data_ME8
#

_chem_comp.id                                   ME8
_chem_comp.name                                 
;[[(2R,3S,4R,5R)-5-(6-aminopurin-9-yl)-3,4-dihydroxy-oxolan-2-yl]methoxy-hydroxy-phosphoryl]
(2S)-2-azanyl-4-methylsulfanyl-butanoate
;

_chem_comp.type                                 NON-POLYMER
_chem_comp.pdbx_type                            HETAIN
_chem_comp.formula                              "C15 H23 N6 O8 P S"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        "L-methionine-AMP; methionyl-adenylate"
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2009-10-30
_chem_comp.pdbx_modified_date                   2020-06-17
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       478.417
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    ME8
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       3KFL
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 RCSB
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
ME8  O       O       O  0  1  N  N  N  30.609  45.685   -7.969   4.896  -1.750  -1.197  O       ME8   1  
ME8  N1      N1      N  0  1  Y  N  N  38.757  46.833   -0.978  -7.005   2.818   0.282  N1      ME8   2  
ME8  O1      O1      O  0  1  N  N  N  31.305  43.558   -8.553   3.386  -1.164   0.307  O1      ME8   3  
ME8  P1      P1      P  0  1  N  N  N  32.918  43.852   -8.463   2.330  -2.130  -0.430  P1      ME8   4  
ME8  C2      C2      C  0  1  Y  N  N  37.670  46.290   -0.298  -6.963   1.726   1.023  C2      ME8   5  
ME8  N2      N2      N  0  1  N  N  N  29.161  42.838   -9.561   7.001  -0.658  -0.000  N2      ME8   6  
ME8  N3      N3      N  0  1  Y  N  N  36.636  45.706   -1.021  -5.933   0.907   1.016  N3      ME8   7  
ME8  C4      C4      C  0  1  Y  N  N  36.913  45.392   -2.404  -4.877   1.152   0.247  C4      ME8   8  
ME8  C5      C5      C  0  1  Y  N  N  37.899  46.194   -3.126  -4.873   2.302  -0.561  C5      ME8   9  
ME8  C6      C6      C  0  1  Y  N  N  38.902  46.773   -2.359  -5.996   3.146  -0.519  C6      ME8  10  
ME8  N6      N6      N  0  1  N  N  N  39.960  47.333   -2.899  -6.049   4.292  -1.292  N6      ME8  11  
ME8  N7      N7      N  0  1  Y  N  N  37.684  45.879   -4.404  -3.697   2.313  -1.233  N7      ME8  12  
ME8  C8      C8      C  0  1  Y  N  N  36.535  45.184   -4.538  -2.995   1.270  -0.896  C8      ME8  13  
ME8  C9      C9      C  0  1  N  N  N  30.394  44.560   -8.411   4.621  -1.100  -0.216  C9      ME8  14  
ME8  N9      N9      N  0  1  Y  N  N  35.913  45.042   -3.363  -3.680   0.522   0.014  N9      ME8  15  
ME8  CA      CA      C  0  1  N  N  S  28.999  44.083   -8.763   5.664  -0.217   0.419  CA      ME8  16  
ME8  CB      CB      C  0  1  N  N  N  28.280  43.794   -7.455   5.443   1.231  -0.022  CB      ME8  17  
ME8  SD      SD      S  0  1  N  N  N  26.114  42.906   -6.018   6.161   3.862   0.196  SD      ME8  18  
ME8  CE      CE      C  0  1  N  N  N  24.450  42.466   -6.464   7.391   4.776   1.166  CE      ME8  19  
ME8  CG      CG      C  0  1  N  N  N  26.844  43.337   -7.636   6.422   2.145   0.719  CG      ME8  20  
ME8  "C1'"   "C1'"   C  0  1  N  N  R  34.740  44.240   -3.004  -3.223  -0.725   0.632  "C1'"   ME8  21  
ME8  O1S     O1S     O  0  1  N  N  N  33.493  42.669   -9.108   2.237  -1.760  -1.860  O1S     ME8  22  
ME8  "C2'"   "C2'"   C  0  1  N  N  R  33.692  45.144   -2.383  -3.766  -1.950  -0.146  "C2'"   ME8  23  
ME8  "O2'"   "O2'"   O  0  1  N  N  N  32.704  44.296   -1.800  -5.067  -2.313   0.319  "O2'"   ME8  24  
ME8  O2S     O2S     O  0  1  N  N  N  33.315  45.206   -8.943   2.820  -3.658  -0.302  O2S     ME8  25  
ME8  "C3'"   "C3'"   C  0  1  N  N  S  33.167  45.812   -3.650  -2.728  -3.044   0.207  "C3'"   ME8  26  
ME8  "O3'"   "O3'"   O  0  1  N  N  N  31.889  46.349   -3.438  -3.209  -3.865   1.273  "O3'"   ME8  27  
ME8  "C4'"   "C4'"   C  0  1  N  N  R  33.022  44.586   -4.566  -1.483  -2.253   0.654  "C4'"   ME8  28  
ME8  "O4'"   "O4'"   O  0  1  N  N  N  34.164  43.758   -4.241  -1.790  -0.856   0.510  "O4'"   ME8  29  
ME8  "C5'"   "C5'"   C  0  1  N  N  N  33.056  44.945   -6.070  -0.290  -2.618  -0.232  "C5'"   ME8  30  
ME8  "O5'"   "O5'"   O  0  1  N  N  N  33.199  43.757   -6.862   0.884  -1.970   0.261  "O5'"   ME8  31  
ME8  H2      H2      H  0  1  N  N  N  37.630  46.322    0.781  -7.805   1.497   1.660  H2      ME8  32  
ME8  HN2     HN2     H  0  1  N  N  N  28.261  42.486   -9.817   7.101  -0.607  -1.003  HN2     ME8  33  
ME8  HN2A    HN2A    H  0  0  N  N  N  29.688  43.038  -10.387   7.720  -0.123   0.463  HN2A    ME8  34  
ME8  HN6     HN6     H  0  1  N  N  N  40.526  47.738   -2.181  -5.306   4.521  -1.872  HN6     ME8  35  
ME8  HN6A    HN6A    H  0  0  N  N  N  40.489  46.641   -3.390  -6.830   4.867  -1.254  HN6A    ME8  36  
ME8  HA      HA      H  0  1  N  N  N  28.422  44.821   -9.339   5.583  -0.283   1.504  HA      ME8  37  
ME8  HB      HB      H  0  1  N  N  N  28.829  42.997   -6.933   5.611   1.314  -1.096  HB      ME8  38  
ME8  HBA     HBA     H  0  1  N  N  N  28.272  44.718   -6.859   4.421   1.530   0.210  HBA     ME8  39  
ME8  HE      HE      H  0  1  N  N  N  23.891  42.180   -5.561   7.199   4.628   2.229  HE      ME8  40  
ME8  HEA     HEA     H  0  1  N  N  N  23.959  43.327   -6.942   8.389   4.411   0.923  HEA     ME8  41  
ME8  HEB     HEB     H  0  1  N  N  N  24.470  41.619   -7.166   7.325   5.838   0.930  HEB     ME8  42  
ME8  HG      HG      H  0  1  N  N  N  26.260  44.149   -8.093   6.254   2.062   1.793  HG      ME8  43  
ME8  HGA     HGA     H  0  1  N  N  N  26.824  42.453   -8.290   7.444   1.846   0.487  HGA     ME8  44  
ME8  "H1'"   "H1'"   H  0  1  N  N  N  35.028  43.432   -2.315  -3.527  -0.768   1.678  "H1'"   ME8  45  
ME8  "H2'"   "H2'"   H  0  1  N  N  N  34.016  45.849   -1.604  -3.778  -1.756  -1.218  "H2'"   ME8  46  
ME8  "HO2'"  "HO2'"  H  0  0  N  N  N  32.027  44.828   -1.399  -5.450  -3.075  -0.137  "HO2'"  ME8  47  
ME8  HO2S    HO2S    H  0  0  N  N  N  33.935  45.120   -9.658   2.903  -3.969   0.610  HO2S    ME8  48  
ME8  "H3'"   "H3'"   H  0  1  N  N  N  33.802  46.630   -4.020  -2.502  -3.652  -0.669  "H3'"   ME8  49  
ME8  "HO3'"  "HO3'"  H  0  0  N  N  N  31.581  46.759   -4.237  -4.025  -4.340   1.066  "HO3'"  ME8  50  
ME8  "H4'"   "H4'"   H  0  1  N  N  N  32.051  44.095   -4.403  -1.256  -2.478   1.696  "H4'"   ME8  51  
ME8  "H5'"   "H5'"   H  0  1  N  N  N  32.118  45.451   -6.343  -0.143  -3.697  -0.217  "H5'"   ME8  52  
ME8  "H5'A"  "H5'A"  H  0  0  N  N  N  33.908  45.613   -6.263  -0.483  -2.291  -1.254  "H5'A"  ME8  53  
ME8  H8      H8      H  0  1  N  N  N  36.165  44.793   -5.474  -2.015   1.032  -1.283  H8      ME8  54  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
ME8  N1     C2      SING  Y  N   1  
ME8  O1     P1      SING  N  N   2  
ME8  O1     C9      SING  N  N   3  
ME8  P1     "O5'"   SING  N  N   4  
ME8  C2     H2      SING  N  N   5  
ME8  N2     CA      SING  N  N   6  
ME8  N2     HN2     SING  N  N   7  
ME8  N2     HN2A    SING  N  N   8  
ME8  N3     C2      DOUB  Y  N   9  
ME8  C4     N3      SING  Y  N  10  
ME8  C5     C4      DOUB  Y  N  11  
ME8  C5     C6      SING  Y  N  12  
ME8  C6     N1      DOUB  Y  N  13  
ME8  N6     C6      SING  N  N  14  
ME8  N6     HN6     SING  N  N  15  
ME8  N6     HN6A    SING  N  N  16  
ME8  N7     C5      SING  Y  N  17  
ME8  C8     N7      DOUB  Y  N  18  
ME8  C8     N9      SING  Y  N  19  
ME8  C9     O       DOUB  N  N  20  
ME8  N9     C4      SING  Y  N  21  
ME8  N9     "C1'"   SING  N  N  22  
ME8  CA     C9      SING  N  N  23  
ME8  CA     CB      SING  N  N  24  
ME8  CA     HA      SING  N  N  25  
ME8  CB     HB      SING  N  N  26  
ME8  CB     HBA     SING  N  N  27  
ME8  CE     SD      SING  N  N  28  
ME8  CE     HE      SING  N  N  29  
ME8  CE     HEA     SING  N  N  30  
ME8  CE     HEB     SING  N  N  31  
ME8  CG     CB      SING  N  N  32  
ME8  CG     SD      SING  N  N  33  
ME8  CG     HG      SING  N  N  34  
ME8  CG     HGA     SING  N  N  35  
ME8  "C1'"  "C2'"   SING  N  N  36  
ME8  "C1'"  "H1'"   SING  N  N  37  
ME8  O1S    P1      DOUB  N  N  38  
ME8  "C2'"  "O2'"   SING  N  N  39  
ME8  "C2'"  "H2'"   SING  N  N  40  
ME8  "O2'"  "HO2'"  SING  N  N  41  
ME8  O2S    P1      SING  N  N  42  
ME8  O2S    HO2S    SING  N  N  43  
ME8  "C3'"  "C2'"   SING  N  N  44  
ME8  "C3'"  "O3'"   SING  N  N  45  
ME8  "C3'"  "H3'"   SING  N  N  46  
ME8  "O3'"  "HO3'"  SING  N  N  47  
ME8  "C4'"  "C3'"   SING  N  N  48  
ME8  "C4'"  "O4'"   SING  N  N  49  
ME8  "C4'"  "H4'"   SING  N  N  50  
ME8  "O4'"  "C1'"   SING  N  N  51  
ME8  "C5'"  "C4'"   SING  N  N  52  
ME8  "C5'"  "H5'"   SING  N  N  53  
ME8  "C5'"  "H5'A"  SING  N  N  54  
ME8  "O5'"  "C5'"   SING  N  N  55  
ME8  C8     H8      SING  N  N  56  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
ME8  SMILES            ACDLabs               11.02  "O=P(OC(=O)C(N)CCSC)(O)OCC3OC(n2cnc1c(ncnc12)N)C(O)C3O"  
ME8  SMILES_CANONICAL  CACTVS                3.352  "CSCC[C@H](N)C(=O)O[P](O)(=O)OC[C@H]1O[C@H]([C@H](O)[C@@H]1O)n2cnc3c(N)ncnc23"  
ME8  SMILES            CACTVS                3.352  "CSCC[CH](N)C(=O)O[P](O)(=O)OC[CH]1O[CH]([CH](O)[CH]1O)n2cnc3c(N)ncnc23"  
ME8  SMILES_CANONICAL  "OpenEye OEToolkits"  1.7.0  "CSCC[C@@H](C(=O)O[P@@](=O)(O)OC[C@@H]1[C@H]([C@H]([C@@H](O1)n2cnc3c2ncnc3N)O)O)N"  
ME8  SMILES            "OpenEye OEToolkits"  1.7.0  "CSCCC(C(=O)OP(=O)(O)OCC1C(C(C(O1)n2cnc3c2ncnc3N)O)O)N"  
ME8  InChI             InChI                 1.03   "InChI=1S/C15H23N6O8PS/c1-31-3-2-7(16)15(24)29-30(25,26)27-4-8-10(22)11(23)14(28-8)21-6-20-9-12(17)18-5-19-13(9)21/h5-8,10-11,14,22-23H,2-4,16H2,1H3,(H,25,26)(H2,17,18,19)/t7-,8+,10+,11+,14+/m0/s1"  
ME8  InChIKey          InChI                 1.03   RZQLXQQLNKBFRX-TWBCTODHSA-N  
#   #
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
ME8  "SYSTEMATIC NAME"  ACDLabs               11.02  "5'-O-[(S)-{[(2S)-2-amino-4-(methylsulfanyl)butanoyl]oxy}(hydroxy)phosphoryl]adenosine"  
ME8  "SYSTEMATIC NAME"  "OpenEye OEToolkits"  1.6.1  "[[(2R,3S,4R,5R)-5-(6-aminopurin-9-yl)-3,4-dihydroxy-oxolan-2-yl]methoxy-hydroxy-phosphoryl] (2S)-2-azanyl-4-methylsulfanyl-butanoate"  
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
ME8  "Create component"      2009-10-30  RCSB  
ME8  "Modify aromatic_flag"  2011-06-04  RCSB  
ME8  "Modify descriptor"     2011-06-04  RCSB  
ME8  "Modify synonyms"       2020-06-05  PDBE  
#   #
loop_
_pdbx_chem_comp_synonyms.ordinal
_pdbx_chem_comp_synonyms.comp_id
_pdbx_chem_comp_synonyms.name
_pdbx_chem_comp_synonyms.provenance
_pdbx_chem_comp_synonyms.type
1  ME8  L-methionine-AMP     ?  ?  
2  ME8  methionyl-adenylate  ?  ?  
##
