data_S08
# 
_chem_comp.id                                    S08 
_chem_comp.name                                  "2-(6-(((R)-2-amino-2-oxo-1-phenylethyl)carbamoyl)-1-hydroxy-1,3-dihydrobenzo[c][1,2]oxaborol-3-yl)acetic acid" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C18 H17 B N2 O6" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         "2-[(3S)-6-[[(1R)-2-azanyl-2-oxidanylidene-1-phenyl-ethyl]carbamoyl]-1-oxidanyl-3H-2,1-benzoxaborol-3-yl]ethanoic acid" 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2020-11-04 
_chem_comp.pdbx_modified_date                    2024-09-27 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        368.148 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     S08 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        ? 
_chem_comp.pdbx_ideal_coordinates_missing_flag   Y 
_chem_comp.pdbx_model_coordinates_db_code        7AU1 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  PDBE 
_chem_comp.pdbx_pcm                              Y 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
S08 O6  O1  O 0 1 N N N N N N -7.860  -0.094 19.305 ? ? ? O6  S08 1  
S08 C2  C1  C 0 1 N N N N N N -7.504  -0.044 18.134 ? ? ? C2  S08 2  
S08 N   N1  N 0 1 N N N N N N -8.019  -0.893 17.239 ? ? ? N   S08 3  
S08 C1  C2  C 0 1 N N R N N N -8.966  -1.916 17.644 ? ? ? C1  S08 4  
S08 C12 C3  C 0 1 Y N N N N N -8.331  -3.297 17.614 ? ? ? C12 S08 5  
S08 C17 C4  C 0 1 Y N N N N N -7.672  -3.748 16.473 ? ? ? C17 S08 6  
S08 C16 C5  C 0 1 Y N N N N N -7.109  -5.013 16.433 ? ? ? C16 S08 7  
S08 C15 C6  C 0 1 Y N N N N N -7.195  -5.847 17.529 ? ? ? C15 S08 8  
S08 C14 C7  C 0 1 Y N N N N N -7.843  -5.416 18.666 ? ? ? C14 S08 9  
S08 C13 C8  C 0 1 Y N N N N N -8.408  -4.148 18.710 ? ? ? C13 S08 10 
S08 C   C9  C 0 1 N N N N N N -10.254 -1.819 16.789 ? ? ? C   S08 11 
S08 N1  N2  N 0 1 N N N N N N -10.723 -0.611 16.543 ? ? ? N1  S08 12 
S08 O   O2  O 0 1 N N N N N N -10.812 -2.843 16.393 ? ? ? O   S08 13 
S08 C3  C10 C 0 1 Y N N N N N -6.343  0.805  17.740 ? ? ? C3  S08 14 
S08 C11 C11 C 0 1 Y N N N N N -6.092  1.997  18.426 ? ? ? C11 S08 15 
S08 C7  C12 C 0 1 Y N N N N N -4.969  2.778  18.135 ? ? ? C7  S08 16 
S08 B   B1  B 0 1 N N N N N N -4.552  4.320  18.493 ? ? ? B   S08 17 
S08 O1  O3  O 0 1 N N N N N N -3.228  4.392  17.750 ? ? ? O1  S08 18 
S08 C8  C13 C 0 1 N N S N N N -2.997  3.302  16.873 ? ? ? C8  S08 19 
S08 C9  C14 C 0 1 N N N N N N -1.650  2.657  17.115 ? ? ? C9  S08 20 
S08 C10 C15 C 0 1 N N N N N N -0.534  3.478  16.605 ? ? ? C10 S08 21 
S08 O3  O4  O 0 1 N N N N N N -0.590  3.890  15.453 ? ? ? O3  S08 22 
S08 O2  O5  O 0 1 N N N N N N 0.445   3.756  17.480 ? ? ? O2  S08 23 
S08 C6  C16 C 0 1 Y N N N N N -4.119  2.333  17.116 ? ? ? C6  S08 24 
S08 C5  C17 C 0 1 Y N N N N N -4.360  1.159  16.413 ? ? ? C5  S08 25 
S08 C4  C18 C 0 1 Y N N N N N -5.467  0.393  16.731 ? ? ? C4  S08 26 
S08 H1  H1  H 0 1 N N N N N N -7.749  -0.823 16.279 ? ? ? H1  S08 27 
S08 H2  H2  H 0 1 N N N N N N -9.259  -1.716 18.685 ? ? ? H2  S08 28 
S08 H3  H3  H 0 1 N N N N N N -7.599  -3.104 15.609 ? ? ? H3  S08 29 
S08 H4  H4  H 0 1 N N N N N N -6.601  -5.348 15.541 ? ? ? H4  S08 30 
S08 H5  H5  H 0 1 N N N N N N -6.756  -6.833 17.496 ? ? ? H5  S08 31 
S08 H6  H6  H 0 1 N N N N N N -7.912  -6.066 19.526 ? ? ? H6  S08 32 
S08 H7  H7  H 0 1 N N N N N N -8.913  -3.820 19.606 ? ? ? H7  S08 33 
S08 H8  H8  H 0 1 N N N N N N -11.565 -0.499 16.015 ? ? ? H8  S08 34 
S08 H9  H9  H 0 1 N N N N N N -10.237 0.193  16.884 ? ? ? H9  S08 35 
S08 H10 H10 H 0 1 N N N N N N -6.778  2.321  19.195 ? ? ? H10 S08 36 
S08 H12 H12 H 0 1 N N N N N N -3.042  3.643  15.828 ? ? ? H12 S08 37 
S08 H13 H13 H 0 1 N N N N N N -1.630  1.680  16.610 ? ? ? H13 S08 38 
S08 H14 H14 H 0 1 N N N N N N -1.517  2.513  18.197 ? ? ? H14 S08 39 
S08 H15 H15 H 0 1 N N N N N N 1.088   4.321  17.068 ? ? ? H15 S08 40 
S08 H16 H16 H 0 1 N N N N N N -3.689  0.848  15.626 ? ? ? H16 S08 41 
S08 H17 H17 H 0 1 N N N N N N -5.655  -0.527 16.198 ? ? ? H17 S08 42 
S08 O4  O6  O 0 1 N N N N N N -5.609  5.172  18.001 ? ? ? O4  S08 43 
S08 H11 H11 H 0 1 N N N N N N -5.295  5.668  17.254 ? ? ? H11 S08 44 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
S08 O3  C10 DOUB N N 1  
S08 O   C   DOUB N N 2  
S08 C5  C4  DOUB Y N 3  
S08 C5  C6  SING Y N 4  
S08 C16 C17 DOUB Y N 5  
S08 C16 C15 SING Y N 6  
S08 C17 C12 SING Y N 7  
S08 N1  C   SING N N 8  
S08 C10 C9  SING N N 9  
S08 C10 O2  SING N N 10 
S08 C4  C3  SING Y N 11 
S08 C   C1  SING N N 12 
S08 C8  C9  SING N N 13 
S08 C8  C6  SING N N 14 
S08 C8  O1  SING N N 15 
S08 C6  C7  DOUB Y N 16 
S08 N   C1  SING N N 17 
S08 N   C2  SING N N 18 
S08 C15 C14 DOUB Y N 19 
S08 C12 C1  SING N N 20 
S08 C12 C13 DOUB Y N 21 
S08 C3  C2  SING N N 22 
S08 C3  C11 DOUB Y N 23 
S08 O1  B   SING N N 24 
S08 C2  O6  DOUB N N 25 
S08 C7  C11 SING Y N 26 
S08 C7  B   SING N N 27 
S08 C14 C13 SING Y N 28 
S08 N   H1  SING N N 29 
S08 C1  H2  SING N N 30 
S08 C17 H3  SING N N 31 
S08 C16 H4  SING N N 32 
S08 C15 H5  SING N N 33 
S08 C14 H6  SING N N 34 
S08 C13 H7  SING N N 35 
S08 N1  H8  SING N N 36 
S08 N1  H9  SING N N 37 
S08 C11 H10 SING N N 38 
S08 C8  H12 SING N N 39 
S08 C9  H13 SING N N 40 
S08 C9  H14 SING N N 41 
S08 O2  H15 SING N N 42 
S08 C5  H16 SING N N 43 
S08 C4  H17 SING N N 44 
S08 B   O4  SING N N 45 
S08 O4  H11 SING N N 46 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
S08 InChI            InChI                1.03  "InChI=1S/C18H17BN2O6/c20-17(24)16(10-4-2-1-3-5-10)21-18(25)11-6-7-12-13(8-11)19(26)27-14(12)9-15(22)23/h1-8,14,16,26H,9H2,(H2,20,24)(H,21,25)(H,22,23)/t14-,16+/m0/s1" 
S08 InChIKey         InChI                1.03  IKQIDNCBKATNDV-GOEBONIOSA-N                                                                                                                                             
S08 SMILES_CANONICAL CACTVS               3.385 "NC(=O)[C@H](NC(=O)c1ccc2[C@H](CC(O)=O)OB(O)c2c1)c3ccccc3"                                                                                                              
S08 SMILES           CACTVS               3.385 "NC(=O)[CH](NC(=O)c1ccc2[CH](CC(O)=O)OB(O)c2c1)c3ccccc3"                                                                                                                
S08 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "B1(c2cc(ccc2[C@@H](O1)CC(=O)O)C(=O)N[C@H](c3ccccc3)C(=O)N)O"                                                                                                           
S08 SMILES           "OpenEye OEToolkits" 2.0.7 "B1(c2cc(ccc2C(O1)CC(=O)O)C(=O)NC(c3ccccc3)C(=O)N)O"                                                                                                                    
# 
_pdbx_chem_comp_identifier.comp_id           S08 
_pdbx_chem_comp_identifier.type              "SYSTEMATIC NAME" 
_pdbx_chem_comp_identifier.program           "OpenEye OEToolkits" 
_pdbx_chem_comp_identifier.program_version   2.0.7 
_pdbx_chem_comp_identifier.identifier        "2-[(3~{S})-6-[[(1~{R})-2-azanyl-2-oxidanylidene-1-phenyl-ethyl]carbamoyl]-1-oxidanyl-3~{H}-2,1-benzoxaborol-3-yl]ethanoic acid" 
# 
_pdbx_chem_comp_synonyms.ordinal      1 
_pdbx_chem_comp_synonyms.comp_id      S08 
_pdbx_chem_comp_synonyms.name         "2-[(3S)-6-[[(1R)-2-azanyl-2-oxidanylidene-1-phenyl-ethyl]carbamoyl]-1-oxidanyl-3H-2,1-benzoxaborol-3-yl]ethanoic acid" 
_pdbx_chem_comp_synonyms.provenance   PDB 
_pdbx_chem_comp_synonyms.type         ? 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
S08 "Create component" 2020-11-04 PDBE 
S08 "Initial release"  2021-08-11 RCSB 
S08 "Modify PCM"       2024-09-27 PDBE 
# 
_pdbx_chem_comp_pcm.pcm_id                             1 
_pdbx_chem_comp_pcm.comp_id                            S08 
_pdbx_chem_comp_pcm.modified_residue_id                SER 
_pdbx_chem_comp_pcm.type                               None 
_pdbx_chem_comp_pcm.category                           "Covalent chemical modification" 
_pdbx_chem_comp_pcm.position                           "Amino-acid side chain" 
_pdbx_chem_comp_pcm.polypeptide_position               "Any position" 
_pdbx_chem_comp_pcm.comp_id_linking_atom               B 
_pdbx_chem_comp_pcm.modified_residue_id_linking_atom   OG 
_pdbx_chem_comp_pcm.uniprot_specific_ptm_accession     ? 
_pdbx_chem_comp_pcm.uniprot_generic_ptm_accession      ? 
# 
