data_MD8
#

_chem_comp.id                                   MD8
_chem_comp.name                                 "(2~{S})-1-[(2~{R})-2-azanyl-3-phenyl-propanoyl]-~{N}-[(4-hydroxyphenyl)methyl]pyrrolidine-2-carboxamide"
_chem_comp.type                                 non-polymer
_chem_comp.pdbx_type                            HETAIN
_chem_comp.formula                              "C21 H25 N3 O3"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        ?
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2019-10-11
_chem_comp.pdbx_modified_date                   2020-11-13
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       367.442
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    MD8
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       6T3M
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 EBI
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
MD8  N    N1   N  0  1  N  N  N  75.305  -16.699  92.953  -1.027   0.604  -0.317  N    MD8   1  
MD8  C    C1   C  0  1  Y  N  N  79.192  -16.774  96.216  -8.074   0.056   0.390  C    MD8   2  
MD8  O    O1   O  0  1  N  N  N  73.558  -16.451  94.328  -1.113  -1.609  -0.446  O    MD8   3  
MD8  C1   C2   C  0  1  Y  N  N  78.129  -16.106  96.790  -7.262   1.175   0.390  C1   MD8   4  
MD8  C10  C3   C  0  1  N  N  N  77.195  -16.232  91.668  -0.368   2.829   0.283  C10  MD8   5  
MD8  C11  C4   C  0  1  N  N  N  76.088  -15.299  91.224   0.693   2.273  -0.701  C11  MD8   6  
MD8  C12  C5   C  0  1  N  N  S  75.044  -15.384  92.345   0.373   0.763  -0.738  C12  MD8   7  
MD8  C13  C6   C  0  1  N  N  N  73.636  -15.344  91.755   1.281   0.023   0.210  C13  MD8   8  
MD8  C14  C7   C  0  1  N  N  N  71.559  -14.053  91.470   3.498  -0.673   0.944  C14  MD8   9  
MD8  C15  C8   C  0  1  Y  N  N  70.566  -13.809  92.581   4.930  -0.488   0.514  C15  MD8  10  
MD8  C16  C9   C  0  1  Y  N  N  70.649  -12.664  93.359   5.505  -1.379  -0.374  C16  MD8  11  
MD8  C17  C10  C  0  1  Y  N  N  69.796  -12.457  94.427   6.818  -1.212  -0.768  C17  MD8  12  
MD8  C18  C11  C  0  1  Y  N  N  68.823  -13.396  94.731   7.560  -0.150  -0.274  C18  MD8  13  
MD8  C19  C12  C  0  1  Y  N  N  68.709  -14.537  93.944   6.982   0.742   0.617  C19  MD8  14  
MD8  C2   C13  C  0  1  Y  N  N  76.855  -16.639  96.728  -5.952   1.078  -0.041  C2   MD8  15  
MD8  C20  C14  C  0  1  Y  N  N  69.575  -14.736  92.884   5.666   0.575   1.004  C20  MD8  16  
MD8  C3   C15  C  0  1  Y  N  N  76.622  -17.846  96.086  -5.454  -0.137  -0.471  C3   MD8  17  
MD8  C4   C16  C  0  1  Y  N  N  77.700  -18.509  95.514  -6.266  -1.256  -0.471  C4   MD8  18  
MD8  C5   C17  C  0  1  Y  N  N  78.976  -17.977  95.583  -7.574  -1.161  -0.036  C5   MD8  19  
MD8  C6   C18  C  0  1  N  N  N  75.225  -18.405  95.976  -4.026  -0.243  -0.940  C6   MD8  20  
MD8  C7   C19  C  0  1  N  N  R  74.706  -18.547  94.529  -3.122  -0.583   0.247  C7   MD8  21  
MD8  C8   C20  C  0  1  N  N  N  74.481  -17.138  93.922  -1.682  -0.567  -0.197  C8   MD8  22  
MD8  C9   C21  C  0  1  N  N  N  76.466  -17.371  92.346  -1.592   1.938  -0.042  C9   MD8  23  
MD8  N1   N2   N  0  1  N  N  N  72.933  -14.215  91.941   2.615   0.047   0.022  N1   MD8  24  
MD8  N2   N3   N  0  1  N  N  N  73.403  -19.240  94.544  -3.464  -1.918   0.756  N2   MD8  25  
MD8  O1   O2   O  0  1  N  N  N  73.203  -16.319  91.138   0.811  -0.593   1.143  O1   MD8  26  
MD8  O2   O3   O  0  1  N  N  N  68.004  -13.175  95.805   8.853   0.015  -0.660  O2   MD8  27  
MD8  H1   H1   H  0  1  N  N  N  80.186  -16.355  96.263  -9.098   0.131   0.726  H1   MD8  28  
MD8  H2   H2   H  0  1  N  N  N  78.293  -15.163  97.290  -7.651   2.124   0.726  H2   MD8  29  
MD8  H3   H3   H  0  1  N  N  N  77.770  -16.596  90.803  -0.048   2.692   1.316  H3   MD8  30  
MD8  H4   H4   H  0  1  N  N  N  77.872  -15.727  92.373  -0.582   3.877   0.077  H4   MD8  31  
MD8  H5   H5   H  0  1  N  N  N  76.464  -14.271  91.120   0.573   2.717  -1.689  H5   MD8  32  
MD8  H6   H6   H  0  1  N  N  N  75.659  -15.631  90.267   1.700   2.444  -0.320  H6   MD8  33  
MD8  H7   H7   H  0  1  N  N  N  75.186  -14.569  93.070   0.501   0.382  -1.751  H7   MD8  34  
MD8  H8   H8   H  0  1  N  N  N  71.526  -13.197  90.780   3.248  -1.734   0.932  H8   MD8  35  
MD8  H9   H9   H  0  1  N  N  N  71.264  -14.968  90.934   3.367  -0.280   1.952  H9   MD8  36  
MD8  H10  H10  H  0  1  N  N  N  71.395  -11.919  93.126   4.926  -2.206  -0.758  H10  MD8  37  
MD8  H11  H11  H  0  1  N  N  N  69.888  -11.563  95.025   7.266  -1.909  -1.462  H11  MD8  38  
MD8  H12  H12  H  0  1  N  N  N  67.944  -15.268  94.161   7.558   1.570   1.003  H12  MD8  39  
MD8  H13  H13  H  0  1  N  N  N  76.032  -16.110  97.185  -5.318   1.952  -0.041  H13  MD8  40  
MD8  H14  H14  H  0  1  N  N  N  69.480  -15.627  92.281   5.214   1.272   1.694  H14  MD8  41  
MD8  H15  H15  H  0  1  N  N  N  77.541  -19.451  95.010  -5.875  -2.207  -0.803  H15  MD8  42  
MD8  H16  H16  H  0  1  N  N  N  79.805  -18.508  95.139  -8.208  -2.035  -0.036  H16  MD8  43  
MD8  H17  H17  H  0  1  N  N  N  74.543  -17.736  96.522  -3.947  -1.027  -1.693  H17  MD8  44  
MD8  H18  H18  H  0  1  N  N  N  75.215  -19.400  96.444  -3.714   0.708  -1.373  H18  MD8  45  
MD8  H19  H19  H  0  1  N  N  N  75.437  -19.101  93.922  -3.267   0.155   1.036  H19  MD8  46  
MD8  H20  H20  H  0  1  N  N  N  76.148  -18.129  91.615  -2.114   2.316  -0.921  H20  MD8  47  
MD8  H21  H21  H  0  1  N  N  N  77.096  -17.844  93.114  -2.268   1.896   0.812  H21  MD8  48  
MD8  H22  H22  H  0  1  N  N  N  73.368  -13.453  92.422   2.991   0.540  -0.724  H22  MD8  49  
MD8  H23  H23  H  0  1  N  N  N  73.516  -20.155  94.932  -4.405  -1.936   1.119  H23  MD8  50  
MD8  H24  H24  H  0  1  N  N  N  72.755  -18.720  95.101  -3.338  -2.620   0.042  H24  MD8  51  
MD8  H26  H26  H  0  1  N  N  N  68.233  -12.349  96.214   8.960   0.565  -1.449  H26  MD8  52  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
MD8  O1   C13  DOUB  N  N   1  
MD8  C11  C10  SING  N  N   2  
MD8  C11  C12  SING  N  N   3  
MD8  C14  N1   SING  N  N   4  
MD8  C14  C15  SING  N  N   5  
MD8  C10  C9   SING  N  N   6  
MD8  C13  N1   SING  N  N   7  
MD8  C13  C12  SING  N  N   8  
MD8  C12  N    SING  N  N   9  
MD8  C9   N    SING  N  N  10  
MD8  C15  C20  DOUB  Y  N  11  
MD8  C15  C16  SING  Y  N  12  
MD8  C20  C19  SING  Y  N  13  
MD8  N    C8   SING  N  N  14  
MD8  C16  C17  DOUB  Y  N  15  
MD8  C8   O    DOUB  N  N  16  
MD8  C8   C7   SING  N  N  17  
MD8  C19  C18  DOUB  Y  N  18  
MD8  C17  C18  SING  Y  N  19  
MD8  C7   N2   SING  N  N  20  
MD8  C7   C6   SING  N  N  21  
MD8  C18  O2   SING  N  N  22  
MD8  C4   C5   DOUB  Y  N  23  
MD8  C4   C3   SING  Y  N  24  
MD8  C5   C    SING  Y  N  25  
MD8  C6   C3   SING  N  N  26  
MD8  C3   C2   DOUB  Y  N  27  
MD8  C    C1   DOUB  Y  N  28  
MD8  C2   C1   SING  Y  N  29  
MD8  C    H1   SING  N  N  30  
MD8  C1   H2   SING  N  N  31  
MD8  C10  H3   SING  N  N  32  
MD8  C10  H4   SING  N  N  33  
MD8  C11  H5   SING  N  N  34  
MD8  C11  H6   SING  N  N  35  
MD8  C12  H7   SING  N  N  36  
MD8  C14  H8   SING  N  N  37  
MD8  C14  H9   SING  N  N  38  
MD8  C16  H10  SING  N  N  39  
MD8  C17  H11  SING  N  N  40  
MD8  C19  H12  SING  N  N  41  
MD8  C2   H13  SING  N  N  42  
MD8  C20  H14  SING  N  N  43  
MD8  C4   H15  SING  N  N  44  
MD8  C5   H16  SING  N  N  45  
MD8  C6   H17  SING  N  N  46  
MD8  C6   H18  SING  N  N  47  
MD8  C7   H19  SING  N  N  48  
MD8  C9   H20  SING  N  N  49  
MD8  C9   H21  SING  N  N  50  
MD8  N1   H22  SING  N  N  51  
MD8  N2   H23  SING  N  N  52  
MD8  N2   H24  SING  N  N  53  
MD8  O2   H26  SING  N  N  54  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
MD8  InChI             InChI                 1.03   "InChI=1S/C21H25N3O3/c22-18(13-15-5-2-1-3-6-15)21(27)24-12-4-7-19(24)20(26)23-14-16-8-10-17(25)11-9-16/h1-3,5-6,8-11,18-19,25H,4,7,12-14,22H2,(H,23,26)/t18-,19+/m1/s1"  
MD8  InChIKey          InChI                 1.03   FQTMKKZTHOHYNU-MOPGFXCFSA-N  
MD8  SMILES_CANONICAL  CACTVS                3.385  "N[C@H](Cc1ccccc1)C(=O)N2CCC[C@H]2C(=O)NCc3ccc(O)cc3"  
MD8  SMILES            CACTVS                3.385  "N[CH](Cc1ccccc1)C(=O)N2CCC[CH]2C(=O)NCc3ccc(O)cc3"  
MD8  SMILES_CANONICAL  "OpenEye OEToolkits"  2.0.7  "c1ccc(cc1)C[C@H](C(=O)N2CCC[C@H]2C(=O)NCc3ccc(cc3)O)N"  
MD8  SMILES            "OpenEye OEToolkits"  2.0.7  "c1ccc(cc1)CC(C(=O)N2CCCC2C(=O)NCc3ccc(cc3)O)N"  
#
_pdbx_chem_comp_identifier.comp_id          MD8
_pdbx_chem_comp_identifier.type             "SYSTEMATIC NAME"
_pdbx_chem_comp_identifier.program          "OpenEye OEToolkits"
_pdbx_chem_comp_identifier.program_version  2.0.7
_pdbx_chem_comp_identifier.identifier       "(2~{S})-1-[(2~{R})-2-azanyl-3-phenyl-propanoyl]-~{N}-[(4-hydroxyphenyl)methyl]pyrrolidine-2-carboxamide"
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
MD8  "Create component"  2019-10-11  EBI   
MD8  "Initial release"   2020-11-18  RCSB  
##
