WH8 44 
WH8 H27 H27 H 0 1 N N N N N N 0.969  24.744 12.684 -11.333 0.161  -1.358 H27 WH8 45 
WH8 H28 H28 H 0 1 N N N N N N 1.213  23.090 12.028 -12.224 0.191  0.182  H28 WH8 46 
WH8 H29 H29 H 0 1 N N N N N N -1.567 21.398 8.924  -3.782  1.272  -0.313 H29 WH8 47 
WH8 H30 H30 H 0 1 N N N N N N 0.193  21.707 8.741  -3.845  -0.174 -1.350 H30 WH8 48 
WH8 H31 H31 H 0 1 N N N N N N 2.660  24.995 9.291  -8.774  1.495  -0.319 H31 WH8 49 
WH8 H32 H32 H 0 1 N N N N N N 1.462  25.912 10.266 -8.837  0.049  -1.356 H32 WH8 50 
WH8 H33 H33 H 0 1 N N N N N N 3.411  23.769 11.135 -10.079 0.304  1.421  H33 WH8 51 
WH8 H34 H34 H 0 1 N N N N N N 3.167  25.423 11.790 -10.142 -1.141 0.384  H34 WH8 52 
WH8 O1  O2  O 0 1 N N N N N N 4.437  12.205 7.980  7.933   1.635  0.531  O1  WH8 53 
WH8 H1  H1  H 0 1 N N N N N N 4.501  11.288 8.219  7.979   2.589  0.687  H1  WH8 54 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
WH8 C15 C14 SING N N 1  
WH8 C21 C20 SING N N 2  
WH8 C21 C22 SING N N 3  
WH8 C20 C19 SING N N 4  
WH8 C19 C18 SING N N 5  
WH8 C17 C18 SING N N 6  
WH8 C17 S16 SING N N 7  
WH8 C14 S16 SING N N 8  
WH8 C14 C12 SING N N 9  
WH8 C23 C22 SING N N 10 
WH8 C23 C24 SING N N 11 
WH8 C24 C25 SING N N 12 
WH8 C12 C11 SING N N 13 
WH8 C12 C13 SING N N 14 
WH8 C11 O29 DOUB N N 15 
WH8 C25 C26 SING N N 16 
WH8 C26 C27 SING N N 17 
WH8 C27 C28 SING N N 18 
WH8 C12 H2  SING N N 19 
WH8 C13 H3  SING N N 20 
WH8 C13 H4  SING N N 21 
WH8 C13 H5  SING N N 22 
WH8 C21 H6  SING N N 23 
WH8 C21 H7  SING N N 24 
WH8 C14 H8  SING N N 25 
WH8 C17 H9  SING N N 26 
WH8 C17 H10 SING N N 27 
WH8 C18 H11 SING N N 28 
WH8 C18 H12 SING N N 29 
WH8 C19 H13 SING N N 30 
WH8 C19 H14 SING N N 31 
WH8 C20 H15 SING N N 32 
WH8 C20 H16 SING N N 33 
WH8 C15 H17 SING N N 34 
WH8 C15 H18 SING N N 35 
WH8 C15 H19 SING N N 36 
WH8 C23 H20 SING N N 37 
WH8 C23 H21 SING N N 38 
WH8 C24 H22 SING N N 39 
WH8 C24 H23 SING N N 40 
WH8 C25 H24 SING N N 41 
WH8 C25 H25 SING N N 42 
WH8 C28 H26 SING N N 43 
WH8 C28 H27 SING N N 44 
WH8 C28 H28 SING N N 45 
WH8 C22 H29 SING N N 46 
WH8 C22 H30 SING N N 47 
WH8 C26 H31 SING N N 48 
WH8 C26 H32 SING N N 49 
WH8 C27 H33 SING N N 50 
WH8 C27 H34 SING N N 51 
WH8 C11 O1  SING N N 52 
WH8 O1  H1  SING N N 53 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
WH8 InChI            InChI                1.06  "InChI=1S/C17H34O2S/c1-4-5-6-7-8-9-10-11-12-13-14-20-16(3)15(2)17(18)19/h15-16H,4-14H2,1-3H3,(H,18,19)/t15-,16+/m1/s1" 
WH8 InChIKey         InChI                1.06  YKCSGXHNGYGGRC-CVEARBPZSA-N                                                                                            
WH8 SMILES_CANONICAL CACTVS               3.385 "CCCCCCCCCCCCS[C@@H](C)[C@@H](C)C(O)=O"                                                                                
WH8 SMILES           CACTVS               3.385 "CCCCCCCCCCCCS[CH](C)[CH](C)C(O)=O"                                                                                    
WH8 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CCCCCCCCCCCCS[C@@H](C)[C@@H](C)C(=O)O"                                                                                
WH8 SMILES           "OpenEye OEToolkits" 2.0.7 "CCCCCCCCCCCCSC(C)C(C)C(=O)O"                                                                                          
# 
_pdbx_chem_comp_identifier.comp_id           WH8 
_pdbx_chem_comp_identifier.type              "SYSTEMATIC NAME" 
_pdbx_chem_comp_identifier.program           "OpenEye OEToolkits" 
_pdbx_chem_comp_identifier.program_version   2.0.7 
_pdbx_chem_comp_identifier.identifier        "(2~{S},3~{S})-3-dodecylsulfanyl-2-methyl-butanoic acid" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
WH8 "Create component"   2023-10-04 PDBE 
WH8 "Modify coordinates" 2023-10-11 PDBE 
WH8 "Modify PCM"         2024-09-27 PDBE 
WH8 "Initial release"    2024-10-09 RCSB 
# 
_pdbx_chem_comp_pcm.pcm_id                             1 
_pdbx_chem_comp_pcm.comp_id                            WH8 
_pdbx_chem_comp_pcm.modified_residue_id                LYS 
_pdbx_chem_comp_pcm.type                               None 
_pdbx_chem_comp_pcm.category                           Lipid/lipid-like 
_pdbx_chem_comp_pcm.position                           "Amino-acid side chain" 
_pdbx_chem_comp_pcm.polypeptide_position               "Any position" 
_pdbx_chem_comp_pcm.comp_id_linking_atom               C11 
_pdbx_chem_comp_pcm.modified_residue_id_linking_atom   NZ 
_pdbx_chem_comp_pcm.uniprot_specific_ptm_accession     ? 
_pdbx_chem_comp_pcm.uniprot_generic_ptm_accession      ? 
# 
