data_R28
# 
_chem_comp.id                                    R28 
_chem_comp.name                                  "propan-2-yl 2-[[4-[2-(dimethylamino)ethyl-methyl-amino]-2-methoxy-5-(propanoylamino)phenyl]amino]-4-(1-methylindol-3-yl)pyrimidine-5-carboxylate" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C32 H41 N7 O4" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         "Mobocertinib, bound form" 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2020-08-26 
_chem_comp.pdbx_modified_date                    2024-09-27 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        587.712 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     R28 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        7A6K 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  PDBE 
_chem_comp.pdbx_pcm                              Y 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
R28 C10 C1  C 0 1 Y N N N N N 4.623  11.511 26.151 2.964   -0.361 0.306  C10 R28 1  
R28 C15 C2  C 0 1 Y N N N N N 5.229  15.536 27.197 -2.002  0.133  0.140  C15 R28 2  
R28 C20 C3  C 0 1 N N N N N N 9.464  15.045 30.469 -2.644  4.713  2.278  C20 R28 3  
R28 C22 C4  C 0 1 Y N N N N N 5.870  17.710 26.399 -4.252  -0.370 -0.553 C22 R28 4  
R28 C24 C5  C 0 1 N N N N N N 6.701  19.521 25.027 -5.886  -0.154 -2.250 C24 R28 5  
R28 C26 C6  C 0 1 N N N N N N 5.764  20.620 27.457 -7.901  0.036  -0.121 C26 R28 6  
R28 C28 C7  C 0 1 N N N N N N 5.095  22.858 27.787 -10.136 0.105  0.808  C28 R28 7  
R28 C01 C8  C 0 1 N N N N N N 8.810  8.712  26.680 7.291   -0.575 2.808  C01 R28 8  
R28 C03 C9  C 0 1 Y N N N N N 8.330  11.054 25.919 6.308   -1.906 0.906  C03 R28 9  
R28 C04 C10 C 0 1 Y N N N N N 7.216  11.845 25.758 5.109   -1.887 0.175  C04 R28 10 
R28 C05 C11 C 0 1 Y N N N N N 7.365  13.172 25.284 4.900   -2.809 -0.848 C05 R28 11 
R28 C06 C12 C 0 1 Y N N N N N 8.633  13.672 24.982 5.874   -3.739 -1.137 C06 R28 12 
R28 C07 C13 C 0 1 Y N N N N N 9.762  12.865 25.145 7.059   -3.760 -0.416 C07 R28 13 
R28 C08 C14 C 0 1 Y N N N N N 9.621  11.564 25.610 7.277   -2.857 0.602  C08 R28 14 
R28 C09 C15 C 0 1 Y N N N N N 6.100  11.052 26.136 4.309   -0.785 0.738  C09 R28 15 
R28 C12 C16 C 0 1 Y N N N N N 3.147  13.271 26.480 0.704   -0.778 0.095  C12 R28 16 
R28 C14 C17 C 0 1 Y N N N N N 3.955  15.710 26.667 -1.666  -1.207 0.010  C14 R28 17 
R28 C16 C18 C 0 1 Y N N N N N 6.193  16.536 27.059 -3.294  0.553  -0.138 C16 R28 18 
R28 C18 C19 C 0 1 N N N N N N 8.056  15.279 28.385 -3.039  2.660  0.944  C18 R28 19 
R28 C19 C20 C 0 1 N N N N N N 9.448  15.420 28.988 -3.477  4.086  1.158  C19 R28 20 
R28 C25 C21 C 0 1 N N N N N N 6.931  19.631 27.423 -6.530  -0.624 0.036  C25 R28 21 
R28 C29 C22 C 0 1 N N N N N N 7.113  22.080 28.770 -9.098  -2.025 0.309  C29 R28 22 
R28 C30 C23 C 0 1 Y N N N N N 4.597  17.883 25.875 -3.913  -1.709 -0.689 C30 R28 23 
R28 C31 C24 C 0 1 Y N N N N N 3.638  16.885 26.016 -2.624  -2.128 -0.405 C31 R28 24 
R28 C33 C25 C 0 1 N N N N N N 2.047  18.351 25.096 -3.321  -4.330 -0.975 C33 R28 25 
R28 C35 C26 C 0 1 Y N N N N N 2.260  11.228 25.980 1.471   1.245  -0.704 C35 R28 26 
R28 C36 C27 C 0 1 Y N N N N N 3.537  10.666 25.910 2.769   0.899  -0.310 C36 R28 27 
R28 C37 C28 C 0 1 N N N N N N 3.670  9.177  25.574 3.896   1.817  -0.529 C37 R28 28 
R28 C39 C29 C 0 1 N N N N N N 4.514  7.381  24.307 4.869   3.817  -1.399 C39 R28 29 
R28 C40 C30 C 0 1 N N N N N N 5.916  6.779  24.411 5.600   3.428  -2.685 C40 R28 30 
R28 C41 C31 C 0 1 N N N N N N 3.934  7.274  22.900 4.413   5.274  -1.492 C41 R28 31 
R28 C43 C32 C 0 1 Y N N N N N 6.600  9.817  26.528 5.055   -0.236 1.736  C43 R28 32 
R28 N02 N1  N 0 1 Y N N N N N 7.925  9.831  26.384 6.239   -0.895 1.840  N02 R28 33 
R28 N11 N2  N 0 1 Y N N N N N 4.377  12.783 26.433 1.913   -1.157 0.483  N11 R28 34 
R28 N13 N3  N 0 1 N N N N N N 2.922  14.680 26.799 -0.360  -1.633 0.296  N13 R28 35 
R28 N17 N4  N 0 1 N N N N N N 7.539  16.384 27.589 -3.637  1.906  0.000  N17 R28 36 
R28 N23 N5  N 0 1 N N N N N N 6.881  18.754 26.253 -5.558  0.053  -0.834 N23 R28 37 
R28 N27 N6  N 0 1 N N N N N N 6.240  21.984 27.613 -8.872  -0.641 0.749  N27 R28 38 
R28 N34 N7  N 0 1 Y N N N N N 2.094  12.513 26.257 0.484   0.398  -0.481 N34 R28 39 
R28 O21 O1  O 0 1 N N N N N N 7.440  14.281 28.570 -2.149  2.191  1.621  O21 R28 40 
R28 O32 O2  O 0 1 N N N N N N 2.348  17.045 25.496 -2.291  -3.441 -0.539 O32 R28 41 
R28 O38 O3  O 0 1 N N N N N N 4.604  8.741  24.626 3.711   2.958  -1.222 O38 R28 42 
R28 O42 O4  O 0 1 N N N N N N 2.969  8.391  26.116 4.995   1.547  -0.084 O42 R28 43 
R28 H1  H1  H 0 1 N N N N N N 5.474  14.622 27.718 -1.259  0.847  0.462  H1  R28 44 
R28 H2  H2  H 0 1 N N N N N N 10.483 15.160 30.866 -2.960  5.744  2.433  H2  R28 45 
R28 H3  H3  H 0 1 N N N N N N 8.779  15.705 31.022 -2.789  4.146  3.198  H3  R28 46 
R28 H4  H4  H 0 1 N N N N N N 9.141  14.000 30.586 -1.590  4.694  2.002  H4  R28 47 
R28 H5  H5  H 0 1 N N N N N N 7.482  20.293 24.959 -5.803  -1.214 -2.491 H5  R28 48 
R28 H6  H6  H 0 1 N N N N N N 6.774  18.848 24.160 -6.905  0.183  -2.441 H6  R28 49 
R28 H7  H7  H 0 1 N N N N N N 5.711  20.000 25.037 -5.193  0.415  -2.871 H7  R28 50 
R28 H8  H8  H 0 1 N N N N N N 5.199  20.542 26.516 -7.833  1.087  0.160  H8  R28 51 
R28 H9  H9  H 0 1 N N N N N N 5.106  20.370 28.302 -8.226  -0.043 -1.158 H9  R28 52 
R28 H10 H10 H 0 1 N N N N N N 5.440  23.896 27.907 -10.559 0.183  -0.194 H10 R28 53 
R28 H11 H11 H 0 1 N N N N N N 4.443  22.788 26.904 -10.837 -0.419 1.458  H11 R28 54 
R28 H12 H12 H 0 1 N N N N N N 4.534  22.553 28.682 -9.951  1.104  1.203  H12 R28 55 
R28 H13 H13 H 0 1 N N N N N N 8.215  7.858  27.037 7.974   0.156  2.374  H13 R28 56 
R28 H14 H14 H 0 1 N N N N N N 9.354  8.424  25.769 6.841   -0.161 3.711  H14 R28 57 
R28 H15 H15 H 0 1 N N N N N N 9.529  9.009  27.458 7.841   -1.482 3.059  H15 R28 58 
R28 H16 H16 H 0 1 N N N N N N 6.495  13.799 25.156 3.978   -2.796 -1.411 H16 R28 59 
R28 H17 H17 H 0 1 N N N N N N 8.741  14.684 24.622 5.717   -4.453 -1.932 H17 R28 60 
R28 H18 H18 H 0 1 N N N N N N 10.742 13.252 24.910 7.816   -4.494 -0.651 H18 R28 61 
R28 H19 H19 H 0 1 N N N N N N 10.493 10.939 25.737 8.203   -2.881 1.157  H19 R28 62 
R28 H20 H20 H 0 1 N N N N N N 10.140 14.759 28.446 -4.531  4.106  1.434  H20 R28 63 
R28 H21 H21 H 0 1 N N N N N N 9.779  16.464 28.881 -3.332  4.653  0.238  H21 R28 64 
R28 H22 H22 H 0 1 N N N N N N 6.896  19.012 28.331 -6.205  -0.545 1.074  H22 R28 65 
R28 H23 H23 H 0 1 N N N N N N 7.874  20.197 27.401 -6.598  -1.675 -0.245 H23 R28 66 
R28 H24 H24 H 0 1 N N N N N N 7.467  23.116 28.878 -8.157  -2.574 0.342  H24 R28 67 
R28 H25 H25 H 0 1 N N N N N N 6.558  21.786 29.673 -9.821  -2.503 0.970  H25 R28 68 
R28 H26 H26 H 0 1 N N N N N N 7.975  21.410 28.635 -9.483  -2.024 -0.711 H26 R28 69 
R28 H27 H27 H 0 1 N N N N N N 4.349  18.797 25.355 -4.655  -2.424 -1.010 H27 R28 70 
R28 H28 H28 H 0 1 N N N N N N 1.021  18.387 24.702 -3.680  -4.018 -1.956 H28 R28 71 
R28 H29 H29 H 0 1 N N N N N N 2.133  19.028 25.959 -2.924  -5.343 -1.039 H29 R28 72 
R28 H30 H30 H 0 1 N N N N N N 2.752  18.666 24.312 -4.146  -4.308 -0.262 H30 R28 73 
R28 H31 H31 H 0 1 N N N N N N 1.395  10.606 25.806 1.278   2.199  -1.174 H31 R28 74 
R28 H32 H32 H 0 1 N N N N N N 3.848  6.859  25.010 5.541   3.700  -0.549 H32 R28 75 
R28 H33 H33 H 0 1 N N N N N N 6.285  6.883  25.442 5.925   2.389  -2.619 H33 R28 76 
R28 H34 H34 H 0 1 N N N N N N 5.878  5.713  24.141 4.927   3.545  -3.535 H34 R28 77 
R28 H35 H35 H 0 1 N N N N N N 6.594  7.308  23.725 6.469   4.072  -2.818 H35 R28 78 
R28 H36 H36 H 0 1 N N N N N N 2.929  7.720  22.882 3.740   5.391  -2.342 H36 R28 79 
R28 H37 H37 H 0 1 N N N N N N 4.585  7.809  22.193 3.892   5.552  -0.576 H37 R28 80 
R28 H38 H38 H 0 1 N N N N N N 3.870  6.215  22.610 5.282   5.919  -1.625 H38 R28 81 
R28 H39 H39 H 0 1 N N N N N N 6.014  8.985  26.889 4.751   0.598  2.351  H39 R28 82 
R28 H40 H40 H 0 1 N N N N N N 2.017  14.954 27.124 -0.206  -2.528 0.636  H40 R28 83 
R28 H41 H41 H 0 1 N N N N N N 8.182  17.122 27.384 -4.305  2.300  -0.584 H41 R28 84 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
R28 C41 C39 SING N N 1  
R28 C39 C40 SING N N 2  
R28 C39 O38 SING N N 3  
R28 O38 C37 SING N N 4  
R28 C06 C07 DOUB Y N 5  
R28 C06 C05 SING Y N 6  
R28 C24 N23 SING N N 7  
R28 C33 O32 SING N N 8  
R28 C07 C08 SING Y N 9  
R28 C05 C04 DOUB Y N 10 
R28 O32 C31 SING N N 11 
R28 C37 C36 SING N N 12 
R28 C37 O42 DOUB N N 13 
R28 C08 C03 DOUB Y N 14 
R28 C04 C03 SING Y N 15 
R28 C04 C09 SING Y N 16 
R28 C30 C31 DOUB Y N 17 
R28 C30 C22 SING Y N 18 
R28 C36 C35 DOUB Y N 19 
R28 C36 C10 SING Y N 20 
R28 C03 N02 SING Y N 21 
R28 C35 N34 SING Y N 22 
R28 C31 C14 SING Y N 23 
R28 C09 C10 SING N N 24 
R28 C09 C43 DOUB Y N 25 
R28 C10 N11 DOUB Y N 26 
R28 N23 C22 SING N N 27 
R28 N23 C25 SING N N 28 
R28 N34 C12 DOUB Y N 29 
R28 N02 C43 SING Y N 30 
R28 N02 C01 SING N N 31 
R28 C22 C16 DOUB Y N 32 
R28 N11 C12 SING Y N 33 
R28 C12 N13 SING N N 34 
R28 C14 N13 SING N N 35 
R28 C14 C15 DOUB Y N 36 
R28 C16 C15 SING Y N 37 
R28 C16 N17 SING N N 38 
R28 C25 C26 SING N N 39 
R28 C26 N27 SING N N 40 
R28 N17 C18 SING N N 41 
R28 N27 C28 SING N N 42 
R28 N27 C29 SING N N 43 
R28 C18 O21 DOUB N N 44 
R28 C18 C19 SING N N 45 
R28 C19 C20 SING N N 46 
R28 C15 H1  SING N N 47 
R28 C20 H2  SING N N 48 
R28 C20 H3  SING N N 49 
R28 C20 H4  SING N N 50 
R28 C24 H5  SING N N 51 
R28 C24 H6  SING N N 52 
R28 C24 H7  SING N N 53 
R28 C26 H8  SING N N 54 
R28 C26 H9  SING N N 55 
R28 C28 H10 SING N N 56 
R28 C28 H11 SING N N 57 
R28 C28 H12 SING N N 58 
R28 C01 H13 SING N N 59 
R28 C01 H14 SING N N 60 
R28 C01 H15 SING N N 61 
R28 C05 H16 SING N N 62 
R28 C06 H17 SING N N 63 
R28 C07 H18 SING N N 64 
R28 C08 H19 SING N N 65 
R28 C19 H20 SING N N 66 
R28 C19 H21 SING N N 67 
R28 C25 H22 SING N N 68 
R28 C25 H23 SING N N 69 
R28 C29 H24 SING N N 70 
R28 C29 H25 SING N N 71 
R28 C29 H26 SING N N 72 
R28 C30 H27 SING N N 73 
R28 C33 H28 SING N N 74 
R28 C33 H29 SING N N 75 
R28 C33 H30 SING N N 76 
R28 C35 H31 SING N N 77 
R28 C39 H32 SING N N 78 
R28 C40 H33 SING N N 79 
R28 C40 H34 SING N N 80 
R28 C40 H35 SING N N 81 
R28 C41 H36 SING N N 82 
R28 C41 H37 SING N N 83 
R28 C41 H38 SING N N 84 
R28 C43 H39 SING N N 85 
R28 N13 H40 SING N N 86 
R28 N17 H41 SING N N 87 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
R28 InChI            InChI                1.06    "InChI=1S/C32H41N7O4/c1-9-29(40)34-24-16-25(28(42-8)17-27(24)38(6)15-14-37(4)5)35-32-33-18-22(31(41)43-20(2)3)30(36-32)23-19-39(7)26-13-11-10-12-21(23)26/h10-13,16-20H,9,14-15H2,1-8H3,(H,34,40)(H,33,35,36)" 
R28 InChIKey         InChI                1.06    CINKQTDSFCVDKO-UHFFFAOYSA-N                                                                                                                                                                                    
R28 SMILES_CANONICAL CACTVS               3.385   "CCC(=O)Nc1cc(Nc2ncc(C(=O)OC(C)C)c(n2)c3cn(C)c4ccccc34)c(OC)cc1N(C)CCN(C)C"                                                                                                                                    
R28 SMILES           CACTVS               3.385   "CCC(=O)Nc1cc(Nc2ncc(C(=O)OC(C)C)c(n2)c3cn(C)c4ccccc34)c(OC)cc1N(C)CCN(C)C"                                                                                                                                    
R28 SMILES_CANONICAL "OpenEye OEToolkits" 3.1.0.0 "CCC(=O)Nc1cc(c(cc1N(C)CCN(C)C)OC)Nc2ncc(c(n2)c3cn(c4c3cccc4)C)C(=O)OC(C)C"                                                                                                                                    
R28 SMILES           "OpenEye OEToolkits" 3.1.0.0 "CCC(=O)Nc1cc(c(cc1N(C)CCN(C)C)OC)Nc2ncc(c(n2)c3cn(c4c3cccc4)C)C(=O)OC(C)C"                                                                                                                                    
# 
_pdbx_chem_comp_identifier.comp_id           R28 
_pdbx_chem_comp_identifier.type              "SYSTEMATIC NAME" 
_pdbx_chem_comp_identifier.program           "OpenEye OEToolkits" 
_pdbx_chem_comp_identifier.program_version   3.1.0.0 
_pdbx_chem_comp_identifier.identifier        "propan-2-yl 2-[[4-[2-(dimethylamino)ethyl-methyl-amino]-2-methoxy-5-(propanoylamino)phenyl]amino]-4-(1-methylindol-3-yl)pyrimidine-5-carboxylate" 
# 
_pdbx_chem_comp_synonyms.ordinal      1 
_pdbx_chem_comp_synonyms.comp_id      R28 
_pdbx_chem_comp_synonyms.name         "Mobocertinib, bound form" 
_pdbx_chem_comp_synonyms.provenance   ? 
_pdbx_chem_comp_synonyms.type         ? 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
R28 "Create component" 2020-08-26 PDBE 
R28 "Initial release"  2022-02-23 RCSB 
R28 "Modify synonyms"  2022-09-28 PDBE 
R28 "Modify PCM"       2024-09-27 PDBE 
# 
_pdbx_chem_comp_pcm.pcm_id                             1 
_pdbx_chem_comp_pcm.comp_id                            R28 
_pdbx_chem_comp_pcm.modified_residue_id                CYS 
_pdbx_chem_comp_pcm.type                               None 
_pdbx_chem_comp_pcm.category                           "Covalent chemical modification" 
_pdbx_chem_comp_pcm.position                           "Amino-acid side chain" 
_pdbx_chem_comp_pcm.polypeptide_position               "Any position" 
_pdbx_chem_comp_pcm.comp_id_linking_atom               C20 
_pdbx_chem_comp_pcm.modified_residue_id_linking_atom   SG 
_pdbx_chem_comp_pcm.uniprot_specific_ptm_accession     ? 
_pdbx_chem_comp_pcm.uniprot_generic_ptm_accession      ? 
# 
