data_SA8
#

_chem_comp.id                                   SA8
_chem_comp.name                                 "S-5'-AZAMETHIONINE-5'-DEOXYADENOSINE"
_chem_comp.type                                 NON-POLYMER
_chem_comp.pdbx_type                            HETAIN
_chem_comp.formula                              "C15 H23 N7 O5"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        "5'-[N-[(3S)-3-AMINO-3-CARBOXYPROPYL]-N-METHYLAMINO]-5'-DEOXYADENOSINE"
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2005-03-16
_chem_comp.pdbx_modified_date                   2020-06-17
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       381.387
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    SA8
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       ?
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       1Z3C
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 RCSB
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
SA8  N       N     N  0  1  N  N  N  13.352  30.167  91.233  -6.637  -0.282   0.811  N       SA8   1  
SA8  CA      CA    C  0  1  N  N  S  13.972  31.091  92.234  -5.767   0.879   0.583  CA      SA8   2  
SA8  C       C     C  0  1  N  N  N  13.194  32.390  92.354  -6.547   1.964  -0.113  C       SA8   3  
SA8  O       O     O  0  1  N  N  N  12.194  32.558  91.653  -6.115   3.234  -0.072  O       SA8   4  
SA8  OXT     OXT   O  0  1  N  N  N  13.666  33.223  93.201  -7.563   1.690  -0.708  OXT     SA8   5  
SA8  CB      CB    C  0  1  N  N  N  15.411  31.433  91.853  -4.581   0.463  -0.290  CB      SA8   6  
SA8  CG      CG    C  0  1  N  N  N  15.929  30.538  90.805  -3.718  -0.547   0.468  CG      SA8   7  
SA8  ND      ND    N  0  1  N  N  N  17.611  30.833  90.235  -2.580  -0.946  -0.371  ND      SA8   8  
SA8  CE      CE    C  0  1  N  N  N  17.431  32.339  89.277  -3.103  -1.881  -1.375  CE      SA8   9  
SA8  "C5'"   C5*   C  0  1  N  N  N  17.804  29.604  89.059  -1.671  -1.715   0.490  "C5'"   SA8  10  
SA8  "C4'"   C4*   C  0  1  N  N  R  18.004  28.225  89.627  -0.350  -1.951  -0.246  "C4'"   SA8  11  
SA8  "O4'"   O4*   O  0  1  N  N  N  18.056  27.354  88.499   0.334  -0.701  -0.434  "O4'"   SA8  12  
SA8  "C3'"   C3*   C  0  1  N  N  S  19.393  28.023  90.250   0.566  -2.856   0.600  "C3'"   SA8  13  
SA8  "O3'"   O3*   O  0  1  N  N  N  19.148  27.926  91.688   0.883  -4.058  -0.106  "O3'"   SA8  14  
SA8  "C2'"   C2*   C  0  1  N  N  R  19.871  26.674  89.734   1.842  -2.002   0.818  "C2'"   SA8  15  
SA8  "O2'"   O2*   O  0  1  N  N  N  20.478  25.730  90.581   3.019  -2.803   0.695  "O2'"   SA8  16  
SA8  "C1'"   C1*   C  0  1  N  N  R  18.633  26.200  88.953   1.749  -0.977  -0.342  "C1'"   SA8  17  
SA8  N9      N9    N  0  1  Y  N  N  18.914  25.337  87.839   2.492   0.243  -0.018  N9      SA8  18  
SA8  C8      C8    C  0  1  Y  N  N  19.720  25.536  86.755   1.995   1.349   0.605  C8      SA8  19  
SA8  N7      N7    N  0  1  Y  N  N  19.733  24.530  85.926   2.931   2.245   0.734  N7      SA8  20  
SA8  C5      C5    C  0  1  Y  N  N  18.873  23.605  86.505   4.084   1.771   0.204  C5      SA8  21  
SA8  C6      C6    C  0  1  Y  N  N  18.449  22.299  86.113   5.387   2.278   0.061  C6      SA8  22  
SA8  N6      N6    N  0  1  N  N  N  18.889  21.711  84.971   5.710   3.542   0.523  N6      SA8  23  
SA8  N1      N1    N  0  1  Y  N  N  17.559  21.614  86.922   6.302   1.515  -0.528  N1      SA8  24  
SA8  C2      C2    C  0  1  Y  N  N  17.132  22.224  88.061   6.003   0.308  -0.972  C2      SA8  25  
SA8  N3      N3    N  0  1  Y  N  N  17.475  23.450  88.524   4.797  -0.208  -0.859  N3      SA8  26  
SA8  C4      C4    C  0  1  Y  N  N  18.356  24.092  87.686   3.818   0.479  -0.279  C4      SA8  27  
SA8  HN1     1HN   H  0  1  N  N  N  13.242  30.620  90.326  -6.951  -0.592  -0.097  HN1     SA8  28  
SA8  HN2     2HN   H  0  1  N  N  N  13.875  29.295  91.152  -6.052  -1.016   1.181  HN2     SA8  29  
SA8  HA      HA    H  0  1  N  N  N  13.954  30.554  93.211  -5.400   1.252   1.540  HA      SA8  30  
SA8  HO      HO    H  0  1  N  N  N  11.707  33.371  91.728  -6.616   3.930  -0.518  HO      SA8  31  
SA8  HB1     1HB   H  0  1  N  N  N  16.077  31.438  92.747  -3.983   1.342  -0.533  HB1     SA8  32  
SA8  HB2     2HB   H  0  1  N  N  N  15.508  32.503  91.556  -4.949   0.009  -1.210  HB2     SA8  33  
SA8  HG1     1HG   H  0  1  N  N  N  15.234  30.546  89.933  -4.316  -1.426   0.711  HG1     SA8  34  
SA8  HG2     2HG   H  0  1  N  N  N  15.830  29.479  91.139  -3.350  -0.093   1.388  HG2     SA8  35  
SA8  HE1     1HE   H  0  1  N  N  N  16.964  33.191  89.824  -2.291  -2.208  -2.025  HE1     SA8  36  
SA8  HE2     2HE   H  0  1  N  N  N  18.473  32.522  88.924  -3.538  -2.746  -0.875  HE2     SA8  37  
SA8  HE3     3HE   H  0  1  N  N  N  16.662  32.294  88.471  -3.868  -1.384  -1.971  HE3     SA8  38  
SA8  "H5'1"  1H5*  H  0  0  N  N  N  18.635  29.861  88.361  -1.482  -1.159   1.408  "H5'1"  SA8  39  
SA8  "H5'2"  2H5*  H  0  0  N  N  N  16.947  29.610  88.346  -2.127  -2.675   0.734  "H5'2"  SA8  40  
SA8  "H4'"   H4*   H  0  1  N  N  N  17.203  28.052  90.383  -0.542  -2.417  -1.212  "H4'"   SA8  41  
SA8  "H3'"   H3*   H  0  1  N  N  N  20.132  28.824  90.017   0.095  -3.089   1.555  "H3'"   SA8  42  
SA8  H2      H2    H  0  1  N  N  N  20.007  27.801  92.073   1.504  -4.551   0.447  H2      SA8  43  
SA8  "H2'"   H2*   H  0  1  N  N  N  20.808  26.800  89.142   1.815  -1.499   1.784  "H2'"   SA8  44  
SA8  H1      H1    H  0  1  N  N  N  20.777  24.888  90.259   3.018  -3.417   1.443  H1      SA8  45  
SA8  "H1'"   H1*   H  0  1  N  N  N  17.988  25.585  89.622   2.116  -1.414  -1.270  "H1'"   SA8  46  
SA8  H8      H8    H  0  1  N  N  N  20.317  26.443  86.563   0.975   1.466   0.941  H8      SA8  47  
SA8  HN61    1HN6  H  0  0  N  N  N  19.909  21.713  84.994   5.033   4.089   0.951  HN61    SA8  48  
SA8  HN62    2HN6  H  0  0  N  N  N  18.586  20.778  84.691   6.613   3.881   0.418  HN62    SA8  49  
SA8  H3      H3    H  0  1  N  N  N  16.422  21.656  88.685   6.777  -0.278  -1.445  H3      SA8  50  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
SA8  N      CA      SING  N  N   1  
SA8  N      HN1     SING  N  N   2  
SA8  N      HN2     SING  N  N   3  
SA8  CA     C       SING  N  N   4  
SA8  CA     CB      SING  N  N   5  
SA8  CA     HA      SING  N  N   6  
SA8  C      O       SING  N  N   7  
SA8  C      OXT     DOUB  N  N   8  
SA8  O      HO      SING  N  N   9  
SA8  CB     CG      SING  N  N  10  
SA8  CB     HB1     SING  N  N  11  
SA8  CB     HB2     SING  N  N  12  
SA8  CG     ND      SING  N  N  13  
SA8  CG     HG1     SING  N  N  14  
SA8  CG     HG2     SING  N  N  15  
SA8  ND     CE      SING  N  N  16  
SA8  ND     "C5'"   SING  N  N  17  
SA8  CE     HE1     SING  N  N  18  
SA8  CE     HE2     SING  N  N  19  
SA8  CE     HE3     SING  N  N  20  
SA8  "C5'"  "C4'"   SING  N  N  21  
SA8  "C5'"  "H5'1"  SING  N  N  22  
SA8  "C5'"  "H5'2"  SING  N  N  23  
SA8  "C4'"  "O4'"   SING  N  N  24  
SA8  "C4'"  "C3'"   SING  N  N  25  
SA8  "C4'"  "H4'"   SING  N  N  26  
SA8  "O4'"  "C1'"   SING  N  N  27  
SA8  "C3'"  "O3'"   SING  N  N  28  
SA8  "C3'"  "C2'"   SING  N  N  29  
SA8  "C3'"  "H3'"   SING  N  N  30  
SA8  "O3'"  H2      SING  N  N  31  
SA8  "C2'"  "O2'"   SING  N  N  32  
SA8  "C2'"  "C1'"   SING  N  N  33  
SA8  "C2'"  "H2'"   SING  N  N  34  
SA8  "O2'"  H1      SING  N  N  35  
SA8  "C1'"  N9      SING  N  N  36  
SA8  "C1'"  "H1'"   SING  N  N  37  
SA8  N9     C8      SING  Y  N  38  
SA8  N9     C4      SING  Y  N  39  
SA8  C8     N7      DOUB  Y  N  40  
SA8  C8     H8      SING  N  N  41  
SA8  N7     C5      SING  Y  N  42  
SA8  C5     C6      SING  Y  N  43  
SA8  C5     C4      DOUB  Y  N  44  
SA8  C6     N6      SING  N  N  45  
SA8  C6     N1      DOUB  Y  N  46  
SA8  N6     HN61    SING  N  N  47  
SA8  N6     HN62    SING  N  N  48  
SA8  N1     C2      SING  Y  N  49  
SA8  C2     N3      DOUB  Y  N  50  
SA8  C2     H3      SING  N  N  51  
SA8  N3     C4      SING  Y  N  52  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
SA8  SMILES            ACDLabs               10.04  "O=C(O)C(N)CCN(C)CC3OC(n2cnc1c(ncnc12)N)C(O)C3O"  
SA8  SMILES_CANONICAL  CACTVS                3.341  "CN(CC[C@H](N)C(O)=O)C[C@H]1O[C@H]([C@H](O)[C@@H]1O)n2cnc3c(N)ncnc23"  
SA8  SMILES            CACTVS                3.341  "CN(CC[CH](N)C(O)=O)C[CH]1O[CH]([CH](O)[CH]1O)n2cnc3c(N)ncnc23"  
SA8  SMILES_CANONICAL  "OpenEye OEToolkits"  1.5.0  "C[N@@](CC[C@@H](C(=O)O)N)C[C@@H]1[C@H]([C@H]([C@@H](O1)n2cnc3c2ncnc3N)O)O"  
SA8  SMILES            "OpenEye OEToolkits"  1.5.0  "CN(CCC(C(=O)O)N)CC1C(C(C(O1)n2cnc3c2ncnc3N)O)O"  
SA8  InChI             InChI                 1.03   "InChI=1S/C15H23N7O5/c1-21(3-2-7(16)15(25)26)4-8-10(23)11(24)14(27-8)22-6-20-9-12(17)18-5-19-13(9)22/h5-8,10-11,14,23-24H,2-4,16H2,1H3,(H,25,26)(H2,17,18,19)/t7-,8+,10+,11+,14+/m0/s1"  
SA8  InChIKey          InChI                 1.03   JISVTSUBJCPLSV-TWBCTODHSA-N  
#   #
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
SA8  "SYSTEMATIC NAME"  ACDLabs               10.04  "5'-{[(3S)-3-amino-3-carboxypropyl](methyl)amino}-5'-deoxyadenosine"  
SA8  "SYSTEMATIC NAME"  "OpenEye OEToolkits"  1.5.0  "(2S)-2-amino-4-[[(2R,3S,4R,5R)-5-(6-aminopurin-9-yl)-3,4-dihydroxy-oxolan-2-yl]methyl-methyl-amino]butanoic acid"  
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
SA8  "Create component"   2005-03-16  RCSB  
SA8  "Modify descriptor"  2011-06-04  RCSB  
SA8  "Modify synonyms"    2020-06-05  PDBE  
#
_pdbx_chem_comp_synonyms.ordinal     1
_pdbx_chem_comp_synonyms.comp_id     SA8
_pdbx_chem_comp_synonyms.name        "5'-[N-[(3S)-3-AMINO-3-CARBOXYPROPYL]-N-METHYLAMINO]-5'-DEOXYADENOSINE"
_pdbx_chem_comp_synonyms.provenance  ?
_pdbx_chem_comp_synonyms.type        ?
##
