data_TT8
#

_chem_comp.id                                   TT8
_chem_comp.name                                 
;(2S)-2-azanyl-4-[[(2S,3S,4R,5R)-5-[6-(methylamino)purin-9-yl]-3,4-bis(oxidanyl)oxolan-2-yl]methylsulfanyl]butanoic
acid
;

_chem_comp.type                                 NON-POLYMER
_chem_comp.pdbx_type                            HETAIN
_chem_comp.formula                              "C15 H22 N6 O5 S"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        "S-(N6-Methyladenosyl)-L-homocysteine"
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2011-07-13
_chem_comp.pdbx_modified_date                   2020-06-17
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       398.437
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    TT8
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       3SR4
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 RCSB
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
TT8  C       C       C  0  1  N  N  N  41.941  53.507   0.977  -7.495  -1.820   0.119  C       TT8   1  
TT8  N       N       N  0  1  N  N  N  41.821  51.139   1.604  -7.257   0.406  -0.826  N       TT8   2  
TT8  O       O       O  0  1  N  N  N  42.688  53.112   0.064  -8.468  -1.399   0.700  O       TT8   3  
TT8  C1      C1      C  0  1  N  N  N  47.507  43.517   9.610   7.402  -3.356  -0.375  C1      TT8   4  
TT8  N1      N1      N  0  1  Y  N  N  43.845  43.658   8.614   6.420  -0.872   0.461  N1      TT8   5  
TT8  C2      C2      C  0  1  Y  N  N  42.805  44.499   8.190   6.022   0.317   0.874  C2      TT8   6  
TT8  N3      N3      N  0  1  Y  N  N  43.089  45.858   8.033   4.766   0.705   0.805  N3      TT8   7  
TT8  C4      C4      C  0  1  Y  N  N  44.346  46.364   8.282   3.834  -0.102   0.309  C4      TT8   8  
TT8  C5      C5      C  0  1  Y  N  N  45.393  45.520   8.708   4.208  -1.379  -0.144  C5      TT8   9  
TT8  C6      C6      C  0  1  Y  N  N  45.133  44.138   8.876   5.560  -1.747  -0.050  C6      TT8  10  
TT8  N6      N6      N  0  1  N  N  N  46.076  43.257   9.276   5.988  -2.991  -0.480  N6      TT8  11  
TT8  N7      N7      N  0  1  Y  N  N  46.492  46.284   8.867   3.084  -1.988  -0.593  N7      TT8  12  
TT8  C8      C8      C  0  1  Y  N  N  46.195  47.565   8.563   2.069  -1.185  -0.449  C8      TT8  13  
TT8  N9      N9      N  0  1  Y  N  N  44.863  47.628   8.197   2.481  -0.009   0.104  N9      TT8  14  
TT8  CA      CA      C  0  1  N  N  S  41.515  52.530   2.076  -6.561  -0.864  -0.577  CA      TT8  15  
TT8  CB      CB      C  0  1  N  N  N  42.202  52.807   3.445  -5.338  -0.610   0.307  CB      TT8  16  
TT8  SD      SD      S  0  1  N  N  N  44.539  53.004   5.027  -2.883   0.560   0.598  SD      TT8  17  
TT8  CG      CG      C  0  1  N  N  N  43.741  52.670   3.440  -4.333   0.260  -0.450  CG      TT8  18  
TT8  "C1'"   "C1'"   C  0  1  N  N  R  44.096  48.820   7.771   1.633   1.143   0.421  "C1'"   TT8  19  
TT8  "C2'"   "C2'"   C  0  1  N  N  R  44.288  50.015   8.679   1.656   2.172  -0.737  "C2'"   TT8  20  
TT8  "O2'"   "O2'"   O  0  1  N  N  N  43.478  49.934   9.824   2.758   3.071  -0.600  "O2'"   TT8  21  
TT8  "C3'"   "C3'"   C  0  1  N  N  S  43.924  51.184   7.767   0.311   2.914  -0.539  "C3'"   TT8  22  
TT8  "O3'"   "O3'"   O  0  1  N  N  N  42.631  51.714   7.998   0.514   4.136   0.174  "O3'"   TT8  23  
TT8  "C4'"   "C4'"   C  0  1  N  N  S  44.084  50.621   6.356  -0.539   1.937   0.297  "C4'"   TT8  24  
TT8  "O4'"   "O4'"   O  0  1  N  N  N  44.519  49.270   6.492   0.246   0.749   0.495  "O4'"   TT8  25  
TT8  "C5'"   "C5'"   C  0  1  N  N  N  45.131  51.373   5.546  -1.825   1.591  -0.455  "C5'"   TT8  26  
TT8  OXT     OXT     O  0  1  N  N  N  41.569  54.699   0.984  -7.243  -3.138   0.100  OXT     TT8  27  
TT8  HN      HN      H  0  1  N  N  N  41.551  50.481   2.307  -7.564   0.826   0.038  HN      TT8  28  
TT8  HNA     HNA     H  0  1  N  N  N  41.314  50.954   0.762  -6.673   1.041  -1.349  HNA     TT8  29  
TT8  H1      H1      H  0  1  N  N  N  47.994  42.574   9.900   7.710  -3.319   0.670  H1      TT8  30  
TT8  H1A     H1A     H  0  1  N  N  N  48.018  43.938   8.731   7.546  -4.366  -0.760  H1A     TT8  31  
TT8  H1B     H1B     H  0  1  N  N  N  47.565  44.231  10.445   8.003  -2.656  -0.956  H1B     TT8  32  
TT8  H2      H2      H  0  1  N  N  N  41.818  44.109   7.992   6.754   0.998   1.283  H2      TT8  33  
TT8  HN6     HN6     H  0  1  N  N  N  46.126  42.607   8.518   5.350  -3.621  -0.851  HN6     TT8  34  
TT8  H8      H8      H  0  1  N  N  N  46.881  48.399   8.599   1.052  -1.417  -0.727  H8      TT8  35  
TT8  HA      HA      H  0  1  N  N  N  40.437  52.659   2.254  -6.241  -1.295  -1.526  HA      TT8  36  
TT8  HB      HB      H  0  1  N  N  N  41.959  53.839   3.738  -5.648  -0.098   1.218  HB      TT8  37  
TT8  HBA     HBA     H  0  1  N  N  N  41.804  52.083   4.171  -4.873  -1.562   0.565  HBA     TT8  38  
TT8  HG      HG      H  0  1  N  N  N  43.984  51.636   3.154  -4.023  -0.252  -1.362  HG      TT8  39  
TT8  HGA     HGA     H  0  1  N  N  N  44.139  53.388   2.708  -4.799   1.211  -0.708  HGA     TT8  40  
TT8  "H1'"   "H1'"   H  0  1  N  N  N  43.048  48.485   7.785   1.953   1.608   1.354  "H1'"   TT8  41  
TT8  "H2'"   "H2'"   H  0  1  N  N  N  45.304  50.103   9.092   1.684   1.670  -1.704  "H2'"   TT8  42  
TT8  "HO2'"  "HO2'"  H  0  0  N  N  N  43.623  50.698  10.370   2.815   3.734  -1.301  "HO2'"  TT8  43  
TT8  "H3'"   "H3'"   H  0  1  N  N  N  44.574  52.051   7.953  -0.163   3.108  -1.501  "H3'"   TT8  44  
TT8  "HO3'"  "HO3'"  H  0  0  N  N  N  42.472  52.434   7.399   1.090   4.765  -0.281  "HO3'"  TT8  45  
TT8  "H4'"   "H4'"   H  0  1  N  N  N  43.123  50.713   5.829  -0.780   2.386   1.260  "H4'"   TT8  46  
TT8  "H5'"   "H5'"   H  0  1  N  N  N  45.372  50.784   4.649  -1.578   1.046  -1.366  "H5'"   TT8  47  
TT8  "H5'A"  "H5'A"  H  0  0  N  N  N  46.029  51.505   6.167  -2.353   2.509  -0.713  "H5'A"  TT8  48  
TT8  H22     H22     H  0  1  N  N  N  41.941  55.152   0.237  -7.868  -3.711   0.564  H22     TT8  49  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
TT8  C      O       DOUB  N  N   1  
TT8  C      CA      SING  N  N   2  
TT8  C      OXT     SING  N  N   3  
TT8  N      CA      SING  N  N   4  
TT8  N      HN      SING  N  N   5  
TT8  N      HNA     SING  N  N   6  
TT8  C1     N6      SING  N  N   7  
TT8  C1     H1      SING  N  N   8  
TT8  C1     H1A     SING  N  N   9  
TT8  C1     H1B     SING  N  N  10  
TT8  N1     C2      DOUB  Y  N  11  
TT8  N1     C6      SING  Y  N  12  
TT8  C2     N3      SING  Y  N  13  
TT8  C2     H2      SING  N  N  14  
TT8  N3     C4      DOUB  Y  N  15  
TT8  C4     C5      SING  Y  N  16  
TT8  C4     N9      SING  Y  N  17  
TT8  C5     C6      DOUB  Y  N  18  
TT8  C5     N7      SING  Y  N  19  
TT8  C6     N6      SING  N  N  20  
TT8  N6     HN6     SING  N  N  21  
TT8  N7     C8      DOUB  Y  N  22  
TT8  C8     N9      SING  Y  N  23  
TT8  C8     H8      SING  N  N  24  
TT8  N9     "C1'"   SING  N  N  25  
TT8  CA     CB      SING  N  N  26  
TT8  CA     HA      SING  N  N  27  
TT8  CB     CG      SING  N  N  28  
TT8  CB     HB      SING  N  N  29  
TT8  CB     HBA     SING  N  N  30  
TT8  SD     CG      SING  N  N  31  
TT8  SD     "C5'"   SING  N  N  32  
TT8  CG     HG      SING  N  N  33  
TT8  CG     HGA     SING  N  N  34  
TT8  "C1'"  "C2'"   SING  N  N  35  
TT8  "C1'"  "O4'"   SING  N  N  36  
TT8  "C1'"  "H1'"   SING  N  N  37  
TT8  "C2'"  "O2'"   SING  N  N  38  
TT8  "C2'"  "C3'"   SING  N  N  39  
TT8  "C2'"  "H2'"   SING  N  N  40  
TT8  "O2'"  "HO2'"  SING  N  N  41  
TT8  "C3'"  "O3'"   SING  N  N  42  
TT8  "C3'"  "C4'"   SING  N  N  43  
TT8  "C3'"  "H3'"   SING  N  N  44  
TT8  "O3'"  "HO3'"  SING  N  N  45  
TT8  "C4'"  "O4'"   SING  N  N  46  
TT8  "C4'"  "C5'"   SING  N  N  47  
TT8  "C4'"  "H4'"   SING  N  N  48  
TT8  "C5'"  "H5'"   SING  N  N  49  
TT8  "C5'"  "H5'A"  SING  N  N  50  
TT8  OXT    H22     SING  N  N  51  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
TT8  SMILES            ACDLabs               12.01  "O=C(O)C(N)CCSCC3OC(n2cnc1c(ncnc12)NC)C(O)C3O"  
TT8  InChI             InChI                 1.03   "InChI=1S/C15H22N6O5S/c1-17-12-9-13(19-5-18-12)21(6-20-9)14-11(23)10(22)8(26-14)4-27-3-2-7(16)15(24)25/h5-8,10-11,14,22-23H,2-4,16H2,1H3,(H,24,25)(H,17,18,19)/t7-,8+,10+,11+,14+/m0/s1"  
TT8  InChIKey          InChI                 1.03   GEJILRRXJVSBCM-TWBCTODHSA-N  
TT8  SMILES_CANONICAL  CACTVS                3.370  "CNc1ncnc2n(cnc12)[C@@H]3O[C@H](CSCC[C@H](N)C(O)=O)[C@@H](O)[C@H]3O"  
TT8  SMILES            CACTVS                3.370  "CNc1ncnc2n(cnc12)[CH]3O[CH](CSCC[CH](N)C(O)=O)[CH](O)[CH]3O"  
TT8  SMILES_CANONICAL  "OpenEye OEToolkits"  1.7.2  "CNc1c2c(ncn1)n(cn2)[C@H]3[C@@H]([C@@H]([C@H](O3)CSCC[C@@H](C(=O)O)N)O)O"  
TT8  SMILES            "OpenEye OEToolkits"  1.7.2  "CNc1c2c(ncn1)n(cn2)C3C(C(C(O3)CSCCC(C(=O)O)N)O)O"  
#   #
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
TT8  "SYSTEMATIC NAME"  ACDLabs               12.01  "(2S)-2-amino-4-[({(2S,3S,4R,5R)-3,4-dihydroxy-5-[6-(methylamino)-9H-purin-9-yl]tetrahydrofuran-2-yl}methyl)sulfanyl]butanoic acid (non-preferred name)"  
TT8  "SYSTEMATIC NAME"  "OpenEye OEToolkits"  1.7.2  "(2S)-2-azanyl-4-[[(2S,3S,4R,5R)-5-[6-(methylamino)purin-9-yl]-3,4-bis(oxidanyl)oxolan-2-yl]methylsulfanyl]butanoic acid"  
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
TT8  "Create component"  2011-07-13  RCSB  
TT8  "Modify synonyms"   2020-06-05  PDBE  
#
_pdbx_chem_comp_synonyms.ordinal     1
_pdbx_chem_comp_synonyms.comp_id     TT8
_pdbx_chem_comp_synonyms.name        "S-(N6-Methyladenosyl)-L-homocysteine"
_pdbx_chem_comp_synonyms.provenance  ?
_pdbx_chem_comp_synonyms.type        ?
##
