data_2F8
#

_chem_comp.id                                   2F8
_chem_comp.name                                 "methyl 2-acetamido-2-deoxy-alpha-D-glucopyranoside"
_chem_comp.type                                 D-saccharide
_chem_comp.pdbx_type                            ATOMS
_chem_comp.formula                              "C9 H17 N O6"
_chem_comp.mon_nstd_parent_comp_id              NDG
_chem_comp.pdbx_synonyms                        
;methyl 2-(acetylamino)-2-deoxy-alpha-D-glucopyranoside; methyl 2-acetamido-2-deoxy-alpha-D-glucoside; methyl
2-acetamido-2-deoxy-D-glucoside; methyl 2-acetamido-2-deoxy-glucoside
;

_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2013-10-08
_chem_comp.pdbx_modified_date                   2020-07-17
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       235.234
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    2F8
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       4N32
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 RCSB
#   #
loop_
_pdbx_chem_comp_synonyms.ordinal
_pdbx_chem_comp_synonyms.comp_id
_pdbx_chem_comp_synonyms.name
_pdbx_chem_comp_synonyms.provenance
_pdbx_chem_comp_synonyms.type
1  2F8  "methyl 2-(acetylamino)-2-deoxy-alpha-D-glucopyranoside"  PDB  ?  
2  2F8  "methyl 2-acetamido-2-deoxy-alpha-D-glucoside"            PDB  ?  
3  2F8  "methyl 2-acetamido-2-deoxy-D-glucoside"                  PDB  ?  
4  2F8  "methyl 2-acetamido-2-deoxy-glucoside"                    PDB  ?  
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
2F8  O6   O6   O  0  1  N  N  N  33.849  43.532   3.032   3.946   1.342  -0.538  O6   2F8   1  
2F8  C6   C6   C  0  1  N  N  N  33.030  42.544   3.662   3.355   0.052  -0.707  C6   2F8   2  
2F8  C5   C5   C  0  1  N  N  R  32.563  43.078   5.009   1.970   0.036  -0.056  C5   2F8   3  
2F8  O5   O5   O  0  1  N  N  N  31.619  44.134   4.799   1.107   0.939  -0.750  O5   2F8   4  
2F8  C1   C1   C  0  1  N  N  S  31.054  44.692   5.999  -0.211   1.022  -0.205  C1   2F8   5  
2F8  O1   O1   O  0  1  N  N  N  31.992  45.548   6.659  -0.137   1.441   1.159  O1   2F8   6  
2F8  CM   CM   C  0  1  N  N  N  32.615  46.487   5.781   0.264   2.802   1.329  CM   2F8   7  
2F8  C2   C2   C  0  1  N  N  R  30.529  43.620   6.970  -0.880  -0.353  -0.282  C2   2F8   8  
2F8  N2   N2   N  0  1  N  N  N  30.143  44.233   8.228  -2.209  -0.286   0.330  N2   2F8   9  
2F8  C7   C7   C  0  1  N  N  N  28.913  44.191   8.738  -3.266   0.125  -0.398  C7   2F8  10  
2F8  O7   O7   O  0  1  N  N  N  28.009  43.524   8.262  -3.117   0.439  -1.560  O7   2F8  11  
2F8  C8   C8   C  0  1  N  N  N  28.707  45.022   9.968  -4.634   0.194   0.232  C8   2F8  12  
2F8  C3   C3   C  0  1  N  N  R  31.556  42.524   7.209  -0.021  -1.373   0.472  C3   2F8  13  
2F8  O3   O3   O  0  1  N  N  N  30.985  41.468   8.000  -0.599  -2.673   0.344  O3   2F8  14  
2F8  C4   C4   C  0  1  N  N  S  31.958  41.968   5.860   1.389  -1.378  -0.127  C4   2F8  15  
2F8  O4   O4   O  0  1  N  N  N  32.912  40.919   6.041   2.220  -2.273   0.615  O4   2F8  16  
2F8  HO6  H1   H  0  1  N  Y  N  34.146  43.208   2.190   4.827   1.425  -0.927  HO6  2F8  17  
2F8  H61  H2   H  0  1  N  N  N  32.158  42.328   3.028   3.259  -0.168  -1.770  H61  2F8  18  
2F8  H62  H3   H  0  1  N  N  N  33.612  41.622   3.811   3.987  -0.701  -0.236  H62  2F8  19  
2F8  H5   H4   H  0  1  N  N  N  33.440  43.476   5.541   2.055   0.343   0.986  H5   2F8  20  
2F8  H1   H5   H  0  1  N  N  N  30.187  45.303   5.708  -0.796   1.743  -0.776  H1   2F8  21  
2F8  H6   H6   H  0  1  N  N  N  33.320  47.110   6.350  -0.451   3.456   0.829  H6   2F8  22  
2F8  H7   H7   H  0  1  N  N  N  33.158  45.946   4.992   0.295   3.042   2.391  H7   2F8  23  
2F8  H8   H8   H  0  1  N  N  N  31.846  47.128   5.324   1.253   2.946   0.894  H8   2F8  24  
2F8  H2   H9   H  0  1  N  N  N  29.641  43.159   6.512  -0.973  -0.655  -1.325  H2   2F8  25  
2F8  HN2  H10  H  0  1  N  N  N  30.847  44.719   8.746  -2.329  -0.537   1.260  HN2  2F8  26  
2F8  H81  H11  H  0  1  N  N  N  27.669  44.913  10.315  -4.571  -0.123   1.272  H81  2F8  27  
2F8  H82  H12  H  0  1  N  N  N  29.395  44.685  10.757  -5.003   1.219   0.186  H82  2F8  28  
2F8  H83  H13  H  0  1  N  N  N  28.906  46.078   9.734  -5.316  -0.462  -0.308  H83  2F8  29  
2F8  H3   H14  H  0  1  N  N  N  32.438  42.950   7.710   0.031  -1.099   1.526  H3   2F8  30  
2F8  HO3  H15  H  0  1  N  Y  N  30.730  41.810   8.849  -0.106  -3.370   0.798  HO3  2F8  31  
2F8  H4   H16  H  0  1  N  N  N  31.062  41.581   5.352   1.343  -1.702  -1.167  H4   2F8  32  
2F8  HO4  H17  H  0  1  N  Y  N  32.529  40.230   6.572   3.131  -2.323   0.293  HO4  2F8  33  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
2F8  O6  C6   SING  N  N   1  
2F8  C6  C5   SING  N  N   2  
2F8  O5  C5   SING  N  N   3  
2F8  O5  C1   SING  N  N   4  
2F8  C5  C4   SING  N  N   5  
2F8  CM  O1   SING  N  N   6  
2F8  C4  O4   SING  N  N   7  
2F8  C4  C3   SING  N  N   8  
2F8  C1  O1   SING  N  N   9  
2F8  C1  C2   SING  N  N  10  
2F8  C2  C3   SING  N  N  11  
2F8  C2  N2   SING  N  N  12  
2F8  C3  O3   SING  N  N  13  
2F8  N2  C7   SING  N  N  14  
2F8  O7  C7   DOUB  N  N  15  
2F8  C7  C8   SING  N  N  16  
2F8  O6  HO6  SING  N  N  17  
2F8  C6  H61  SING  N  N  18  
2F8  C6  H62  SING  N  N  19  
2F8  C5  H5   SING  N  N  20  
2F8  C1  H1   SING  N  N  21  
2F8  CM  H6   SING  N  N  22  
2F8  CM  H7   SING  N  N  23  
2F8  CM  H8   SING  N  N  24  
2F8  C2  H2   SING  N  N  25  
2F8  N2  HN2  SING  N  N  26  
2F8  C8  H81  SING  N  N  27  
2F8  C8  H82  SING  N  N  28  
2F8  C8  H83  SING  N  N  29  
2F8  C3  H3   SING  N  N  30  
2F8  O3  HO3  SING  N  N  31  
2F8  C4  H4   SING  N  N  32  
2F8  O4  HO4  SING  N  N  33  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
2F8  SMILES            ACDLabs               12.01  "O=C(NC1C(O)C(O)C(OC1OC)CO)C"  
2F8  InChI             InChI                 1.03   "InChI=1S/C9H17NO6/c1-4(12)10-6-8(14)7(13)5(3-11)16-9(6)15-2/h5-9,11,13-14H,3H2,1-2H3,(H,10,12)/t5-,6-,7-,8-,9+/m1/s1"  
2F8  InChIKey          InChI                 1.03   ZEVOCXOZYFLVKN-OKNNCHMLSA-N  
2F8  SMILES_CANONICAL  CACTVS                3.385  "CO[C@H]1O[C@H](CO)[C@@H](O)[C@H](O)[C@H]1NC(C)=O"  
2F8  SMILES            CACTVS                3.385  "CO[CH]1O[CH](CO)[CH](O)[CH](O)[CH]1NC(C)=O"  
2F8  SMILES_CANONICAL  "OpenEye OEToolkits"  1.7.6  "CC(=O)N[C@@H]1[C@H]([C@@H]([C@H](O[C@@H]1OC)CO)O)O"  
2F8  SMILES            "OpenEye OEToolkits"  1.7.6  "CC(=O)NC1C(C(C(OC1OC)CO)O)O"  
#   #
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
2F8  "SYSTEMATIC NAME"                      ACDLabs               12.01  "methyl 2-(acetylamino)-2-deoxy-alpha-D-glucopyranoside"  
2F8  "SYSTEMATIC NAME"                      "OpenEye OEToolkits"  1.7.6  "N-[(2S,3R,4R,5S,6R)-6-(hydroxymethyl)-2-methoxy-4,5-bis(oxidanyl)oxan-3-yl]ethanamide"  
2F8  "CONDENSED IUPAC CARBOHYDRATE SYMBOL"  GMML                  1.0    DGlcpNAc[1Me]a  
2F8  "COMMON NAME"                          GMML                  1.0    1-methyl-N-acetyl-a-D-glucopyranose  
#
_pdbx_chem_comp_related.comp_id            2F8
_pdbx_chem_comp_related.related_comp_id    NDG
_pdbx_chem_comp_related.relationship_type  "Carbohydrate core"
_pdbx_chem_comp_related.details            ?
#   #
loop_
_pdbx_chem_comp_atom_related.ordinal
_pdbx_chem_comp_atom_related.comp_id
_pdbx_chem_comp_atom_related.atom_id
_pdbx_chem_comp_atom_related.related_comp_id
_pdbx_chem_comp_atom_related.related_atom_id
_pdbx_chem_comp_atom_related.related_type
 1  2F8  C1   NDG  C1   "Carbohydrate core"  
 2  2F8  C2   NDG  C2   "Carbohydrate core"  
 3  2F8  C3   NDG  C3   "Carbohydrate core"  
 4  2F8  C4   NDG  C4   "Carbohydrate core"  
 5  2F8  C5   NDG  C5   "Carbohydrate core"  
 6  2F8  C6   NDG  C6   "Carbohydrate core"  
 7  2F8  C7   NDG  C7   "Carbohydrate core"  
 8  2F8  C8   NDG  C8   "Carbohydrate core"  
 9  2F8  N2   NDG  N2   "Carbohydrate core"  
10  2F8  O1   NDG  O1   "Carbohydrate core"  
11  2F8  O3   NDG  O3   "Carbohydrate core"  
12  2F8  O4   NDG  O4   "Carbohydrate core"  
13  2F8  O5   NDG  O5   "Carbohydrate core"  
14  2F8  O6   NDG  O6   "Carbohydrate core"  
15  2F8  O7   NDG  O7   "Carbohydrate core"  
16  2F8  HO6  NDG  HO6  "Carbohydrate core"  
17  2F8  HN2  NDG  HN2  "Carbohydrate core"  
18  2F8  H81  NDG  H81  "Carbohydrate core"  
19  2F8  H82  NDG  H82  "Carbohydrate core"  
20  2F8  H83  NDG  H83  "Carbohydrate core"  
21  2F8  H3   NDG  H3   "Carbohydrate core"  
22  2F8  HO3  NDG  HO3  "Carbohydrate core"  
23  2F8  H4   NDG  H4   "Carbohydrate core"  
24  2F8  HO4  NDG  HO4  "Carbohydrate core"  
25  2F8  H61  NDG  H61  "Carbohydrate core"  
26  2F8  H62  NDG  H62  "Carbohydrate core"  
27  2F8  H5   NDG  H5   "Carbohydrate core"  
28  2F8  H1   NDG  H1   "Carbohydrate core"  
29  2F8  H2   NDG  H2   "Carbohydrate core"  
#   #
loop_
_pdbx_chem_comp_feature.comp_id
_pdbx_chem_comp_feature.type
_pdbx_chem_comp_feature.value
_pdbx_chem_comp_feature.source
_pdbx_chem_comp_feature.support
2F8  "CARBOHYDRATE ISOMER"                  D         PDB  ?  
2F8  "CARBOHYDRATE RING"                    pyranose  PDB  ?  
2F8  "CARBOHYDRATE ANOMER"                  alpha     PDB  ?  
2F8  "CARBOHYDRATE PRIMARY CARBONYL GROUP"  aldose    PDB  ?  
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
2F8  "Create component"          2013-10-08  RCSB  
2F8  "Modify internal type"      2013-11-11  RCSB  
2F8  "Initial release"           2013-11-20  RCSB  
2F8  "Other modification"        2020-07-03  RCSB  
2F8  "Modify parent residue"     2020-07-17  RCSB  
2F8  "Modify name"               2020-07-17  RCSB  
2F8  "Modify synonyms"           2020-07-17  RCSB  
2F8  "Modify linking type"       2020-07-17  RCSB  
2F8  "Modify atom id"            2020-07-17  RCSB  
2F8  "Modify component atom id"  2020-07-17  RCSB  
2F8  "Modify leaving atom flag"  2020-07-17  RCSB  
##
