data_IR8
# 
_chem_comp.id                                    IR8 
_chem_comp.name                                  "[(2R,3S,4R,5R)-3,4-dihydroxypyrrolidine-2,5-diyl]bis(methylene) bis[dihydrogen (phosphate)]" 
_chem_comp.type                                  NON-POLYMER 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C6 H15 N O10 P2" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2017-04-26 
_chem_comp.pdbx_modified_date                    2017-12-22 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        323.132 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     IR8 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        5VJN 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
IR8 O3P O1  O 0 1 N N N -3.010 -4.752  33.151 -5.256 0.419  -0.097 O3P IR8 1  
IR8 P1  P1  P 0 1 N N N -2.988 -5.641  34.372 -4.046 1.259  0.054  P1  IR8 2  
IR8 O1P O2  O 0 1 N N N -1.595 -6.175  34.612 -4.246 2.637  -0.754 O1P IR8 3  
IR8 O2P O3  O 0 1 N N N -3.460 -4.886  35.594 -3.808 1.580  1.614  O2P IR8 4  
IR8 O1  O4  O 0 1 N N N -3.979 -6.889  34.135 -2.770 0.472  -0.533 O1  IR8 5  
IR8 C1  C1  C 0 1 N N N -5.110 -6.788  33.274 -2.392 -0.835 -0.095 C1  IR8 6  
IR8 C2  C2  C 0 1 N N R -5.926 -8.072  33.390 -1.141 -1.285 -0.853 C2  IR8 7  
IR8 C3  C3  C 0 1 N N S -7.263 -8.037  32.655 -0.787 -2.736 -0.466 C3  IR8 8  
IR8 O3  O5  O 0 1 N N N -7.252 -7.171  31.509 -1.332 -3.065 0.813  O3  IR8 9  
IR8 N1  N1  N 0 1 N N N -6.251 -8.329  34.813 0.005  -0.439 -0.474 N1  IR8 10 
IR8 C5  C4  C 0 1 N N R -7.670 -7.985  35.045 1.037  -1.295 0.148  C5  IR8 11 
IR8 C4  C5  C 0 1 N N R -8.260 -7.588  33.704 0.764  -2.714 -0.411 C4  IR8 12 
IR8 O4  O6  O 0 1 N N N -8.419 -6.170  33.673 1.259  -3.718 0.476  O4  IR8 13 
IR8 C6  C6  C 0 1 N N N -8.392 -9.175  35.660 2.435  -0.824 -0.256 C6  IR8 14 
IR8 O6  O7  O 0 1 N N N -7.743 -9.516  36.884 2.684  0.467  0.305  O6  IR8 15 
IR8 P2  P2  P 0 1 N N N -8.463 -9.390  38.316 4.062  1.269  0.083  P2  IR8 16 
IR8 O4P O8  O 0 1 N N N -7.707 -10.301 39.254 4.044  2.619  0.961  O4P IR8 17 
IR8 O5P O9  O 0 1 N N N -9.884 -9.883  38.190 5.199  0.421  0.506  O5P IR8 18 
IR8 O6P O10 O 0 1 N N N -8.413 -7.965  38.807 4.220  1.643  -1.474 O6P IR8 19 
IR8 H1  H1  H 0 1 N N N -1.008 -5.843  33.943 -4.999 3.164  -0.453 H1  IR8 20 
IR8 H2  H2  H 0 1 N N N -3.679 -3.994  35.351 -3.031 2.128  1.788  H2  IR8 21 
IR8 H3  H3  H 0 1 N N N -4.774 -6.655  32.235 -2.182 -0.813 0.974  H3  IR8 22 
IR8 H4  H4  H 0 1 N N N -5.728 -5.928  33.573 -3.207 -1.533 -0.291 H4  IR8 23 
IR8 H5  H5  H 0 1 N N N -5.328 -8.907  32.997 -1.314 -1.216 -1.927 H5  IR8 24 
IR8 H6  H6  H 0 1 N N N -7.517 -9.061  32.344 -1.136 -3.434 -1.226 H6  IR8 25 
IR8 H7  H7  H 0 1 N N N -8.105 -7.187  31.091 -1.138 -3.967 1.103  H7  IR8 26 
IR8 H8  H8  H 0 1 N N N -6.100 -9.295  35.023 0.375  0.049  -1.277 H8  IR8 27 
IR8 H10 H10 H 0 1 N N N -7.735 -7.130  35.734 0.933  -1.287 1.233  H10 IR8 28 
IR8 H11 H11 H 0 1 N N N -9.221 -8.100  33.551 1.191  -2.830 -1.407 H11 IR8 29 
IR8 H12 H12 H 0 1 N N N -9.046 -5.907  34.336 1.027  -4.621 0.217  H12 IR8 30 
IR8 H13 H13 H 0 1 N N N -9.441 -8.911  35.858 3.178  -1.530 0.115  H13 IR8 31 
IR8 H14 H14 H 0 1 N N N -8.353 -10.030 34.969 2.500  -0.766 -1.343 H14 IR8 32 
IR8 H15 H15 H 0 1 N N N -8.285 -10.988 39.564 4.845  3.154  0.876  H15 IR8 33 
IR8 H16 H16 H 0 1 N N N -9.297 -7.646  38.945 3.508  2.199  -1.820 H16 IR8 34 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
IR8 O3  C3  SING N N 1  
IR8 C3  C2  SING N N 2  
IR8 C3  C4  SING N N 3  
IR8 O3P P1  DOUB N N 4  
IR8 C1  C2  SING N N 5  
IR8 C1  O1  SING N N 6  
IR8 C2  N1  SING N N 7  
IR8 O4  C4  SING N N 8  
IR8 C4  C5  SING N N 9  
IR8 O1  P1  SING N N 10 
IR8 P1  O1P SING N N 11 
IR8 P1  O2P SING N N 12 
IR8 N1  C5  SING N N 13 
IR8 C5  C6  SING N N 14 
IR8 C6  O6  SING N N 15 
IR8 O6  P2  SING N N 16 
IR8 O5P P2  DOUB N N 17 
IR8 P2  O6P SING N N 18 
IR8 P2  O4P SING N N 19 
IR8 O1P H1  SING N N 20 
IR8 O2P H2  SING N N 21 
IR8 C1  H3  SING N N 22 
IR8 C1  H4  SING N N 23 
IR8 C2  H5  SING N N 24 
IR8 C3  H6  SING N N 25 
IR8 O3  H7  SING N N 26 
IR8 N1  H8  SING N N 27 
IR8 C5  H10 SING N N 28 
IR8 C4  H11 SING N N 29 
IR8 O4  H12 SING N N 30 
IR8 C6  H13 SING N N 31 
IR8 C6  H14 SING N N 32 
IR8 O4P H15 SING N N 33 
IR8 O6P H16 SING N N 34 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
IR8 SMILES           ACDLabs              12.01 "O=P(O)(O)OCC1NC(COP(O)(O)=O)C(C1O)O"                                                                                               
IR8 InChI            InChI                1.03  "InChI=1S/C6H15NO10P2/c8-5-3(1-16-18(10,11)12)7-4(6(5)9)2-17-19(13,14)15/h3-9H,1-2H2,(H2,10,11,12)(H2,13,14,15)/t3-,4-,5-,6+/m1/s1" 
IR8 InChIKey         InChI                1.03  JDMJAXIARMVOFV-KAZBKCHUSA-N                                                                                                         
IR8 SMILES_CANONICAL CACTVS               3.385 "O[C@@H]1[C@H](O)[C@@H](CO[P](O)(O)=O)N[C@@H]1CO[P](O)(O)=O"                                                                        
IR8 SMILES           CACTVS               3.385 "O[CH]1[CH](O)[CH](CO[P](O)(O)=O)N[CH]1CO[P](O)(O)=O"                                                                               
IR8 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.6 "C([C@@H]1[C@H]([C@H]([C@H](N1)COP(=O)(O)O)O)O)OP(=O)(O)O"                                                                          
IR8 SMILES           "OpenEye OEToolkits" 2.0.6 "C(C1C(C(C(N1)COP(=O)(O)O)O)O)OP(=O)(O)O"                                                                                           
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
IR8 "SYSTEMATIC NAME" ACDLabs              12.01 "[(2R,3R,4S,5R)-3,4-dihydroxypyrrolidine-2,5-diyl]bis(methylene) bis[dihydrogen (phosphate)]"                    
IR8 "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.6 "[(2~{R},3~{S},4~{R},5~{R})-3,4-bis(oxidanyl)-5-(phosphonooxymethyl)pyrrolidin-2-yl]methyl dihydrogen phosphate" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
IR8 "Create component" 2017-04-26 RCSB 
IR8 "Modify name"      2017-08-18 RCSB 
IR8 "Initial release"  2017-12-27 RCSB 
# 
