data_MA8
#

_chem_comp.id                                   MA8
_chem_comp.name                                 "(1S,2R,3R,4S,5S,6R)-2,3,4,5,6-pentahydroxycyclohexyl 2-(L-cysteinylamino)-2-deoxy-alpha-D-glucopyranoside"
_chem_comp.type                                 D-saccharide
_chem_comp.pdbx_type                            ATOMS
_chem_comp.formula                              "C15 H28 N2 O11 S"
_chem_comp.mon_nstd_parent_comp_id              NDG
_chem_comp.pdbx_synonyms                        
;(2S,3R,5S,6S)-2,3,4,5,6-PENTAHYDROXYCYCLOHEXYL 2-(L-CYSTEINYLAMINO)-2-DEOXY-ALPHA-L-GLUCOPYRANOSIDE;
(1S,2R,3R,4S,5S,6R)-2,3,4,5,6-pentahydroxycyclohexyl 2-(L-cysteinylamino)-2-deoxy-alpha-D-glucoside;
(1S,2R,3R,4S,5S,6R)-2,3,4,5,6-pentahydroxycyclohexyl 2-(L-cysteinylamino)-2-deoxy-D-glucoside;
(1S,2R,3R,4S,5S,6R)-2,3,4,5,6-pentahydroxycyclohexyl 2-(L-cysteinylamino)-2-deoxy-glucoside
;

_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2005-09-26
_chem_comp.pdbx_modified_date                   2020-07-17
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       444.455
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    MA8
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       "OpenEye/OEToolkits V1.4.2"
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       2C27
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 EBI
#   #
loop_
_pdbx_chem_comp_synonyms.ordinal
_pdbx_chem_comp_synonyms.comp_id
_pdbx_chem_comp_synonyms.name
_pdbx_chem_comp_synonyms.provenance
_pdbx_chem_comp_synonyms.type
1  MA8  "(2S,3R,5S,6S)-2,3,4,5,6-PENTAHYDROXYCYCLOHEXYL 2-(L-CYSTEINYLAMINO)-2-DEOXY-ALPHA-L-GLUCOPYRANOSIDE"  PDB  ?  
2  MA8  "(1S,2R,3R,4S,5S,6R)-2,3,4,5,6-pentahydroxycyclohexyl 2-(L-cysteinylamino)-2-deoxy-alpha-D-glucoside"  PDB  ?  
3  MA8  "(1S,2R,3R,4S,5S,6R)-2,3,4,5,6-pentahydroxycyclohexyl 2-(L-cysteinylamino)-2-deoxy-D-glucoside"        PDB  ?  
4  MA8  "(1S,2R,3R,4S,5S,6R)-2,3,4,5,6-pentahydroxycyclohexyl 2-(L-cysteinylamino)-2-deoxy-glucoside"          PDB  ?  
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
MA8  O5    O1    O  0  1  N  N  N  4.148   5.088  16.141  -0.556  -1.799  -1.384  O5    MA8   1  
MA8  C1    C1    C  0  1  N  N  R  4.467   4.346  17.367  -0.805  -0.392  -1.420  C1    MA8   2  
MA8  C4    C2    C  0  1  N  N  S  3.067   6.966  17.385   1.652  -1.515  -0.381  C4    MA8   3  
MA8  C5    C3    C  0  1  N  N  R  3.008   5.973  16.203   0.829  -2.136  -1.516  C5    MA8   4  
MA8  O4    O2    O  0  1  N  N  N  1.787   7.660  17.484   3.044  -1.726  -0.607  O4    MA8   5  
MA8  O3    O3    O  0  1  N  N  N  3.434   7.041  19.751   1.997   0.472   0.933  O3    MA8   6  
MA8  O1    O4    O  0  1  N  N  N  3.384   3.408  17.643  -0.408   0.188  -2.661  O1    MA8   7  
MA8  N2    N1    N  0  1  N  N  N  4.937   4.591  19.755  -0.339   1.719  -0.254  N2    MA8   8  
MA8  C6    C4    C  0  1  N  N  N  2.916   6.688  14.869   0.919  -3.660  -1.521  C6    MA8   9  
MA8  C2    C5    C  0  1  N  N  R  4.593   5.325  18.485  -0.089   0.296  -0.254  C2    MA8  10  
MA8  C3    C6    C  0  1  N  N  R  3.289   6.146  18.652   1.412  -0.006  -0.280  C3    MA8  11  
MA8  O6    O5    O  0  1  N  N  N  2.743   5.729  13.859   0.127  -4.153  -2.586  O6    MA8  12  
MA8  C7A   C7    C  0  1  N  N  R  2.533   1.142  14.781  -1.533   2.627  -3.958  C7A   MA8  13  
MA8  C8A   C8    C  0  1  N  N  N  2.262  -0.153  15.598  -0.932   2.483  -5.361  C8A   MA8  14  
MA8  C9    C9    C  0  1  N  N  N  3.417   2.268  16.815  -1.458   0.119  -3.627  C9    MA8  15  
MA8  C10   C10   C  0  1  N  N  R  2.415   2.404  15.659  -2.322   1.380  -3.517  C10   MA8  16  
MA8  O6A   O6    O  0  1  N  N  N  4.082   0.896  18.697   0.027  -1.163  -5.018  O6A   MA8  17  
MA8  O7A   O7    O  0  1  N  N  N  2.892  -1.412  17.570   0.410   1.089  -6.784  O7A   MA8  18  
MA8  O8    O8    O  0  1  N  N  N  1.065   2.537  16.256  -3.486   1.204  -4.319  O8    MA8  19  
MA8  O9    O9    O  0  1  N  N  N  2.482  -1.266  14.779  -1.976   2.388  -6.334  O9    MA8  20  
MA8  C11   C11   C  0  1  N  N  S  3.210  -0.252  16.810  -0.059   1.226  -5.443  C11   MA8  21  
MA8  C12   C12   C  0  1  N  N  R  3.092   0.995  17.665  -0.841  -0.030  -5.029  C12   MA8  22  
MA8  O10   O10   O  0  1  N  N  N  1.632   1.228  13.666  -2.372   3.778  -3.921  O10   MA8  23  
MA8  C7    C13   C  0  1  N  N  N  5.936   5.042  20.561  -1.428   2.288   0.392  C7    MA8  24  
MA8  O7    O11   O  0  1  N  N  N  6.783   5.786  20.102  -2.278   1.659   1.019  O7    MA8  25  
MA8  C8    C14   C  0  1  N  N  R  6.103   4.390  21.947  -1.445   3.810   0.262  C8    MA8  26  
MA8  N2A   N2    N  0  1  N  N  N  7.168   3.402  21.861  -2.602   4.200  -0.503  N2A   MA8  27  
MA8  C15   C15   C  0  1  N  N  N  6.552   5.446  22.984  -1.366   4.534   1.608  C15   MA8  28  
MA8  S1    S1    S  0  1  N  N  N  8.277   6.083  22.500   0.130   4.136   2.570  S1    MA8  29  
MA8  H1    H1    H  0  1  N  N  N  5.426   3.792  17.237  -1.887  -0.248  -1.333  H1    MA8  30  
MA8  H4    H2    H  0  1  N  N  N  3.897   7.696  17.241   1.402  -1.989   0.576  H4    MA8  31  
MA8  H5    H3    H  0  1  N  N  N  2.092   5.348  16.323   1.198  -1.791  -2.489  H5    MA8  32  
MA8  HO4   HA    H  0  1  N  Y  N  1.823   8.271  18.211   3.514  -1.121  -0.012  HO4   MA8  33  
MA8  HO3   HB    H  0  1  N  Y  N  2.635   7.544  19.853   1.620  -0.064   1.646  HO3   MA8  34  
MA8  HN2   HC    H  0  1  N  N  N  4.418   3.751  20.012   0.292   2.311  -0.786  HN2   MA8  35  
MA8  H61   H4C1  H  0  1  N  N  N  3.789   7.355  14.680   0.544  -4.057  -0.578  H61   MA8  36  
MA8  H62   H4C2  H  0  1  N  N  N  2.121   7.470  14.857   1.954  -3.970  -1.667  H62   MA8  37  
MA8  H2    H5    H  0  1  N  N  N  5.425   6.028  18.247  -0.502  -0.077   0.692  H2    MA8  38  
MA8  H3    H6    H  0  1  N  N  N  2.424   5.463  18.824   1.912   0.522  -1.101  H3    MA8  39  
MA8  HO6   HD    H  0  1  N  Y  N  2.685   6.177  13.023  -0.583  -4.688  -2.190  HO6   MA8  40  
MA8  H7    H7    H  0  1  N  N  N  3.574   1.091  14.384  -0.719   2.805  -3.244  H7    MA8  41  
MA8  H8    H8    H  0  1  N  N  N  1.205  -0.155  15.952  -0.354   3.375  -5.628  H8    MA8  42  
MA8  H9    H9    H  0  1  N  N  N  4.443   2.163  16.390  -2.047  -0.776  -3.398  H9    MA8  43  
MA8  H10   H10   H  0  1  N  N  N  2.654   3.310  15.055  -2.663   1.524  -2.485  H10   MA8  44  
MA8  HH    HH    H  0  1  N  N  N  3.885   0.123  19.213  -0.188  -1.676  -5.811  HH    MA8  45  
MA8  HI    HI    H  0  1  N  N  N  3.476  -1.473  18.317   1.076   0.387  -6.768  HI    MA8  46  
MA8  HG    HG    H  0  1  N  N  N  0.445   2.621  15.541  -3.543   0.256  -4.508  HG    MA8  47  
MA8  HF    HF    H  0  1  N  N  N  2.316  -2.057  15.278  -1.588   2.670  -7.175  HF    MA8  48  
MA8  H11   H11   H  0  1  N  N  N  4.259  -0.339  16.441   0.830   1.340  -4.813  H11   MA8  49  
MA8  H12   H12   H  0  1  N  N  N  2.072   1.071  18.108  -1.621  -0.246  -5.767  H12   MA8  50  
MA8  HE    HE    H  0  1  N  N  N  1.798   2.019  13.167  -3.128   3.584  -4.496  HE    MA8  51  
MA8  H81   H14   H  0  1  N  N  N  5.150   3.909  22.269  -0.579   4.101  -0.345  H81   MA8  52  
MA8  H2N1  H2N1  H  0  0  N  N  N  7.243   2.634  22.528  -3.042   5.084  -0.308  H2N1  MA8  53  
MA8  H2N2  H2N2  H  0  0  N  N  N  8.137   3.636  22.079  -3.069   3.510  -1.067  H2N2  MA8  54  
MA8  H151  H151  H  0  0  N  N  N  6.518   5.058  24.029  -1.382   5.619   1.462  H151  MA8  55  
MA8  H152  H152  H  0  0  N  N  N  5.811   6.271  23.101  -2.232   4.271   2.225  H152  MA8  56  
MA8  HS1   HS1   H  0  1  N  N  N  8.340   6.228  21.210  -0.521   3.689   3.652  HS1   MA8  57  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
MA8  O5   C1    SING  N  N   1  
MA8  O5   C5    SING  N  N   2  
MA8  C1   O1    SING  N  N   3  
MA8  C1   C2    SING  N  N   4  
MA8  C1   H1    SING  N  N   5  
MA8  C4   C5    SING  N  N   6  
MA8  C4   O4    SING  N  N   7  
MA8  C4   C3    SING  N  N   8  
MA8  C4   H4    SING  N  N   9  
MA8  C5   C6    SING  N  N  10  
MA8  C5   H5    SING  N  N  11  
MA8  O4   HO4   SING  N  N  12  
MA8  O3   C3    SING  N  N  13  
MA8  O3   HO3   SING  N  N  14  
MA8  O1   C9    SING  N  N  15  
MA8  N2   C2    SING  N  N  16  
MA8  N2   C7    SING  N  N  17  
MA8  N2   HN2   SING  N  N  18  
MA8  C6   O6    SING  N  N  19  
MA8  C6   H61   SING  N  N  20  
MA8  C6   H62   SING  N  N  21  
MA8  C2   C3    SING  N  N  22  
MA8  C2   H2    SING  N  N  23  
MA8  C3   H3    SING  N  N  24  
MA8  O6   HO6   SING  N  N  25  
MA8  C7A  C8A   SING  N  N  26  
MA8  C7A  C10   SING  N  N  27  
MA8  C7A  O10   SING  N  N  28  
MA8  C7A  H7    SING  N  N  29  
MA8  C8A  O9    SING  N  N  30  
MA8  C8A  C11   SING  N  N  31  
MA8  C8A  H8    SING  N  N  32  
MA8  C9   C10   SING  N  N  33  
MA8  C9   C12   SING  N  N  34  
MA8  C9   H9    SING  N  N  35  
MA8  C10  O8    SING  N  N  36  
MA8  C10  H10   SING  N  N  37  
MA8  O6A  C12   SING  N  N  38  
MA8  O6A  HH    SING  N  N  39  
MA8  O7A  C11   SING  N  N  40  
MA8  O7A  HI    SING  N  N  41  
MA8  O8   HG    SING  N  N  42  
MA8  O9   HF    SING  N  N  43  
MA8  C11  C12   SING  N  N  44  
MA8  C11  H11   SING  N  N  45  
MA8  C12  H12   SING  N  N  46  
MA8  O10  HE    SING  N  N  47  
MA8  C7   O7    DOUB  N  N  48  
MA8  C7   C8    SING  N  N  49  
MA8  C8   N2A   SING  N  N  50  
MA8  C8   C15   SING  N  N  51  
MA8  C8   H81   SING  N  N  52  
MA8  N2A  H2N1  SING  N  N  53  
MA8  N2A  H2N2  SING  N  N  54  
MA8  C15  S1    SING  N  N  55  
MA8  C15  H151  SING  N  N  56  
MA8  C15  H152  SING  N  N  57  
MA8  HS1  S1    SING  N  N  58  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
MA8  SMILES            ACDLabs               10.04  "O=C(NC2C(O)C(O)C(OC2OC1C(O)C(O)C(O)C(O)C1O)CO)C(N)CS"  
MA8  SMILES_CANONICAL  CACTVS                3.341  "N[C@@H](CS)C(=O)N[C@@H]1[C@@H](O)[C@H](O)[C@@H](CO)O[C@@H]1O[C@H]2[C@H](O)[C@@H](O)[C@H](O)[C@@H](O)[C@H]2O"  
MA8  SMILES            CACTVS                3.341  "N[CH](CS)C(=O)N[CH]1[CH](O)[CH](O)[CH](CO)O[CH]1O[CH]2[CH](O)[CH](O)[CH](O)[CH](O)[CH]2O"  
MA8  SMILES_CANONICAL  "OpenEye OEToolkits"  1.5.0  "C([C@@H]1[C@H]([C@@H]([C@H]([C@H](O1)OC2[C@@H]([C@@H](C([C@@H]([C@H]2O)O)O)O)O)NC(=O)[C@H](CS)N)O)O)O"  
MA8  SMILES            "OpenEye OEToolkits"  1.5.0  "C(C1C(C(C(C(O1)OC2C(C(C(C(C2O)O)O)O)O)NC(=O)C(CS)N)O)O)O"  
MA8  InChI             InChI                 1.03   "InChI=1S/C15H28N2O11S/c16-3(2-29)14(26)17-5-7(20)6(19)4(1-18)27-15(5)28-13-11(24)9(22)8(21)10(23)12(13)25/h3-13,15,18-25,29H,1-2,16H2,(H,17,26)/t3-,4+,5+,6+,7+,8-,9-,10+,11+,12+,13-,15+/m0/s1"  
MA8  InChIKey          InChI                 1.03   ZGXSCMBZZVXWGF-BSEFFJTHSA-N  
#   #
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
MA8  "SYSTEMATIC NAME"  ACDLabs               10.04  "(1S,2R,3R,4S,5S,6R)-2,3,4,5,6-pentahydroxycyclohexyl 2-(L-cysteinylamino)-2-deoxy-alpha-D-glucopyranoside"  
MA8  "SYSTEMATIC NAME"  "OpenEye OEToolkits"  1.5.0  
;(2R)-2-amino-N-[(2R,3R,4R,5S,6R)-4,5-dihydroxy-6-(hydroxymethyl)-2-[(2R,3S,5R,6R)-2,3,4,5,6-pentahydroxycyclohexyl]oxy-
oxan-3-yl]-3-sulfanyl-propanamide
;
  
#
_pdbx_chem_comp_related.comp_id            MA8
_pdbx_chem_comp_related.related_comp_id    NDG
_pdbx_chem_comp_related.relationship_type  "Carbohydrate core"
_pdbx_chem_comp_related.details            ?
#   #
loop_
_pdbx_chem_comp_atom_related.ordinal
_pdbx_chem_comp_atom_related.comp_id
_pdbx_chem_comp_atom_related.atom_id
_pdbx_chem_comp_atom_related.related_comp_id
_pdbx_chem_comp_atom_related.related_atom_id
_pdbx_chem_comp_atom_related.related_type
 1  MA8  C1   NDG  C1   "Carbohydrate core"  
 2  MA8  C7   NDG  C7   "Carbohydrate core"  
 3  MA8  C8   NDG  C8   "Carbohydrate core"  
 4  MA8  C4   NDG  C4   "Carbohydrate core"  
 5  MA8  C5   NDG  C5   "Carbohydrate core"  
 6  MA8  C6   NDG  C6   "Carbohydrate core"  
 7  MA8  C2   NDG  C2   "Carbohydrate core"  
 8  MA8  C3   NDG  C3   "Carbohydrate core"  
 9  MA8  N2   NDG  N2   "Carbohydrate core"  
10  MA8  O5   NDG  O5   "Carbohydrate core"  
11  MA8  O7   NDG  O7   "Carbohydrate core"  
12  MA8  O4   NDG  O4   "Carbohydrate core"  
13  MA8  O3   NDG  O3   "Carbohydrate core"  
14  MA8  O1   NDG  O1   "Carbohydrate core"  
15  MA8  O6   NDG  O6   "Carbohydrate core"  
16  MA8  H1   NDG  H1   "Carbohydrate core"  
17  MA8  H81  NDG  H81  "Carbohydrate core"  
18  MA8  H4   NDG  H4   "Carbohydrate core"  
19  MA8  H5   NDG  H5   "Carbohydrate core"  
20  MA8  H61  NDG  H61  "Carbohydrate core"  
21  MA8  H62  NDG  H62  "Carbohydrate core"  
22  MA8  H2   NDG  H2   "Carbohydrate core"  
23  MA8  H3   NDG  H3   "Carbohydrate core"  
24  MA8  HO4  NDG  HO4  "Carbohydrate core"  
25  MA8  HO3  NDG  HO3  "Carbohydrate core"  
26  MA8  HN2  NDG  HN2  "Carbohydrate core"  
27  MA8  HO6  NDG  HO6  "Carbohydrate core"  
#   #
loop_
_pdbx_chem_comp_feature.comp_id
_pdbx_chem_comp_feature.type
_pdbx_chem_comp_feature.value
_pdbx_chem_comp_feature.source
_pdbx_chem_comp_feature.support
MA8  "CARBOHYDRATE ISOMER"                  D         PDB  ?  
MA8  "CARBOHYDRATE RING"                    pyranose  PDB  ?  
MA8  "CARBOHYDRATE ANOMER"                  alpha     PDB  ?  
MA8  "CARBOHYDRATE PRIMARY CARBONYL GROUP"  aldose    PDB  ?  
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
MA8  "Create component"          2005-09-26  EBI   
MA8  "Modify descriptor"         2011-06-04  RCSB  
MA8  "Other modification"        2020-07-03  RCSB  
MA8  "Modify parent residue"     2020-07-17  RCSB  
MA8  "Modify name"               2020-07-17  RCSB  
MA8  "Modify synonyms"           2020-07-17  RCSB  
MA8  "Modify internal type"      2020-07-17  RCSB  
MA8  "Modify linking type"       2020-07-17  RCSB  
MA8  "Modify atom id"            2020-07-17  RCSB  
MA8  "Modify component atom id"  2020-07-17  RCSB  
MA8  "Modify leaving atom flag"  2020-07-17  RCSB  
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