data_YR7
#

_chem_comp.id                                   YR7
_chem_comp.name                                 "2-(butylamino)-N-[1-(3-fluoropropyl)piperidin-4-yl]-4-{[(1r,4r)-4-hydroxycyclohexyl]amino}pyrimidine-5-carboxamide"
_chem_comp.type                                 non-polymer
_chem_comp.pdbx_type                            HETAIN
_chem_comp.formula                              "C23 H39 F N6 O2"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        ?
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2021-03-25
_chem_comp.pdbx_modified_date                   2021-10-01
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       450.593
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    YR7
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       7M5Z
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 RCSB
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
YR7  C02  C1   C  0  1  N  N  N  -13.642  -14.966   9.362  -3.964  -5.112  -0.124  C02  YR7   1  
YR7  C03  C2   C  0  1  N  N  N  -13.150  -16.082  10.288  -4.557  -3.809  -0.665  C03  YR7   2  
YR7  C04  C3   C  0  1  N  N  N  -12.163  -16.999   9.572  -3.426  -2.844  -1.023  C04  YR7   3  
YR7  C05  C4   C  0  1  N  N  N  -14.328  -15.521   8.109  -3.132  -4.814   1.125  C05  YR7   4  
YR7  C06  C5   C  0  1  N  N  N  -13.378  -16.440   7.343  -2.001  -3.848   0.766  C06  YR7   5  
YR7  C07  C6   C  0  1  N  N  N  -12.727  -17.507   8.240  -2.594  -2.546   0.226  C07  YR7   6  
YR7  C09  C7   C  0  1  Y  N  N  -12.048  -19.419   6.930  -1.742  -0.262  -0.127  C09  YR7   7  
YR7  C10  C8   C  0  1  Y  N  N  -11.312  -19.954   5.902  -0.683   0.645  -0.345  C10  YR7   8  
YR7  C11  C9   C  0  1  N  N  N  -10.055  -19.178   5.424   0.690   0.165  -0.574  C11  YR7   9  
YR7  N12  N1   N  0  1  N  N  N   -9.330  -19.540   4.211   1.706   1.046  -0.666  N12  YR7  10  
YR7  C13  C10  C  0  1  N  N  N   -8.156  -18.667   3.996   3.072   0.567  -0.894  C13  YR7  11  
YR7  C14  C11  C  0  1  N  N  N   -7.074  -19.532   3.607   3.896   1.673  -1.559  C14  YR7  12  
YR7  C15  C12  C  0  1  N  N  N   -7.077  -19.688   2.089   5.337   1.189  -1.738  C15  YR7  13  
YR7  C17  C13  C  0  1  N  N  N   -5.527  -18.345   1.406   7.333   0.513  -0.546  C17  YR7  14  
YR7  C18  C14  C  0  1  N  N  N   -5.086  -18.884   0.040   7.949   0.409   0.850  C18  YR7  15  
YR7  C19  C15  C  0  1  N  N  N   -3.568  -18.858  -0.084   9.434   0.059   0.728  C19  YR7  16  
YR7  C21  C16  C  0  1  N  N  N   -7.298  -17.262   2.112   5.160  -0.244   0.208  C21  YR7  17  
YR7  C22  C17  C  0  1  N  N  N   -8.443  -17.576   3.087   3.714   0.197   0.446  C22  YR7  18  
YR7  C24  C18  C  0  1  Y  N  N  -11.724  -21.181   5.400  -0.973   2.014  -0.338  C24  YR7  19  
YR7  C26  C19  C  0  1  Y  N  N  -13.481  -21.197   6.859  -3.189   1.523   0.071  C26  YR7  20  
YR7  C28  C20  C  0  1  N  N  N  -15.371  -20.974   8.427  -4.747   3.420   0.285  C28  YR7  21  
YR7  C29  C21  C  0  1  N  N  N  -16.551  -20.217   7.785  -6.237   3.655   0.542  C29  YR7  22  
YR7  C30  C22  C  0  1  N  N  N  -17.417  -19.536   8.854  -6.523   5.158   0.543  C30  YR7  23  
YR7  C31  C23  C  0  1  N  N  N  -16.542  -18.870   9.924  -8.013   5.393   0.800  C31  YR7  24  
YR7  F20  F1   F  0  1  N  N  N   -3.041  -19.389   1.058   9.997  -0.036   2.004  F20  YR7  25  
YR7  N08  N2   N  0  1  N  N  N  -11.659  -18.155   7.495  -1.511  -1.621  -0.118  N08  YR7  26  
YR7  N16  N3   N  0  1  N  N  N   -6.724  -18.431   1.483   5.908   0.849  -0.429  N16  YR7  27  
YR7  N25  N4   N  0  1  Y  N  N  -12.813  -21.779   5.879  -2.217   2.405  -0.130  N25  YR7  28  
YR7  N27  N5   N  0  1  N  N  N  -14.684  -21.810   7.429  -4.473   1.980   0.284  N27  YR7  29  
YR7  N32  N6   N  0  1  Y  N  N  -13.118  -20.038   7.382  -2.964   0.218   0.074  N32  YR7  30  
YR7  O01  O1   O  0  1  N  N  N  -14.531  -14.134  10.072  -5.020  -6.014   0.211  O01  YR7  31  
YR7  O23  O2   O  0  1  N  N  N   -9.647  -18.259   6.052   0.907  -1.027  -0.679  O23  YR7  32  
YR7  H1   H1   H  0  1  N  N  N  -12.767  -14.382   9.040  -3.327  -5.564  -0.885  H1   YR7  33  
YR7  H2   H2   H  0  1  N  N  N  -12.653  -15.632  11.160  -5.150  -4.022  -1.555  H2   YR7  34  
YR7  H3   H3   H  0  1  N  N  N  -14.013  -16.676  10.624  -5.194  -3.357   0.096  H3   YR7  35  
YR7  H4   H4   H  0  1  N  N  N  -11.944  -17.861  10.219  -2.790  -3.296  -1.784  H4   YR7  36  
YR7  H5   H5   H  0  1  N  N  N  -11.235  -16.441   9.377  -3.849  -1.916  -1.408  H5   YR7  37  
YR7  H6   H6   H  0  1  N  N  N  -14.626  -14.685   7.459  -3.769  -4.361   1.886  H6   YR7  38  
YR7  H7   H7   H  0  1  N  N  N  -15.221  -16.090   8.407  -2.709  -5.742   1.510  H7   YR7  39  
YR7  H8   H8   H  0  1  N  N  N  -13.945  -16.947   6.548  -1.409  -3.636   1.656  H8   YR7  40  
YR7  H9   H9   H  0  1  N  N  N  -12.583  -15.827   6.893  -1.365  -4.301   0.006  H9   YR7  41  
YR7  H10  H10  H  0  1  N  N  N  -13.497  -18.258   8.471  -3.231  -2.093   0.986  H10  YR7  42  
YR7  H11  H11  H  0  1  N  N  N   -9.594  -20.286   3.600   1.532   1.997  -0.582  H11  YR7  43  
YR7  H12  H12  H  0  1  N  N  N   -7.897  -18.227   4.970   3.047  -0.309  -1.541  H12  YR7  44  
YR7  H13  H13  H  0  1  N  N  N   -7.203  -20.517   4.078   3.468   1.910  -2.533  H13  YR7  45  
YR7  H14  H14  H  0  1  N  N  N   -6.118  -19.094   3.930   3.886   2.563  -0.930  H14  YR7  46  
YR7  H15  H15  H  0  1  N  N  N   -8.080  -19.990   1.752   5.347   0.307  -2.379  H15  YR7  47  
YR7  H16  H16  H  0  1  N  N  N   -6.345  -20.456   1.797   5.931   1.979  -2.199  H16  YR7  48  
YR7  H17  H17  H  0  1  N  N  N   -5.060  -18.938   2.207   7.844   1.291  -1.112  H17  YR7  49  
YR7  H18  H18  H  0  1  N  N  N   -5.224  -17.292   1.505   7.439  -0.441  -1.062  H18  YR7  50  
YR7  H19  H19  H  0  1  N  N  N   -5.524  -18.260  -0.753   7.842   1.363   1.366  H19  YR7  51  
YR7  H20  H20  H  0  1  N  N  N   -5.440  -19.920  -0.071   7.438  -0.370   1.416  H20  YR7  52  
YR7  H21  H21  H  0  1  N  N  N   -3.254  -19.456  -0.953   9.540  -0.896   0.211  H21  YR7  53  
YR7  H22  H22  H  0  1  N  N  N   -3.222  -17.821  -0.208   9.945   0.837   0.162  H22  YR7  54  
YR7  H23  H23  H  0  1  N  N  N   -6.503  -16.743   2.668   5.624  -0.495   1.162  H23  YR7  55  
YR7  H24  H24  H  0  1  N  N  N   -7.687  -16.601   1.324   5.170  -1.119  -0.442  H24  YR7  56  
YR7  H25  H25  H  0  1  N  N  N   -8.649  -16.674   3.682   3.701   1.063   1.107  H25  YR7  57  
YR7  H26  H26  H  0  1  N  N  N   -9.335  -17.839   2.500   3.155  -0.619   0.904  H26  YR7  58  
YR7  H27  H27  H  0  1  N  N  N  -11.156  -21.655   4.613  -0.191   2.741  -0.501  H27  YR7  59  
YR7  H28  H28  H  0  1  N  N  N  -15.751  -21.616   9.236  -4.473   3.842  -0.681  H28  YR7  60  
YR7  H29  H29  H  0  1  N  N  N  -14.658  -20.246   8.841  -4.163   3.900   1.070  H29  YR7  61  
YR7  H30  H30  H  0  1  N  N  N  -16.157  -19.451   7.100  -6.821   3.174  -0.243  H30  YR7  62  
YR7  H31  H31  H  0  1  N  N  N  -17.171  -20.929   7.221  -6.510   3.232   1.508  H31  YR7  63  
YR7  H32  H32  H  0  1  N  N  N  -18.045  -18.771   8.375  -5.939   5.638   1.328  H32  YR7  64  
YR7  H33  H33  H  0  1  N  N  N  -18.059  -20.291   9.332  -6.249   5.581  -0.424  H33  YR7  65  
YR7  H34  H34  H  0  1  N  N  N  -17.184  -18.390  10.677  -8.217   6.464   0.801  H34  YR7  66  
YR7  H35  H35  H  0  1  N  N  N  -15.914  -19.631  10.410  -8.597   4.912   0.014  H35  YR7  67  
YR7  H36  H36  H  0  1  N  N  N  -15.900  -18.111   9.452  -8.286   4.970   1.766  H36  YR7  68  
YR7  H37  H37  H  0  1  N  N  N  -10.888  -18.307   8.113  -0.632  -1.965  -0.338  H37  YR7  69  
YR7  H39  H39  H  0  1  N  N  N  -15.324  -21.998   6.684  -5.194   1.349   0.433  H39  YR7  70  
YR7  H40  H40  H  0  1  N  N  N  -14.098  -13.795  10.846  -4.717  -6.863   0.561  H40  YR7  71  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
YR7  C19  C18  SING  N  N   1  
YR7  C19  F20  SING  N  N   2  
YR7  C18  C17  SING  N  N   3  
YR7  C17  N16  SING  N  N   4  
YR7  N16  C15  SING  N  N   5  
YR7  N16  C21  SING  N  N   6  
YR7  C15  C14  SING  N  N   7  
YR7  C21  C22  SING  N  N   8  
YR7  C22  C13  SING  N  N   9  
YR7  C14  C13  SING  N  N  10  
YR7  C13  N12  SING  N  N  11  
YR7  N12  C11  SING  N  N  12  
YR7  C24  N25  DOUB  Y  N  13  
YR7  C24  C10  SING  Y  N  14  
YR7  C11  C10  SING  N  N  15  
YR7  C11  O23  DOUB  N  N  16  
YR7  N25  C26  SING  Y  N  17  
YR7  C10  C09  DOUB  Y  N  18  
YR7  C26  N32  DOUB  Y  N  19  
YR7  C26  N27  SING  N  N  20  
YR7  C09  N32  SING  Y  N  21  
YR7  C09  N08  SING  N  N  22  
YR7  C06  C05  SING  N  N  23  
YR7  C06  C07  SING  N  N  24  
YR7  N27  C28  SING  N  N  25  
YR7  N08  C07  SING  N  N  26  
YR7  C29  C28  SING  N  N  27  
YR7  C29  C30  SING  N  N  28  
YR7  C05  C02  SING  N  N  29  
YR7  C07  C04  SING  N  N  30  
YR7  C30  C31  SING  N  N  31  
YR7  C02  O01  SING  N  N  32  
YR7  C02  C03  SING  N  N  33  
YR7  C04  C03  SING  N  N  34  
YR7  C02  H1   SING  N  N  35  
YR7  C03  H2   SING  N  N  36  
YR7  C03  H3   SING  N  N  37  
YR7  C04  H4   SING  N  N  38  
YR7  C04  H5   SING  N  N  39  
YR7  C05  H6   SING  N  N  40  
YR7  C05  H7   SING  N  N  41  
YR7  C06  H8   SING  N  N  42  
YR7  C06  H9   SING  N  N  43  
YR7  C07  H10  SING  N  N  44  
YR7  N12  H11  SING  N  N  45  
YR7  C13  H12  SING  N  N  46  
YR7  C14  H13  SING  N  N  47  
YR7  C14  H14  SING  N  N  48  
YR7  C15  H15  SING  N  N  49  
YR7  C15  H16  SING  N  N  50  
YR7  C17  H17  SING  N  N  51  
YR7  C17  H18  SING  N  N  52  
YR7  C18  H19  SING  N  N  53  
YR7  C18  H20  SING  N  N  54  
YR7  C19  H21  SING  N  N  55  
YR7  C19  H22  SING  N  N  56  
YR7  C21  H23  SING  N  N  57  
YR7  C21  H24  SING  N  N  58  
YR7  C22  H25  SING  N  N  59  
YR7  C22  H26  SING  N  N  60  
YR7  C24  H27  SING  N  N  61  
YR7  C28  H28  SING  N  N  62  
YR7  C28  H29  SING  N  N  63  
YR7  C29  H30  SING  N  N  64  
YR7  C29  H31  SING  N  N  65  
YR7  C30  H32  SING  N  N  66  
YR7  C30  H33  SING  N  N  67  
YR7  C31  H34  SING  N  N  68  
YR7  C31  H35  SING  N  N  69  
YR7  C31  H36  SING  N  N  70  
YR7  N08  H37  SING  N  N  71  
YR7  N27  H39  SING  N  N  72  
YR7  O01  H40  SING  N  N  73  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
YR7  SMILES            ACDLabs               12.01  "OC1CCC(CC1)Nc1nc(NCCCC)ncc1C(=O)NC1CCN(CCCF)CC1"  
YR7  InChI             InChI                 1.03   "InChI=1S/C23H39FN6O2/c1-2-3-12-25-23-26-16-20(21(29-23)27-17-5-7-19(31)8-6-17)22(32)28-18-9-14-30(15-10-18)13-4-11-24/h16-19,31H,2-15H2,1H3,(H,28,32)(H2,25,26,27,29)/t17-,19-"  
YR7  InChIKey          InChI                 1.03   KOWRWJFANSWOCN-UAPYVXQJSA-N  
YR7  SMILES_CANONICAL  CACTVS                3.385  "CCCCNc1ncc(C(=O)NC2CCN(CCCF)CC2)c(N[C@H]3CC[C@H](O)CC3)n1"  
YR7  SMILES            CACTVS                3.385  "CCCCNc1ncc(C(=O)NC2CCN(CCCF)CC2)c(N[CH]3CC[CH](O)CC3)n1"  
YR7  SMILES_CANONICAL  "OpenEye OEToolkits"  2.0.7  "CCCCNc1ncc(c(n1)NC2CCC(CC2)O)C(=O)NC3CCN(CC3)CCCF"  
YR7  SMILES            "OpenEye OEToolkits"  2.0.7  "CCCCNc1ncc(c(n1)NC2CCC(CC2)O)C(=O)NC3CCN(CC3)CCCF"  
#   #
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
YR7  "SYSTEMATIC NAME"  ACDLabs               12.01  "2-(butylamino)-N-[1-(3-fluoropropyl)piperidin-4-yl]-4-{[(1r,4r)-4-hydroxycyclohexyl]amino}pyrimidine-5-carboxamide"  
YR7  "SYSTEMATIC NAME"  "OpenEye OEToolkits"  2.0.7  "2-(butylamino)-~{N}-[1-(3-fluoranylpropyl)piperidin-4-yl]-4-[(4-oxidanylcyclohexyl)amino]pyrimidine-5-carboxamide"  
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
YR7  "Create component"  2021-03-25  RCSB  
YR7  "Initial release"   2021-10-06  RCSB  
##
