data_XP7
#

_chem_comp.id                                   XP7
_chem_comp.name                                 "(5S)-5-(3-{4-[(2-chloro-4-fluorophenoxy)methyl]piperidin-1-yl}-3-oxopropyl)pyrrolidin-2-one"
_chem_comp.type                                 non-polymer
_chem_comp.pdbx_type                            HETAIN
_chem_comp.formula                              "C19 H24 Cl F N2 O3"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        ?
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2020-12-23
_chem_comp.pdbx_modified_date                   2021-08-06
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       382.857
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    XP7
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       7L4U
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 RCSB
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
XP7  C4    C1   C   0  1  Y  N  N  28.618  116.027  280.010   4.477  -0.351  -0.123  C4    XP7   1  
XP7  C5    C2   C   0  1  Y  N  N  30.886  117.355  279.208   6.820  -1.749   0.341  C5    XP7   2  
XP7  C6    C3   C   0  1  Y  N  N  29.837  115.812  280.616   5.641   0.332   0.201  C6    XP7   3  
XP7  C7    C4   C   0  1  N  N  N  15.628  115.286  281.886  -7.348  -1.937   0.270  C7    XP7   4  
XP7  C8    C5   C   0  1  N  N  N  21.600  115.858  282.538  -2.873   1.472   0.155  C8    XP7   5  
XP7  C10   C6   C   0  1  N  N  N  17.284  116.786  281.196  -7.755   0.433   0.486  C10   XP7   6  
XP7  C13   C7   C   0  1  N  N  N  22.647  115.034  280.519  -0.530   2.179   0.184  C13   XP7   7  
XP7  C15   C8   C   0  1  N  N  N  25.163  115.124  280.547   0.978   0.507  -0.899  C15   XP7   8  
XP7  C17   C9   C   0  1  N  N  N  20.370  116.014  281.677  -4.011   0.701  -0.463  C17   XP7   9  
XP7  C1    C10  C   0  1  Y  N  N  28.523  116.920  278.974   4.488  -1.735  -0.209  C1    XP7  10  
XP7  C2    C11  C   0  1  Y  N  N  29.675  117.575  278.588   5.658  -2.432   0.023  C2    XP7  11  
XP7  C3    C12  C   0  1  Y  N  N  30.990  116.458  280.240   6.810  -0.368   0.432  C3    XP7  12  
XP7  C9    C13  C   0  1  N  N  N  15.800  116.566  281.091  -8.472  -0.936   0.420  C9    XP7  13  
XP7  C11   C14  C   0  1  N  N  N  23.884  115.488  279.798   0.638   1.214   0.415  C11   XP7  14  
XP7  C12   C15  C   0  1  N  N  N  25.134  115.677  281.957  -0.231  -0.303  -1.372  C12   XP7  15  
XP7  C14   C16  C   0  1  N  N  N  23.874  115.345  282.684  -1.409   0.645  -1.623  C14   XP7  16  
XP7  C16   C17  C   0  1  N  N  S  17.934  115.419  281.451  -6.436   0.132  -0.263  C16   XP7  17  
XP7  C18   C18  C   0  1  N  N  N  26.345  115.852  279.841   2.166  -0.432  -0.680  C18   XP7  18  
XP7  C19   C19  C   0  1  N  N  N  19.158  115.473  282.392  -5.280   0.914   0.365  C19   XP7  19  
XP7  N20   N1   N   0  1  N  N  N  16.855  114.655  282.017  -6.219  -1.311  -0.105  N20   XP7  20  
XP7  N21   N2   N   0  1  N  N  N  22.694  115.517  281.878  -1.649   1.433  -0.407  N21   XP7  21  
XP7  O22   O1   O   0  1  N  N  N  14.559  114.905  282.354  -7.449  -3.130   0.464  O22   XP7  22  
XP7  O23   O2   O   0  1  N  N  N  21.657  116.089  283.739  -3.059   2.126   1.160  O23   XP7  23  
XP7  O24   O3   O   0  1  N  N  N  27.526  115.338  280.462   3.325   0.336  -0.351  O24   XP7  24  
XP7  F25   F1   F   0  1  N  N  N  31.975  118.017  278.802   7.963  -2.432   0.567  F25   XP7  25  
XP7  CL26  CL1  CL  0  0  N  N  N  29.970  114.707  281.891   5.628   2.065   0.315  CL26  XP7  26  
XP7  H1    H1   H   0  1  N  N  N  17.668  117.216  280.259  -8.333   1.197  -0.034  H1    XP7  27  
XP7  H2    H2   H   0  1  N  N  N  17.505  117.469  282.030  -7.559   0.728   1.517  H2    XP7  28  
XP7  H3    H3   H   0  1  N  N  N  21.757  115.437  280.014  -0.840   2.611   1.135  H3    XP7  29  
XP7  H4    H4   H   0  1  N  N  N  22.602  113.935  280.519  -0.221   2.974  -0.495  H4    XP7  30  
XP7  H5    H5   H   0  1  N  N  N  25.324  114.036  280.549   1.236   1.249  -1.655  H5    XP7  31  
XP7  H6    H6   H   0  1  N  N  N  20.513  115.462  280.737  -4.178   1.054  -1.481  H6    XP7  32  
XP7  H7    H7   H   0  1  N  N  N  20.215  117.080  281.456  -3.763  -0.360  -0.482  H7    XP7  33  
XP7  H8    H8   H   0  1  N  N  N  27.581  117.104  278.478   3.582  -2.268  -0.457  H8    XP7  34  
XP7  H9    H9   H   0  1  N  N  N  29.626  118.283  277.774   5.666  -3.510  -0.044  H9    XP7  35  
XP7  H10   H10  H   0  1  N  N  N  31.932  116.269  280.733   7.717   0.163   0.681  H10   XP7  36  
XP7  H11   H11  H   0  1  N  N  N  15.238  117.397  281.541  -9.137  -0.977  -0.442  H11   XP7  37  
XP7  H12   H12  H   0  1  N  N  N  15.486  116.435  280.045  -9.027  -1.120   1.340  H12   XP7  38  
XP7  H13   H13  H   0  1  N  N  N  23.909  115.013  278.806   1.507   1.772   0.763  H13   XP7  39  
XP7  H14   H14  H   0  1  N  N  N  23.843  116.581  279.680   0.356   0.474   1.164  H14   XP7  40  
XP7  H15   H15  H   0  1  N  N  N  25.983  115.257  282.516   0.019  -0.825  -2.296  H15   XP7  41  
XP7  H16   H16  H   0  1  N  N  N  25.233  116.771  281.907  -0.505  -1.028  -0.606  H16   XP7  42  
XP7  H17   H17  H   0  1  N  N  N  23.795  116.000  283.564  -1.170   1.312  -2.451  H17   XP7  43  
XP7  H18   H18  H   0  1  N  N  N  23.925  114.296  283.011  -2.299   0.064  -1.867  H18   XP7  44  
XP7  H19   H19  H   0  1  N  N  N  18.245  114.986  280.489  -6.535   0.386  -1.318  H19   XP7  45  
XP7  H20   H20  H   0  1  N  N  N  26.273  116.939  279.990   1.941  -1.118   0.137  H20   XP7  46  
XP7  H21   H21  H   0  1  N  N  N  26.347  115.629  278.764   2.353  -1.000  -1.591  H21   XP7  47  
XP7  H22   H22  H   0  1  N  N  N  18.925  116.124  283.247  -5.113   0.561   1.383  H22   XP7  48  
XP7  H23   H23  H   0  1  N  N  N  19.378  114.458  282.754  -5.528   1.975   0.385  H23   XP7  49  
XP7  H24   H24  H   0  1  N  N  N  16.977  113.765  282.457  -5.369  -1.756  -0.252  H24   XP7  50  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
XP7  C2   C1    DOUB  Y  N   1  
XP7  C2   C5    SING  Y  N   2  
XP7  F25  C5    SING  N  N   3  
XP7  C1   C4    SING  Y  N   4  
XP7  C5   C3    DOUB  Y  N   5  
XP7  C11  C13   SING  N  N   6  
XP7  C11  C15   SING  N  N   7  
XP7  C18  O24   SING  N  N   8  
XP7  C18  C15   SING  N  N   9  
XP7  C4   O24   SING  N  N  10  
XP7  C4   C6    DOUB  Y  N  11  
XP7  C3   C6    SING  Y  N  12  
XP7  C13  N21   SING  N  N  13  
XP7  C15  C12   SING  N  N  14  
XP7  C6   CL26  SING  N  N  15  
XP7  C9   C10   SING  N  N  16  
XP7  C9   C7    SING  N  N  17  
XP7  C10  C16   SING  N  N  18  
XP7  C16  N20   SING  N  N  19  
XP7  C16  C19   SING  N  N  20  
XP7  C17  C19   SING  N  N  21  
XP7  C17  C8    SING  N  N  22  
XP7  N21  C8    SING  N  N  23  
XP7  N21  C14   SING  N  N  24  
XP7  C7   N20   SING  N  N  25  
XP7  C7   O22   DOUB  N  N  26  
XP7  C12  C14   SING  N  N  27  
XP7  C8   O23   DOUB  N  N  28  
XP7  C10  H1    SING  N  N  29  
XP7  C10  H2    SING  N  N  30  
XP7  C13  H3    SING  N  N  31  
XP7  C13  H4    SING  N  N  32  
XP7  C15  H5    SING  N  N  33  
XP7  C17  H6    SING  N  N  34  
XP7  C17  H7    SING  N  N  35  
XP7  C1   H8    SING  N  N  36  
XP7  C2   H9    SING  N  N  37  
XP7  C3   H10   SING  N  N  38  
XP7  C9   H11   SING  N  N  39  
XP7  C9   H12   SING  N  N  40  
XP7  C11  H13   SING  N  N  41  
XP7  C11  H14   SING  N  N  42  
XP7  C12  H15   SING  N  N  43  
XP7  C12  H16   SING  N  N  44  
XP7  C14  H17   SING  N  N  45  
XP7  C14  H18   SING  N  N  46  
XP7  C16  H19   SING  N  N  47  
XP7  C18  H20   SING  N  N  48  
XP7  C18  H21   SING  N  N  49  
XP7  C19  H22   SING  N  N  50  
XP7  C19  H23   SING  N  N  51  
XP7  N20  H24   SING  N  N  52  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
XP7  SMILES            ACDLabs               12.01  "c3(OCC2CCN(C(=O)CCC1CCC(N1)=O)CC2)c(Cl)cc(cc3)F"  
XP7  InChI             InChI                 1.03   "InChI=1S/C19H24ClFN2O3/c20-16-11-14(21)1-4-17(16)26-12-13-7-9-23(10-8-13)19(25)6-3-15-2-5-18(24)22-15/h1,4,11,13,15H,2-3,5-10,12H2,(H,22,24)/t15-/m0/s1"  
XP7  InChIKey          InChI                 1.03   AKWBGFHQJGRBNZ-HNNXBMFYSA-N  
XP7  SMILES_CANONICAL  CACTVS                3.385  "Fc1ccc(OCC2CCN(CC2)C(=O)CC[C@@H]3CCC(=O)N3)c(Cl)c1"  
XP7  SMILES            CACTVS                3.385  "Fc1ccc(OCC2CCN(CC2)C(=O)CC[CH]3CCC(=O)N3)c(Cl)c1"  
XP7  SMILES_CANONICAL  "OpenEye OEToolkits"  2.0.7  "c1cc(c(cc1F)Cl)OCC2CCN(CC2)C(=O)CC[C@@H]3CCC(=O)N3"  
XP7  SMILES            "OpenEye OEToolkits"  2.0.7  "c1cc(c(cc1F)Cl)OCC2CCN(CC2)C(=O)CCC3CCC(=O)N3"  
#   #
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
XP7  "SYSTEMATIC NAME"  ACDLabs               12.01  "(5S)-5-(3-{4-[(2-chloro-4-fluorophenoxy)methyl]piperidin-1-yl}-3-oxopropyl)pyrrolidin-2-one"  
XP7  "SYSTEMATIC NAME"  "OpenEye OEToolkits"  2.0.7  "(5~{S})-5-[3-[4-[(2-chloranyl-4-fluoranyl-phenoxy)methyl]piperidin-1-yl]-3-oxidanylidene-propyl]pyrrolidin-2-one"  
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
XP7  "Create component"  2020-12-23  RCSB  
XP7  "Initial release"   2021-08-11  RCSB  
##
