data_JD8
#

_chem_comp.id                                   JD8
_chem_comp.name                                 "5-azanyl-3-[1-[[(2~{R})-1-methylpiperidin-2-yl]methyl]indol-6-yl]-1~{H}-pyrazole-4-carbonitrile"
_chem_comp.type                                 NON-POLYMER
_chem_comp.pdbx_type                            HETAIN
_chem_comp.formula                              "C19 H22 N6"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        ?
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2019-02-19
_chem_comp.pdbx_modified_date                   2019-09-13
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       334.418
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    JD8
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       6QR4
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 RCSB
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
JD8  C10  C1   C  0  1  Y  N  N  -24.295  18.647  -11.244   1.117   2.889  -0.275  C10  JD8   1  
JD8  C13  C2   C  0  1  Y  N  N  -25.175  22.183  -10.400  -2.413   2.492   0.512  C13  JD8   2  
JD8  C15  C3   C  0  1  N  N  N  -23.104  23.445  -10.847  -2.604   0.140   1.380  C15  JD8   3  
JD8  C17  C4   C  0  1  N  N  N  -21.521  22.897   -8.954  -3.628  -2.066   0.808  C17  JD8   4  
JD8  C20  C5   C  0  1  N  N  N  -21.610  25.639   -8.199  -4.236  -1.006  -1.818  C20  JD8   5  
JD8  C22  C6   C  0  1  N  N  N  -21.247  25.434  -10.354  -5.106   0.303   0.024  C22  JD8   6  
JD8  C24  C7   C  0  1  N  N  N  -20.763  16.111  -12.459   4.363   0.278  -1.510  C24  JD8   7  
JD8  N01  N1   N  0  1  N  N  N  -17.767  16.631  -12.892   5.962  -2.053  -0.319  N01  JD8   8  
JD8  C02  C8   C  0  1  Y  N  N  -18.752  17.640  -12.635   4.783  -1.542   0.190  C02  JD8   9  
JD8  N03  N2   N  0  1  Y  N  N  -18.469  18.977  -12.556   4.139  -1.973   1.293  N03  JD8  10  
JD8  N04  N3   N  0  1  Y  N  N  -19.612  19.635  -12.313   2.983  -1.213   1.489  N04  JD8  11  
JD8  C05  C9   C  0  1  Y  N  N  -20.624  18.745  -12.266   2.884  -0.315   0.536  C05  JD8  12  
JD8  C06  C10  C  0  1  Y  N  N  -22.041  19.184  -11.881   1.804   0.687   0.380  C06  JD8  13  
JD8  C07  C11  C  0  1  Y  N  N  -22.214  20.547  -11.579   0.501   0.360   0.736  C07  JD8  14  
JD8  C08  C12  C  0  1  Y  N  N  -23.477  20.963  -11.127  -0.508   1.303   0.593  C08  JD8  15  
JD8  C09  C13  C  0  1  Y  N  N  -24.500  20.048  -10.959  -0.198   2.576   0.078  C09  JD8  16  
JD8  C11  C14  C  0  1  Y  N  N  -23.067  18.225  -11.676   2.102   1.957  -0.125  C11  JD8  17  
JD8  C12  C15  C  0  1  Y  N  N  -25.594  20.814  -10.489  -1.462   3.316   0.043  C12  JD8  18  
JD8  N14  N4   N  0  1  Y  N  N  -23.926  22.246  -10.776  -1.862   1.285   0.846  N14  JD8  19  
JD8  C16  C16  C  0  1  N  N  R  -22.580  23.869   -9.474  -2.966  -0.810   0.237  C16  JD8  20  
JD8  C18  C17  C  0  1  N  N  N  -21.088  23.233   -7.625  -4.007  -3.005  -0.340  C18  JD8  21  
JD8  C19  C18  C  0  1  N  N  N  -20.743  24.615   -7.448  -4.937  -2.267  -1.308  C19  JD8  22  
JD8  N21  N5   N  0  1  N  N  N  -22.124  25.230   -9.477  -3.896  -0.140  -0.682  N21  JD8  23  
JD8  C23  C19  C  0  1  Y  N  N  -20.107  17.463  -12.417   4.048  -0.487  -0.341  C23  JD8  24  
JD8  N25  N6   N  0  1  N  N  N  -21.180  15.067  -12.499   4.612   0.884  -2.438  N25  JD8  25  
JD8  H1   H1   H  0  1  N  N  N  -25.102  17.940  -11.118   1.353   3.866  -0.670  H1   JD8  26  
JD8  H2   H2   H  0  1  N  N  N  -25.785  23.015  -10.079  -3.458   2.746   0.612  H2   JD8  27  
JD8  H3   H3   H  0  1  N  N  N  -22.247  23.248  -11.508  -1.987  -0.386   2.108  H3   JD8  28  
JD8  H4   H4   H  0  1  N  N  N  -23.708  24.264  -11.264  -3.516   0.491   1.863  H4   JD8  29  
JD8  H5   H5   H  0  1  N  N  N  -21.945  21.882   -8.943  -2.933  -2.572   1.478  H5   JD8  30  
JD8  H6   H6   H  0  1  N  N  N  -20.652  22.924   -9.628  -4.526  -1.786   1.360  H6   JD8  31  
JD8  H7   H7   H  0  1  N  N  N  -21.000  26.541   -8.357  -3.326  -1.285  -2.348  H7   JD8  32  
JD8  H8   H8   H  0  1  N  N  N  -22.469  25.885   -7.557  -4.901  -0.470  -2.496  H8   JD8  33  
JD8  H9   H9   H  0  1  N  N  N  -20.930  26.487  -10.318  -4.843   1.080   0.742  H9   JD8  34  
JD8  H10  H10  H  0  1  N  N  N  -20.381  24.783  -10.164  -5.821   0.700  -0.696  H10  JD8  35  
JD8  H11  H11  H  0  1  N  N  N  -21.663  25.210  -11.347  -5.549  -0.543   0.550  H11  JD8  36  
JD8  H12  H12  H  0  1  N  N  N  -18.205  15.732  -12.904   6.403  -2.792   0.128  H12  JD8  37  
JD8  H13  H13  H  0  1  N  N  N  -17.336  16.804  -13.778   6.349  -1.671  -1.123  H13  JD8  38  
JD8  H14  H14  H  0  1  N  N  N  -17.565  19.392  -12.661   4.433  -2.700   1.863  H14  JD8  39  
JD8  H15  H15  H  0  1  N  N  N  -21.402  21.250  -11.691   0.275  -0.622   1.125  H15  JD8  40  
JD8  H16  H16  H  0  1  N  N  N  -22.881  17.177  -11.858   3.118   2.202  -0.399  H16  JD8  41  
JD8  H17  H17  H  0  1  N  N  N  -26.574  20.434  -10.241  -1.602   4.331  -0.297  H17  JD8  42  
JD8  H18  H18  H  0  1  N  N  N  -23.432  23.804   -8.781  -2.062  -1.090  -0.303  H18  JD8  43  
JD8  H19  H19  H  0  1  N  N  N  -21.901  22.989   -6.926  -3.105  -3.317  -0.868  H19  JD8  44  
JD8  H20  H20  H  0  1  N  N  N  -20.204  22.624   -7.386  -4.518  -3.882   0.059  H20  JD8  45  
JD8  H21  H21  H  0  1  N  N  N  -19.704  24.746   -7.784  -5.855  -1.990  -0.790  H21  JD8  46  
JD8  H22  H22  H  0  1  N  N  N  -20.812  24.842   -6.374  -5.175  -2.917  -2.150  H22  JD8  47  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
JD8  N01  C02  SING  N  N   1  
JD8  C02  N03  SING  Y  N   2  
JD8  C02  C23  DOUB  Y  N   3  
JD8  N03  N04  SING  Y  N   4  
JD8  N25  C24  TRIP  N  N   5  
JD8  C24  C23  SING  N  N   6  
JD8  C23  C05  SING  Y  N   7  
JD8  N04  C05  DOUB  Y  N   8  
JD8  C05  C06  SING  N  N   9  
JD8  C06  C11  DOUB  Y  N  10  
JD8  C06  C07  SING  Y  N  11  
JD8  C11  C10  SING  Y  N  12  
JD8  C07  C08  DOUB  Y  N  13  
JD8  C10  C09  DOUB  Y  N  14  
JD8  C08  C09  SING  Y  N  15  
JD8  C08  N14  SING  Y  N  16  
JD8  C09  C12  SING  Y  N  17  
JD8  C15  N14  SING  N  N  18  
JD8  C15  C16  SING  N  N  19  
JD8  N14  C13  SING  Y  N  20  
JD8  C12  C13  DOUB  Y  N  21  
JD8  C22  N21  SING  N  N  22  
JD8  N21  C16  SING  N  N  23  
JD8  N21  C20  SING  N  N  24  
JD8  C16  C17  SING  N  N  25  
JD8  C17  C18  SING  N  N  26  
JD8  C20  C19  SING  N  N  27  
JD8  C18  C19  SING  N  N  28  
JD8  C10  H1   SING  N  N  29  
JD8  C13  H2   SING  N  N  30  
JD8  C15  H3   SING  N  N  31  
JD8  C15  H4   SING  N  N  32  
JD8  C17  H5   SING  N  N  33  
JD8  C17  H6   SING  N  N  34  
JD8  C20  H7   SING  N  N  35  
JD8  C20  H8   SING  N  N  36  
JD8  C22  H9   SING  N  N  37  
JD8  C22  H10  SING  N  N  38  
JD8  C22  H11  SING  N  N  39  
JD8  N01  H12  SING  N  N  40  
JD8  N01  H13  SING  N  N  41  
JD8  N03  H14  SING  N  N  42  
JD8  C07  H15  SING  N  N  43  
JD8  C11  H16  SING  N  N  44  
JD8  C12  H17  SING  N  N  45  
JD8  C16  H18  SING  N  N  46  
JD8  C18  H19  SING  N  N  47  
JD8  C18  H20  SING  N  N  48  
JD8  C19  H21  SING  N  N  49  
JD8  C19  H22  SING  N  N  50  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
JD8  InChI             InChI                 1.03   "InChI=1S/C19H22N6/c1-24-8-3-2-4-15(24)12-25-9-7-13-5-6-14(10-17(13)25)18-16(11-20)19(21)23-22-18/h5-7,9-10,15H,2-4,8,12H2,1H3,(H3,21,22,23)/t15-/m1/s1"  
JD8  InChIKey          InChI                 1.03   SXMWJVDDIHQQEA-OAHLLOKOSA-N  
JD8  SMILES_CANONICAL  CACTVS                3.385  "CN1CCCC[C@@H]1Cn2ccc3ccc(cc23)c4n[nH]c(N)c4C#N"  
JD8  SMILES            CACTVS                3.385  "CN1CCCC[CH]1Cn2ccc3ccc(cc23)c4n[nH]c(N)c4C#N"  
JD8  SMILES_CANONICAL  "OpenEye OEToolkits"  2.0.7  "CN1CCCC[C@@H]1Cn2ccc3c2cc(cc3)c4c(c([nH]n4)N)C#N"  
JD8  SMILES            "OpenEye OEToolkits"  2.0.7  "CN1CCCCC1Cn2ccc3c2cc(cc3)c4c(c([nH]n4)N)C#N"  
#
_pdbx_chem_comp_identifier.comp_id          JD8
_pdbx_chem_comp_identifier.type             "SYSTEMATIC NAME"
_pdbx_chem_comp_identifier.program          "OpenEye OEToolkits"
_pdbx_chem_comp_identifier.program_version  2.0.7
_pdbx_chem_comp_identifier.identifier       "5-azanyl-3-[1-[[(2~{R})-1-methylpiperidin-2-yl]methyl]indol-6-yl]-1~{H}-pyrazole-4-carbonitrile"
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
JD8  "Create component"  2019-02-19  RCSB  
JD8  "Initial release"   2019-09-18  RCSB  
##
