data_DO8
#

_chem_comp.id                                   DO8
_chem_comp.name                                 "3-deoxy-8-O-phosphono-alpha-D-manno-oct-2-ulopyranosonic acid"
_chem_comp.type                                 "D-saccharide, alpha linking"
_chem_comp.pdbx_type                            ATOMS
_chem_comp.formula                              "C8 H15 O11 P"
_chem_comp.mon_nstd_parent_comp_id              KDO
_chem_comp.pdbx_synonyms                        
;3-DEOXY-D-MANNO-2-OCTULOSONATE-8-PHOSPHATE; 3-deoxy-8-O-phosphono-alpha-D-manno-oct-2-ulosonic acid;
3-deoxy-8-O-phosphono-D-manno-oct-2-ulosonic acid; 3-deoxy-8-O-phosphono-manno-oct-2-ulosonic acid
;

_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2004-08-18
_chem_comp.pdbx_modified_date                   2020-07-17
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       318.172
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    DO8
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       ?
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       ?
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 RCSB
#   #
loop_
_pdbx_chem_comp_synonyms.ordinal
_pdbx_chem_comp_synonyms.comp_id
_pdbx_chem_comp_synonyms.name
_pdbx_chem_comp_synonyms.provenance
_pdbx_chem_comp_synonyms.type
1  DO8  3-DEOXY-D-MANNO-2-OCTULOSONATE-8-PHOSPHATE                 PDB  ?  
2  DO8  "3-deoxy-8-O-phosphono-alpha-D-manno-oct-2-ulosonic acid"  PDB  ?  
3  DO8  "3-deoxy-8-O-phosphono-D-manno-oct-2-ulosonic acid"        PDB  ?  
4  DO8  "3-deoxy-8-O-phosphono-manno-oct-2-ulosonic acid"          PDB  ?  
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
DO8  C1    C1    C  0  1  N  N  N  7.160  -12.399  279.146  -2.487  -2.367   0.205  C1    DO8   1  
DO8  O1B   O1A   O  0  1  N  N  N  6.208  -12.869  279.801  -2.793  -2.574   1.495  O1B   DO8   2  
DO8  O1A   O1B   O  0  1  N  N  N  8.221  -12.041  279.772  -2.394  -3.304  -0.552  O1A   DO8   3  
DO8  C2    C2    C  0  1  N  N  R  7.002  -12.248  277.639  -2.259  -0.965  -0.300  C2    DO8   4  
DO8  C3    C3    C  0  1  N  N  N  5.994  -13.360  277.148  -3.482  -0.104   0.025  C3    DO8   5  
DO8  C4    C4    C  0  1  N  N  R  5.588  -13.045  275.710  -3.256   1.310  -0.521  C4    DO8   6  
DO8  O4    O4    O  0  1  N  N  N  4.635  -14.097  275.365  -4.321   2.164  -0.098  O4    DO8   7  
DO8  C5    C5    C  0  1  N  N  R  4.928  -11.669  275.625  -1.923   1.838   0.023  C5    DO8   8  
DO8  O5    O5    O  0  1  N  N  N  3.731  -11.621  276.449  -2.018   2.007   1.438  O5    DO8   9  
DO8  C6    C6    C  0  1  N  N  R  6.002  -10.565  276.056  -0.818   0.830  -0.303  C6    DO8  10  
DO8  O6    O6    O  0  1  N  N  N  6.550  -10.828  277.432  -1.102  -0.417   0.328  O6    DO8  11  
DO8  C7    C7    C  0  1  N  N  R  5.481   -9.004  276.169   0.523   1.364   0.205  C7    DO8  12  
DO8  O7    O7    O  0  1  N  N  N  5.010   -7.913  277.036   0.810   2.612  -0.429  O7    DO8  13  
DO8  C8    C8    C  0  1  N  N  N  4.920   -8.860  274.688   1.629   0.359  -0.123  C8    DO8  14  
DO8  P1    P1    P  0  1  N  N  N  5.023   -6.015  275.167   3.974  -0.297   0.070  P1    DO8  15  
DO8  O2P   O2P   O  0  1  N  N  N  3.699   -6.253  276.222   5.362   0.071   0.797  O2P   DO8  16  
DO8  O3P   O3P   O  0  1  N  N  N  6.451   -5.736  276.001   4.190  -0.308  -1.526  O3P   DO8  17  
DO8  O8    O     O  0  1  N  N  N  5.248   -7.465  274.219   2.860   0.801   0.452  O8    DO8  18  
DO8  O1P   O1P   O  0  1  N  N  N  4.613   -4.669  274.243   3.522  -1.634   0.515  O1P   DO8  19  
DO8  O2    O2    O  0  1  N  Y  N  8.336  -12.481  276.955  -2.062  -0.996  -1.715  O2    DO8  20  
DO8  HO1B  H1A   H  0  0  N  N  N  5.422  -13.134  279.337  -2.939  -3.473   1.819  HO1B  DO8  21  
DO8  H31   H31   H  0  1  N  N  N  6.405  -14.390  277.260  -4.367  -0.537  -0.441  H31   DO8  22  
DO8  H32   H32   H  0  1  N  N  N  5.115  -13.471  277.826  -3.621  -0.060   1.105  H32   DO8  23  
DO8  H4    H4    H  0  1  N  N  N  6.460  -13.017  275.016  -3.221   1.281  -1.611  H4    DO8  24  
DO8  HO4   HO4   H  0  1  N  Y  N  4.382  -13.901  274.470  -5.138   1.787  -0.452  HO4   DO8  25  
DO8  H5    H5    H  0  1  N  N  N  4.599  -11.461  274.579  -1.691   2.795  -0.445  H5    DO8  26  
DO8  HO5   HO5   H  0  1  N  Y  N  3.320  -10.765  276.396  -2.729   2.644   1.596  HO5   DO8  27  
DO8  H6    H6    H  0  1  N  N  N  6.732  -10.660  275.219  -0.765   0.687  -1.382  H6    DO8  28  
DO8  H7    H7    H  0  1  N  N  N  6.197   -8.775  276.992   0.471   1.508   1.284  H7    DO8  29  
DO8  HO7   HO7   H  0  1  N  Y  N  4.709   -7.014  277.101   0.847   2.441  -1.380  HO7   DO8  30  
DO8  H81   H81   H  0  1  N  N  N  5.297   -9.651  273.999   1.367  -0.616   0.286  H81   DO8  31  
DO8  H82   H82   H  0  1  N  N  N  3.835   -9.103  274.606   1.741   0.282  -1.205  H82   DO8  32  
DO8  HOP2  HOP2  H  0  0  N  N  N  2.890   -6.411  275.749   6.000  -0.610   0.542  HOP2  DO8  33  
DO8  HOP3  HOP3  H  0  0  N  N  N  7.186   -5.603  275.414   4.484   0.580  -1.774  HOP3  DO8  34  
DO8  HO2   HO2   H  0  1  N  Y  N  8.237  -12.386  276.014  -1.287  -1.552  -1.877  HO2   DO8  35  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
DO8  C1   O1B   SING  N  N   1  
DO8  C1   O1A   DOUB  N  N   2  
DO8  C1   C2    SING  N  N   3  
DO8  O1B  HO1B  SING  N  N   4  
DO8  C2   C3    SING  N  N   5  
DO8  C2   O6    SING  N  N   6  
DO8  C2   O2    SING  N  N   7  
DO8  C3   C4    SING  N  N   8  
DO8  C3   H31   SING  N  N   9  
DO8  C3   H32   SING  N  N  10  
DO8  C4   O4    SING  N  N  11  
DO8  C4   C5    SING  N  N  12  
DO8  C4   H4    SING  N  N  13  
DO8  O4   HO4   SING  N  N  14  
DO8  C5   O5    SING  N  N  15  
DO8  C5   C6    SING  N  N  16  
DO8  C5   H5    SING  N  N  17  
DO8  O5   HO5   SING  N  N  18  
DO8  C6   O6    SING  N  N  19  
DO8  C6   C7    SING  N  N  20  
DO8  C6   H6    SING  N  N  21  
DO8  C7   O7    SING  N  N  22  
DO8  C7   C8    SING  N  N  23  
DO8  C7   H7    SING  N  N  24  
DO8  O7   HO7   SING  N  N  25  
DO8  C8   O8    SING  N  N  26  
DO8  C8   H81   SING  N  N  27  
DO8  C8   H82   SING  N  N  28  
DO8  P1   O2P   SING  N  N  29  
DO8  P1   O3P   SING  N  N  30  
DO8  P1   O8    SING  N  N  31  
DO8  P1   O1P   DOUB  N  N  32  
DO8  O2P  HOP2  SING  N  N  33  
DO8  O3P  HOP3  SING  N  N  34  
DO8  O2   HO2   SING  N  N  35  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
DO8  SMILES            ACDLabs               10.04  "O=P(O)(O)OCC(O)C1OC(O)(C(=O)O)CC(O)C1O"  
DO8  SMILES_CANONICAL  CACTVS                3.341  "O[C@H](CO[P](O)(O)=O)[C@H]1O[C@](O)(C[C@@H](O)[C@H]1O)C(O)=O"  
DO8  SMILES            CACTVS                3.341  "O[CH](CO[P](O)(O)=O)[CH]1O[C](O)(C[CH](O)[CH]1O)C(O)=O"  
DO8  SMILES_CANONICAL  "OpenEye OEToolkits"  1.5.0  "C1[C@H]([C@H]([C@H](O[C@]1(C(=O)O)O)[C@@H](COP(=O)(O)O)O)O)O"  
DO8  SMILES            "OpenEye OEToolkits"  1.5.0  "C1C(C(C(OC1(C(=O)O)O)C(COP(=O)(O)O)O)O)O"  
DO8  InChI             InChI                 1.03   "InChI=1S/C8H15O11P/c9-3-1-8(14,7(12)13)19-6(5(3)11)4(10)2-18-20(15,16)17/h3-6,9-11,14H,1-2H2,(H,12,13)(H2,15,16,17)/t3-,4-,5-,6-,8-/m1/s1"  
DO8  InChIKey          InChI                 1.03   IZZNRKJLBIYBJN-HXUQBWEZSA-N  
#   #
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
DO8  "SYSTEMATIC NAME"  ACDLabs               10.04  "3-deoxy-8-O-phosphono-alpha-D-manno-oct-2-ulopyranosonic acid"  
DO8  "SYSTEMATIC NAME"  "OpenEye OEToolkits"  1.5.0  "(2R,4R,5R,6R)-2,4,5-trihydroxy-6-[(1R)-1-hydroxy-2-phosphonooxy-ethyl]oxane-2-carboxylic acid"  
#
_pdbx_chem_comp_related.comp_id            DO8
_pdbx_chem_comp_related.related_comp_id    KDO
_pdbx_chem_comp_related.relationship_type  "Carbohydrate core"
_pdbx_chem_comp_related.details            ?
#   #
loop_
_pdbx_chem_comp_atom_related.ordinal
_pdbx_chem_comp_atom_related.comp_id
_pdbx_chem_comp_atom_related.atom_id
_pdbx_chem_comp_atom_related.related_comp_id
_pdbx_chem_comp_atom_related.related_atom_id
_pdbx_chem_comp_atom_related.related_type
 1  DO8  C1    KDO  C1    "Carbohydrate core"  
 2  DO8  C2    KDO  C2    "Carbohydrate core"  
 3  DO8  C3    KDO  C3    "Carbohydrate core"  
 4  DO8  C4    KDO  C4    "Carbohydrate core"  
 5  DO8  C5    KDO  C5    "Carbohydrate core"  
 6  DO8  C6    KDO  C6    "Carbohydrate core"  
 7  DO8  C7    KDO  C7    "Carbohydrate core"  
 8  DO8  C8    KDO  C8    "Carbohydrate core"  
 9  DO8  O8    KDO  O8    "Carbohydrate core"  
10  DO8  O1B   KDO  O1B   "Carbohydrate core"  
11  DO8  O1A   KDO  O1A   "Carbohydrate core"  
12  DO8  O2    KDO  O2    "Carbohydrate core"  
13  DO8  O4    KDO  O4    "Carbohydrate core"  
14  DO8  O5    KDO  O5    "Carbohydrate core"  
15  DO8  O6    KDO  O6    "Carbohydrate core"  
16  DO8  O7    KDO  O7    "Carbohydrate core"  
17  DO8  HO1B  KDO  HO1B  "Carbohydrate core"  
18  DO8  H31   KDO  H31   "Carbohydrate core"  
19  DO8  H32   KDO  H32   "Carbohydrate core"  
20  DO8  H4    KDO  H4    "Carbohydrate core"  
21  DO8  H5    KDO  H5    "Carbohydrate core"  
22  DO8  H6    KDO  H6    "Carbohydrate core"  
23  DO8  H7    KDO  H7    "Carbohydrate core"  
24  DO8  H81   KDO  H81   "Carbohydrate core"  
25  DO8  H82   KDO  H82   "Carbohydrate core"  
26  DO8  HO2   KDO  HO2   "Carbohydrate core"  
27  DO8  HO4   KDO  HO4   "Carbohydrate core"  
28  DO8  HO5   KDO  HO5   "Carbohydrate core"  
29  DO8  HO7   KDO  HO7   "Carbohydrate core"  
#   #
loop_
_pdbx_chem_comp_feature.comp_id
_pdbx_chem_comp_feature.type
_pdbx_chem_comp_feature.value
_pdbx_chem_comp_feature.source
_pdbx_chem_comp_feature.support
DO8  "CARBOHYDRATE ISOMER"                  D         PDB  ?  
DO8  "CARBOHYDRATE RING"                    pyranose  PDB  ?  
DO8  "CARBOHYDRATE ANOMER"                  alpha     PDB  ?  
DO8  "CARBOHYDRATE PRIMARY CARBONYL GROUP"  ketose    PDB  ?  
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
DO8  "Create component"          2004-08-18  RCSB  
DO8  "Modify descriptor"         2011-06-04  RCSB  
DO8  "Other modification"        2020-07-03  RCSB  
DO8  "Modify parent residue"     2020-07-17  RCSB  
DO8  "Modify name"               2020-07-17  RCSB  
DO8  "Modify synonyms"           2020-07-17  RCSB  
DO8  "Modify internal type"      2020-07-17  RCSB  
DO8  "Modify linking type"       2020-07-17  RCSB  
DO8  "Modify atom id"            2020-07-17  RCSB  
DO8  "Modify component atom id"  2020-07-17  RCSB  
DO8  "Modify leaving atom flag"  2020-07-17  RCSB  
##
