data_BO8
# 
_chem_comp.id                                    BO8 
_chem_comp.name                                  "(D-ALPHA-AMINOPIMELYLAMINO)-D-1-ETHYLBORONIC ACID" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C9 H20 B N2 O6" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    -1 
_chem_comp.pdbx_initial_date                     2010-05-04 
_chem_comp.pdbx_modified_date                    2024-09-27 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        263.076 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     BO8 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        2XDM 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  EBI 
_chem_comp.pdbx_pcm                              Y 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
BO8 O1   O1   O 0  1 N N N N N N 17.910 64.836 -15.864 1.462  0.763  1.104  O1   BO8 1  
BO8 C1   C1   C 0  1 N N N N N N 17.682 65.375 -16.939 1.522  0.534  -0.086 C1   BO8 2  
BO8 N    N    N 0  1 N N N N N N 16.895 66.460 -17.101 2.717  0.512  -0.708 N    BO8 3  
BO8 CA   CA   C 0  1 N N S N N N 16.248 67.067 -16.100 3.944  0.766  0.052  CA   BO8 4  
BO8 B    B    B -1 1 N N N N N N 16.548 68.519 -15.952 4.720  -0.611 0.283  B    BO8 5  
BO8 OB1  OB1  O 0  1 N N N N N N 16.419 69.285 -17.274 5.039  -1.163 -0.926 OB1  BO8 6  
BO8 OB2  OB2  O 0  1 N N N N N N 17.970 68.738 -15.425 5.865  -0.375 0.992  OB2  BO8 7  
BO8 CB   CB   C 0  1 N N N N N N 14.752 66.880 -16.310 4.838  1.731  -0.729 CB   BO8 8  
BO8 CA1  CA1  C 0  1 N N N N N N 18.337 64.801 -18.172 0.261  0.268  -0.867 CA1  BO8 9  
BO8 CB1  CB1  C 0  1 N N N N N N 17.403 63.765 -18.769 -0.945 0.344  0.072  CB1  BO8 10 
BO8 CG1  CG1  C 0  1 N N N N N N 17.975 63.140 -20.042 -2.226 0.074  -0.721 CG1  BO8 11 
BO8 CD1  CD1  C 0  1 N N N N N N 17.100 61.951 -20.441 -3.432 0.151  0.217  CD1  BO8 12 
BO8 CE1  CE1  C 0  1 N N R N N N 17.366 61.333 -21.819 -4.712 -0.120 -0.576 CE1  BO8 13 
BO8 NZ1  NZ1  N 0  1 N N N N N N 16.303 60.365 -22.071 -4.696 -1.501 -1.076 NZ1  BO8 14 
BO8 CZ1  CZ1  C 0  1 N N N N N N 17.387 62.353 -22.940 -5.909 0.076  0.320  CZ1  BO8 15 
BO8 O    O    O 0  1 N N N N N N 18.443 63.002 -23.170 -6.364 1.314  0.570  O    BO8 16 
BO8 OH1  OH1  O 0  1 N N N N N N 16.348 62.507 -23.630 -6.457 -0.881 0.813  OH1  BO8 17 
BO8 OX0  OX0  O 0  1 N Y N N N N 15.673 69.308 -15.104 3.921  -1.473 0.981  OX0  BO8 18 
BO8 H    H    H 0  1 N N N N N N 16.790 66.832 -18.023 2.765  0.330  -1.660 H    BO8 19 
BO8 HA11 HA11 H 0  0 N N N N N N 18.524 65.601 -18.903 0.157  1.014  -1.654 HA11 BO8 20 
BO8 HA12 HA12 H 0  0 N N N N N N 19.299 64.336 -17.908 0.312  -0.726 -1.312 HA12 BO8 21 
BO8 HA   HA   H 0  1 N N N N N N 16.600 66.597 -15.170 3.690  1.206  1.016  HA   BO8 22 
BO8 HB1C HB1C H 0  0 N N N N N N 14.247 66.835 -15.334 4.308  2.670  -0.887 HB1C BO8 23 
BO8 HB2C HB2C H 0  0 N N N N N N 14.355 67.726 -16.889 5.751  1.919  -0.164 HB2C BO8 24 
BO8 HB3C HB3C H 0  0 N N N N N N 14.573 65.943 -16.859 5.092  1.291  -1.694 HB3C BO8 25 
BO8 HB1  HB1  H 0  1 N N N N N N 16.392 70.218 -17.098 4.274  -1.357 -1.484 HB1  BO8 26 
BO8 HB2  HB2  H 0  1 N N N N N N 18.575 68.783 -16.156 5.714  0.018  1.863  HB2  BO8 27 
BO8 HX0  HX0  H 0  1 N N N N N N 16.105 69.480 -14.276 4.330  -2.332 1.158  HX0  BO8 28 
BO8 HB11 HB11 H 0  0 N N N N N N 17.243 62.968 -18.028 -0.841 -0.402 0.859  HB11 BO8 29 
BO8 HB12 HB12 H 0  0 N N N N N N 16.460 64.268 -19.031 -0.997 1.338  0.517  HB12 BO8 30 
BO8 HG11 HG11 H 0  0 N N N N N N 17.980 63.885 -20.851 -2.330 0.820  -1.509 HG11 BO8 31 
BO8 HG12 HG12 H 0  0 N N N N N N 19.006 62.802 -19.862 -2.174 -0.920 -1.166 HG12 BO8 32 
BO8 HD11 HD11 H 0  0 N N N N N N 17.266 61.161 -19.694 -3.328 -0.595 1.005  HD11 BO8 33 
BO8 HD12 HD12 H 0  0 N N N N N N 16.074 62.344 -20.489 -3.483 1.144  0.662  HD12 BO8 34 
BO8 HE1  HE1  H 0  1 N N N N N N 18.363 60.869 -21.804 -4.772 0.571  -1.417 HE1  BO8 35 
BO8 HZ11 HZ11 H 0  0 N N N N N N 15.842 60.144 -21.211 -4.642 -2.161 -0.314 HZ11 BO8 36 
BO8 HZ12 HZ12 H 0  0 N N N N N N 15.642 60.755 -22.712 -5.501 -1.685 -1.657 HZ12 BO8 37 
BO8 HB   HB   H 0  1 N N N N N N 18.304 63.582 -23.909 -7.134 1.389  1.150  HB   BO8 38 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
BO8 O1  C1   DOUB N N 1  
BO8 C1  N    SING N N 2  
BO8 C1  CA1  SING N N 3  
BO8 N   CA   SING N N 4  
BO8 CA  B    SING N N 5  
BO8 CA  CB   SING N N 6  
BO8 B   OB1  SING N N 7  
BO8 B   OB2  SING N N 8  
BO8 B   OX0  SING N N 9  
BO8 CA1 CB1  SING N N 10 
BO8 CB1 CG1  SING N N 11 
BO8 CG1 CD1  SING N N 12 
BO8 CD1 CE1  SING N N 13 
BO8 CE1 NZ1  SING N N 14 
BO8 CE1 CZ1  SING N N 15 
BO8 CZ1 O    SING N N 16 
BO8 CZ1 OH1  DOUB N N 17 
BO8 N   H    SING N N 18 
BO8 CA1 HA11 SING N N 19 
BO8 CA1 HA12 SING N N 20 
BO8 CA  HA   SING N N 21 
BO8 CB  HB1C SING N N 22 
BO8 CB  HB2C SING N N 23 
BO8 CB  HB3C SING N N 24 
BO8 OB1 HB1  SING N N 25 
BO8 OB2 HB2  SING N N 26 
BO8 OX0 HX0  SING N N 27 
BO8 CB1 HB11 SING N N 28 
BO8 CB1 HB12 SING N N 29 
BO8 CG1 HG11 SING N N 30 
BO8 CG1 HG12 SING N N 31 
BO8 CD1 HD11 SING N N 32 
BO8 CD1 HD12 SING N N 33 
BO8 CE1 HE1  SING N N 34 
BO8 NZ1 HZ11 SING N N 35 
BO8 NZ1 HZ12 SING N N 36 
BO8 O   HB   SING N N 37 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
BO8 SMILES           ACDLabs              10.04 "O=C(NC(C)[B-](O)(O)O)CCCCC(C(=O)O)N"                                                                                            
BO8 SMILES_CANONICAL CACTVS               3.352 "C[C@@H](NC(=O)CCCC[C@@H](N)C(O)=O)[B-](O)(O)O"                                                                                  
BO8 SMILES           CACTVS               3.352 "C[CH](NC(=O)CCCC[CH](N)C(O)=O)[B-](O)(O)O"                                                                                      
BO8 SMILES_CANONICAL "OpenEye OEToolkits" 1.6.1 "[B-]([C@@H](C)NC(=O)CCCC[C@H](C(=O)O)N)(O)(O)O"                                                                                 
BO8 SMILES           "OpenEye OEToolkits" 1.6.1 "[B-](C(C)NC(=O)CCCCC(C(=O)O)N)(O)(O)O"                                                                                          
BO8 InChI            InChI                1.03  "InChI=1S/C9H20BN2O6/c1-6(10(16,17)18)12-8(13)5-3-2-4-7(11)9(14)15/h6-7,16-18H,2-5,11H2,1H3,(H,12,13)(H,14,15)/q-1/t6-,7-/m1/s1" 
BO8 InChIKey         InChI                1.03  ZSMKWHGOAVMEJJ-RNFRBKRXSA-N                                                                                                      
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
BO8 "SYSTEMATIC NAME" ACDLabs              10.04 "[(1S)-1-{[(6R)-6-amino-6-carboxyhexanoyl]amino}ethyl](trihydroxy)borate(1-)"    
BO8 "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.6.1 "[(1S)-1-[[(6R)-6-amino-7-hydroxy-7-oxo-heptanoyl]amino]ethyl]-trihydroxy-boron" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
BO8 "Create component"  2010-05-04 EBI  
BO8 "Modify descriptor" 2011-06-04 RCSB 
BO8 "Modify PCM"        2024-09-27 PDBE 
# 
_pdbx_chem_comp_pcm.pcm_id                             1 
_pdbx_chem_comp_pcm.comp_id                            BO8 
_pdbx_chem_comp_pcm.modified_residue_id                SER 
_pdbx_chem_comp_pcm.type                               None 
_pdbx_chem_comp_pcm.category                           "Covalent chemical modification" 
_pdbx_chem_comp_pcm.position                           "Amino-acid side chain" 
_pdbx_chem_comp_pcm.polypeptide_position               "Any position" 
_pdbx_chem_comp_pcm.comp_id_linking_atom               B 
_pdbx_chem_comp_pcm.modified_residue_id_linking_atom   OG 
_pdbx_chem_comp_pcm.uniprot_specific_ptm_accession     ? 
_pdbx_chem_comp_pcm.uniprot_generic_ptm_accession      ? 
# 
