data_2M8
#

_chem_comp.id                                   2M8
_chem_comp.name                                 "(2R)-3-hydroxy-2-(alpha-D-mannopyranosyloxy)propanoic acid"
_chem_comp.type                                 "D-saccharide, alpha linking"
_chem_comp.pdbx_type                            ATOMS
_chem_comp.formula                              "C9 H16 O9"
_chem_comp.mon_nstd_parent_comp_id              MAN
_chem_comp.pdbx_synonyms                        
;2-O-ALPHA-MANNOSYL-D-GLYCERATE; (2R)-3-hydroxy-2-(alpha-D-mannosyloxy)propanoic acid;
(2R)-3-hydroxy-2-(D-mannosyloxy)propanoic acid; (2R)-3-hydroxy-2-(mannosyloxy)propanoic acid
;

_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2011-07-14
_chem_comp.pdbx_modified_date                   2020-07-17
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       268.218
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    2M8
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       3ZU6
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 EBI
#   #
loop_
_pdbx_chem_comp_synonyms.ordinal
_pdbx_chem_comp_synonyms.comp_id
_pdbx_chem_comp_synonyms.name
_pdbx_chem_comp_synonyms.provenance
_pdbx_chem_comp_synonyms.type
1  2M8  2-O-ALPHA-MANNOSYL-D-GLYCERATE                          PDB  ?  
2  2M8  "(2R)-3-hydroxy-2-(alpha-D-mannosyloxy)propanoic acid"  PDB  ?  
3  2M8  "(2R)-3-hydroxy-2-(D-mannosyloxy)propanoic acid"        PDB  ?  
4  2M8  "(2R)-3-hydroxy-2-(mannosyloxy)propanoic acid"          PDB  ?  
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
2M8  C1    C1    C  0  1  N  N  R  19.238  55.080  29.074  -0.027  -0.649  -0.819  C1    2M8   1  
2M8  O1    O3A   O  0  1  N  N  N  18.330  54.892  30.153  -0.886  -0.392   0.294  O1    2M8   2  
2M8  C22   C22   C  0  1  N  N  R  17.323  55.906  30.266  -2.007   0.438  -0.017  C22   2M8   3  
2M8  C23   C23   C  0  1  N  N  N  16.645  55.779  31.626  -2.406   1.242   1.222  C23   2M8   4  
2M8  O13   O13   O  0  1  N  N  N  15.883  54.565  31.632  -2.865   0.351   2.241  O13   2M8   5  
2M8  C21   C21   C  0  1  N  N  N  16.279  55.780  29.192  -3.165  -0.424  -0.450  C21   2M8   6  
2M8  O1A   O1A   O  0  1  N  N  N  16.013  54.631  28.793  -3.074  -1.628  -0.402  O1A   2M8   7  
2M8  O1B   O1B   O  0  1  N  N  N  15.407  56.671  29.157  -4.299   0.146  -0.888  O1B   2M8   8  
2M8  C2    C2    C  0  1  N  N  S  20.552  54.371  29.385   0.985  -1.734  -0.443  C2    2M8   9  
2M8  O2    O2    O  0  1  N  N  N  21.377  54.390  28.213   1.811  -2.029  -1.571  O2    2M8  10  
2M8  C3    C3    C  0  1  N  N  S  21.315  55.082  30.488   1.857  -1.229   0.711  C3    2M8  11  
2M8  O3    O3    O  0  1  N  N  N  22.600  54.490  30.633   2.853  -2.206   1.020  O3    2M8  12  
2M8  C4    C4    C  0  1  N  N  S  21.543  56.531  30.073   2.536   0.078   0.290  C4    2M8  13  
2M8  O4    O4    O  0  1  N  N  N  22.226  57.287  31.089   3.295   0.596   1.385  O4    2M8  14  
2M8  C5    C5    C  0  1  N  N  R  20.211  57.201  29.808   1.463   1.093  -0.114  C5    2M8  15  
2M8  C6    C6    C  0  1  N  N  N  20.468  58.632  29.331   2.135   2.382  -0.593  C6    2M8  16  
2M8  O6    O6    O  0  1  N  N  N  19.244  59.378  29.347   1.137   3.369  -0.860  O6    2M8  17  
2M8  O5    O5    O  0  1  N  N  N  19.446  56.477  28.827   0.669   0.549  -1.170  O5    2M8  18  
2M8  H1    H1    H  0  1  N  N  N  18.811  54.643  28.159  -0.622  -0.986  -1.668  H1    2M8  19  
2M8  H2    H2    H  0  1  N  N  N  20.317  53.345  29.705   0.456  -2.635  -0.133  H2    2M8  20  
2M8  H22   H22   H  0  1  N  N  N  17.812  56.885  30.156  -1.742   1.121  -0.823  H22   2M8  21  
2M8  H231  H231  H  0  0  N  N  N  17.404  55.749  32.422  -1.542   1.798   1.588  H231  2M8  22  
2M8  H232  H232  H  0  0  N  N  N  15.981  56.639  31.796  -3.202   1.939   0.963  H232  2M8  23  
2M8  H13   H13   H  0  1  N  N  N  15.732  54.281  30.738  -3.135   0.793   3.058  H13   2M8  24  
2M8  H1B   H1B   H  0  1  N  N  N  14.602  56.313  28.802  -5.014  -0.448  -1.155  H1B   2M8  25  
2M8  HO2   HA    H  0  1  N  Y  N  22.199  53.950  28.397   1.323  -2.349  -2.342  HO2   2M8  26  
2M8  H3    H3    H  0  1  N  N  N  20.741  55.013  31.424   1.235  -1.052   1.589  H3    2M8  27  
2M8  HO3   HB    H  0  1  N  Y  N  23.078  54.935  31.323   2.494  -3.063   1.289  HO3   2M8  28  
2M8  H4    H4    H  0  1  N  N  N  22.168  56.511  29.168   3.197  -0.110  -0.555  H4    2M8  29  
2M8  HO4   HC    H  0  1  N  Y  N  22.348  58.181  30.791   3.991   0.002   1.697  HO4   2M8  30  
2M8  H5    H5    H  0  1  N  N  N  19.624  57.213  30.738   0.827   1.312   0.744  H5    2M8  31  
2M8  H61   H61C  H  0  1  N  N  N  21.197  59.113  30.000   2.810   2.748   0.180  H61   2M8  32  
2M8  H62   H62C  H  0  1  N  N  N  20.867  58.608  28.306   2.700   2.180  -1.504  H62   2M8  33  
2M8  HO6   H6    H  0  1  N  Y  N  19.409  60.265  29.050   1.491   4.214  -1.169  HO6   2M8  34  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
2M8  C1   O1    SING  N  N   1  
2M8  C1   C2    SING  N  N   2  
2M8  C1   O5    SING  N  N   3  
2M8  O1   C22   SING  N  N   4  
2M8  C22  C23   SING  N  N   5  
2M8  C22  C21   SING  N  N   6  
2M8  C23  O13   SING  N  N   7  
2M8  C21  O1A   DOUB  N  N   8  
2M8  C21  O1B   SING  N  N   9  
2M8  C2   O2    SING  N  N  10  
2M8  C2   C3    SING  N  N  11  
2M8  C3   O3    SING  N  N  12  
2M8  C3   C4    SING  N  N  13  
2M8  C4   O4    SING  N  N  14  
2M8  C4   C5    SING  N  N  15  
2M8  C5   C6    SING  N  N  16  
2M8  C5   O5    SING  N  N  17  
2M8  C6   O6    SING  N  N  18  
2M8  C1   H1    SING  N  N  19  
2M8  C2   H2    SING  N  N  20  
2M8  C22  H22   SING  N  N  21  
2M8  C23  H231  SING  N  N  22  
2M8  C23  H232  SING  N  N  23  
2M8  O13  H13   SING  N  N  24  
2M8  O1B  H1B   SING  N  N  25  
2M8  O2   HO2   SING  N  N  26  
2M8  C3   H3    SING  N  N  27  
2M8  O3   HO3   SING  N  N  28  
2M8  C4   H4    SING  N  N  29  
2M8  O4   HO4   SING  N  N  30  
2M8  C5   H5    SING  N  N  31  
2M8  C6   H61   SING  N  N  32  
2M8  C6   H62   SING  N  N  33  
2M8  O6   HO6   SING  N  N  34  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
2M8  SMILES            ACDLabs               12.01  "O=C(O)C(OC1OC(C(O)C(O)C1O)CO)CO"  
2M8  InChI             InChI                 1.03   "InChI=1S/C9H16O9/c10-1-3-5(12)6(13)7(14)9(17-3)18-4(2-11)8(15)16/h3-7,9-14H,1-2H2,(H,15,16)/t3-,4-,5-,6+,7+,9-/m1/s1"  
2M8  InChIKey          InChI                 1.03   DDXCFDOPXBPUJC-SAYMMRJXSA-N  
2M8  SMILES_CANONICAL  CACTVS                3.370  "OC[C@H]1O[C@H](O[C@H](CO)C(O)=O)[C@@H](O)[C@@H](O)[C@@H]1O"  
2M8  SMILES            CACTVS                3.370  "OC[CH]1O[CH](O[CH](CO)C(O)=O)[CH](O)[CH](O)[CH]1O"  
2M8  SMILES_CANONICAL  "OpenEye OEToolkits"  1.7.2  "C([C@@H]1[C@H]([C@@H]([C@@H]([C@H](O1)O[C@H](CO)C(=O)O)O)O)O)O"  
2M8  SMILES            "OpenEye OEToolkits"  1.7.2  "C(C1C(C(C(C(O1)OC(CO)C(=O)O)O)O)O)O"  
#   #
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
2M8  "SYSTEMATIC NAME"  ACDLabs               12.01  "(2R)-3-hydroxy-2-(alpha-D-mannopyranosyloxy)propanoic acid"  
2M8  "SYSTEMATIC NAME"  "OpenEye OEToolkits"  1.7.2  "(2R)-2-[(2R,3S,4S,5S,6R)-6-(hydroxymethyl)-3,4,5-tris(oxidanyl)oxan-2-yl]oxy-3-oxidanyl-propanoic acid"  
#
_pdbx_chem_comp_related.comp_id            2M8
_pdbx_chem_comp_related.related_comp_id    MAN
_pdbx_chem_comp_related.relationship_type  "Carbohydrate core"
_pdbx_chem_comp_related.details            ?
#   #
loop_
_pdbx_chem_comp_atom_related.ordinal
_pdbx_chem_comp_atom_related.comp_id
_pdbx_chem_comp_atom_related.atom_id
_pdbx_chem_comp_atom_related.related_comp_id
_pdbx_chem_comp_atom_related.related_atom_id
_pdbx_chem_comp_atom_related.related_type
 1  2M8  C1   MAN  C1   "Carbohydrate core"  
 2  2M8  C2   MAN  C2   "Carbohydrate core"  
 3  2M8  C3   MAN  C3   "Carbohydrate core"  
 4  2M8  C4   MAN  C4   "Carbohydrate core"  
 5  2M8  C5   MAN  C5   "Carbohydrate core"  
 6  2M8  C6   MAN  C6   "Carbohydrate core"  
 7  2M8  O2   MAN  O2   "Carbohydrate core"  
 8  2M8  O3   MAN  O3   "Carbohydrate core"  
 9  2M8  O1   MAN  O1   "Carbohydrate core"  
10  2M8  O4   MAN  O4   "Carbohydrate core"  
11  2M8  O5   MAN  O5   "Carbohydrate core"  
12  2M8  O6   MAN  O6   "Carbohydrate core"  
13  2M8  H1   MAN  H1   "Carbohydrate core"  
14  2M8  H2   MAN  H2   "Carbohydrate core"  
15  2M8  H3   MAN  H3   "Carbohydrate core"  
16  2M8  H4   MAN  H4   "Carbohydrate core"  
17  2M8  H5   MAN  H5   "Carbohydrate core"  
18  2M8  HO6  MAN  HO6  "Carbohydrate core"  
19  2M8  H61  MAN  H61  "Carbohydrate core"  
20  2M8  H62  MAN  H62  "Carbohydrate core"  
21  2M8  HO2  MAN  HO2  "Carbohydrate core"  
22  2M8  HO3  MAN  HO3  "Carbohydrate core"  
23  2M8  HO4  MAN  HO4  "Carbohydrate core"  
#   #
loop_
_pdbx_chem_comp_feature.comp_id
_pdbx_chem_comp_feature.type
_pdbx_chem_comp_feature.value
_pdbx_chem_comp_feature.source
_pdbx_chem_comp_feature.support
2M8  "CARBOHYDRATE ISOMER"                  D         PDB  ?  
2M8  "CARBOHYDRATE RING"                    pyranose  PDB  ?  
2M8  "CARBOHYDRATE ANOMER"                  alpha     PDB  ?  
2M8  "CARBOHYDRATE PRIMARY CARBONYL GROUP"  aldose    PDB  ?  
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
2M8  "Create component"          2011-07-14  EBI   
2M8  "Other modification"        2014-05-14  EBI   
2M8  "Other modification"        2020-07-03  RCSB  
2M8  "Modify parent residue"     2020-07-17  RCSB  
2M8  "Modify name"               2020-07-17  RCSB  
2M8  "Modify synonyms"           2020-07-17  RCSB  
2M8  "Modify internal type"      2020-07-17  RCSB  
2M8  "Modify linking type"       2020-07-17  RCSB  
2M8  "Modify atom id"            2020-07-17  RCSB  
2M8  "Modify component atom id"  2020-07-17  RCSB  
2M8  "Modify leaving atom flag"  2020-07-17  RCSB  
##
