data_XF7
#

_chem_comp.id                                   XF7
_chem_comp.name                                 "(5S)-5-(3-{3-chloro-5-[(2-chlorophenyl)methoxy]phenyl}-2-oxo[2H-[1,3'-bipyridine]]-5-yl)pyrimidine-2,4(3H,5H)-dione"
_chem_comp.type                                 non-polymer
_chem_comp.pdbx_type                            HETAIN
_chem_comp.formula                              "C27 H18 Cl2 N4 O4"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        ?
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2020-12-15
_chem_comp.pdbx_modified_date                   2021-02-26
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       533.362
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    XF7
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       7L13
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 RCSB
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
XF7  C1    C1   C   0  1  N  N  N  -20.359  -4.458  -27.856  -1.610  -1.426   0.592  C1    XF7   1  
XF7  C2    C2   C   0  1  N  N  N  -22.671  -4.247  -27.262  -2.187   0.877   0.152  C2    XF7   2  
XF7  C3    C3   C   0  1  N  N  N  -21.693  -4.245  -28.264  -1.240  -0.061   0.524  C3    XF7   3  
XF7  C4    C4   C   0  1  Y  N  N  -22.045  -3.996  -29.724   0.144   0.357   0.848  C4    XF7   4  
XF7  C5    C5   C   0  1  Y  N  N  -22.841  -2.891  -30.041   0.387   1.169   1.956  C5    XF7   5  
XF7  C6    C6   C   0  1  Y  N  N  -18.686  -4.891  -26.089  -3.216  -3.157   0.370  C6    XF7   6  
XF7  C7    C7   C   0  1  Y  N  N  -23.164  -2.633  -31.384   1.678   1.558   2.255  C7    XF7   7  
XF7  C8    C8   C   0  1  Y  N  N  -22.688  -3.475  -32.404   2.732   1.143   1.459  C8    XF7   8  
XF7  C9    C9   C   0  1  Y  N  N  -21.869  -4.566  -32.092   2.497   0.335   0.356  C9    XF7   9  
XF7  C10   C10  C   0  1  N  N  N  -20.155  -6.053  -32.987   4.840   0.375  -0.047  C10   XF7  10  
XF7  C11   C11  C   0  1  Y  N  N  -19.844  -6.715  -34.332   5.855  -0.168  -1.019  C11   XF7  11  
XF7  C12   C12  C   0  1  Y  N  N  -21.549  -4.825  -30.747   1.206  -0.064   0.051  C12   XF7  12  
XF7  C13   C13  C   0  1  Y  N  N  -17.817  -3.795  -26.032  -3.030  -3.992  -0.724  C13   XF7  13  
XF7  C14   C14  C   0  1  Y  N  N  -16.086  -5.274  -25.258  -3.858  -5.802   0.437  C14   XF7  14  
XF7  C15   C15  C   0  1  Y  N  N  -16.967  -6.362  -25.316  -4.072  -5.035   1.568  C15   XF7  15  
XF7  C16   C16  C   0  1  Y  N  N  -18.290  -6.180  -25.725  -3.749  -3.688   1.542  C16   XF7  16  
XF7  C17   C17  C   0  1  N  N  N  -21.043  -4.683  -25.541  -3.806  -0.891  -0.069  C17   XF7  17  
XF7  C18   C18  C   0  1  N  N  N  -22.358  -4.450  -25.913  -3.494   0.446  -0.149  C18   XF7  18  
XF7  C24   C19  C   0  1  N  N  N  -23.476  -4.477  -24.870  -4.530   1.431  -0.551  C24   XF7  19  
XF7  C26   C20  C   0  1  N  N  N  -23.359  -3.983  -23.546  -4.374   2.232  -1.772  C26   XF7  20  
XF7  C25   C21  C   0  1  N  N  N  -24.680  -5.066  -25.297  -5.652   1.610   0.201  C25   XF7  21  
XF7  C30   C22  C   0  1  N  N  N  -25.656  -4.674  -23.141  -6.426   3.251  -1.312  C30   XF7  22  
XF7  C32   C23  C   0  1  Y  N  N  -20.158  -8.053  -34.584   5.446  -0.965  -2.072  C32   XF7  23  
XF7  C33   C24  C   0  1  Y  N  N  -19.867  -8.607  -35.845   6.377  -1.464  -2.964  C33   XF7  24  
XF7  C34   C25  C   0  1  Y  N  N  -19.269  -7.833  -36.854   7.718  -1.167  -2.803  C34   XF7  25  
XF7  C35   C26  C   0  1  Y  N  N  -18.962  -6.489  -36.604   8.128  -0.370  -1.750  C35   XF7  26  
XF7  C36   C27  C   0  1  Y  N  N  -19.259  -5.944  -35.345   7.195   0.134  -0.861  C36   XF7  27  
XF7  N19   N1   N   0  1  N  N  N  -20.047  -4.672  -26.512  -2.868  -1.803   0.297  N19   XF7  28  
XF7  N20   N2   N   0  1  Y  N  N  -16.500  -3.983  -25.605  -3.352  -5.269  -0.658  N20   XF7  29  
XF7  N28   N3   N   0  1  N  N  N  -24.459  -4.091  -22.685  -5.342   3.114  -2.096  N28   XF7  30  
XF7  N29   N4   N   0  1  N  N  N  -25.767  -5.164  -24.445  -6.588   2.523  -0.195  N29   XF7  31  
XF7  O21   O1   O   0  1  N  N  N  -19.329  -4.466  -28.791  -0.784  -2.264   0.913  O21   XF7  32  
XF7  O22   O2   O   0  1  N  N  N  -21.383  -5.380  -33.135   3.534  -0.069  -0.423  O22   XF7  33  
XF7  O27   O3   O   0  1  N  N  N  -22.178  -3.398  -23.067  -3.390   2.103  -2.477  O27   XF7  34  
XF7  O31   O4   O   0  1  N  N  N  -26.763  -4.788  -22.306  -7.285   4.053  -1.625  O31   XF7  35  
XF7  CL23  CL1  CL  0  0  N  N  N  -24.209  -1.245  -31.810   1.980   2.569   3.634  CL23  XF7  36  
XF7  CL24  CL2  CL  0  0  N  N  N  -18.881  -4.241  -34.973   7.709   1.136   0.461  CL24  XF7  37  
XF7  H1    H1   H   0  1  N  N  N  -23.702  -4.086  -27.540  -1.928   1.924   0.094  H1    XF7  38  
XF7  H2    H2   H   0  1  N  N  N  -23.205  -2.241  -29.259  -0.433   1.495   2.578  H2    XF7  39  
XF7  H3    H3   H   0  1  N  N  N  -22.955  -3.279  -33.432   3.739   1.454   1.695  H3    XF7  40  
XF7  H4    H4   H   0  1  N  N  N  -20.235  -6.817  -32.199   5.070   0.018   0.957  H4    XF7  41  
XF7  H5    H5   H   0  1  N  N  N  -19.361  -5.338  -32.725   4.871   1.465  -0.061  H5    XF7  42  
XF7  H6    H6   H   0  1  N  N  N  -20.918  -5.666  -30.498   1.022  -0.693  -0.808  H6    XF7  43  
XF7  H7    H7   H   0  1  N  N  N  -18.162  -2.812  -26.316  -2.618  -3.592  -1.638  H7    XF7  44  
XF7  H8    H8   H   0  1  N  N  N  -15.067  -5.435  -24.939  -4.108  -6.852   0.451  H8    XF7  45  
XF7  H9    H9   H   0  1  N  N  N  -16.621  -7.348  -25.043  -4.487  -5.480   2.460  H9    XF7  46  
XF7  H10   H10  H   0  1  N  N  N  -18.983  -7.008  -25.759  -3.905  -3.065   2.411  H10   XF7  47  
XF7  H11   H11  H   0  1  N  N  N  -20.794  -4.871  -24.507  -4.809  -1.220  -0.301  H11   XF7  48  
XF7  H13   H13  H   0  1  N  N  N  -24.758  -5.447  -26.304  -5.800   1.033   1.102  H13   XF7  49  
XF7  H14   H14  H   0  1  N  N  N  -20.620  -8.657  -33.818   4.399  -1.198  -2.198  H14   XF7  50  
XF7  H15   H15  H   0  1  N  N  N  -20.107  -9.642  -36.040   6.057  -2.087  -3.786  H15   XF7  51  
XF7  H16   H16  H   0  1  N  N  N  -19.047  -8.271  -37.816   8.445  -1.561  -3.497  H16   XF7  52  
XF7  H17   H17  H   0  1  N  N  N  -18.503  -5.881  -37.369   9.175  -0.138  -1.625  H17   XF7  53  
XF7  H18   H18  H   0  1  N  N  N  -24.394  -3.754  -21.746  -5.256   3.652  -2.898  H18   XF7  54  
XF7  H12   H12  H   0  1  N  N  N  -26.621  -5.580  -24.759  -7.386   2.649   0.342  H12   XF7  55  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
XF7  C34   C35   DOUB  Y  N   1  
XF7  C34   C33   SING  Y  N   2  
XF7  C35   C36   SING  Y  N   3  
XF7  C33   C32   DOUB  Y  N   4  
XF7  C36   CL24  SING  N  N   5  
XF7  C36   C11   DOUB  Y  N   6  
XF7  C32   C11   SING  Y  N   7  
XF7  C11   C10   SING  N  N   8  
XF7  O22   C10   SING  N  N   9  
XF7  O22   C9    SING  N  N  10  
XF7  C8    C9    DOUB  Y  N  11  
XF7  C8    C7    SING  Y  N  12  
XF7  C9    C12   SING  Y  N  13  
XF7  CL23  C7    SING  N  N  14  
XF7  C7    C5    DOUB  Y  N  15  
XF7  C12   C4    DOUB  Y  N  16  
XF7  C5    C4    SING  Y  N  17  
XF7  C4    C3    SING  N  N  18  
XF7  O21   C1    DOUB  N  N  19  
XF7  C3    C1    SING  N  N  20  
XF7  C3    C2    DOUB  N  N  21  
XF7  C1    N19   SING  N  N  22  
XF7  C2    C18   SING  N  N  23  
XF7  N19   C6    SING  N  N  24  
XF7  N19   C17   SING  N  N  25  
XF7  C6    C13   DOUB  Y  N  26  
XF7  C6    C16   SING  Y  N  27  
XF7  C13   N20   SING  Y  N  28  
XF7  C18   C17   DOUB  N  N  29  
XF7  C18   C24   SING  N  N  30  
XF7  C16   C15   DOUB  Y  N  31  
XF7  N20   C14   DOUB  Y  N  32  
XF7  C15   C14   SING  Y  N  33  
XF7  C25   C24   DOUB  N  N  34  
XF7  C25   N29   SING  N  N  35  
XF7  C24   C26   SING  N  N  36  
XF7  N29   C30   SING  N  N  37  
XF7  C26   O27   DOUB  N  N  38  
XF7  C26   N28   SING  N  N  39  
XF7  C30   N28   SING  N  N  40  
XF7  C30   O31   DOUB  N  N  41  
XF7  C2    H1    SING  N  N  42  
XF7  C5    H2    SING  N  N  43  
XF7  C8    H3    SING  N  N  44  
XF7  C10   H4    SING  N  N  45  
XF7  C10   H5    SING  N  N  46  
XF7  C12   H6    SING  N  N  47  
XF7  C13   H7    SING  N  N  48  
XF7  C14   H8    SING  N  N  49  
XF7  C15   H9    SING  N  N  50  
XF7  C16   H10   SING  N  N  51  
XF7  C17   H11   SING  N  N  52  
XF7  C25   H13   SING  N  N  53  
XF7  C32   H14   SING  N  N  54  
XF7  C33   H15   SING  N  N  55  
XF7  C34   H16   SING  N  N  56  
XF7  C35   H17   SING  N  N  57  
XF7  N28   H18   SING  N  N  58  
XF7  N29   H12   SING  N  N  59  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
XF7  SMILES            ACDLabs               12.01  "C2(N(c1cnccc1)C=C(C=C2c3cc(cc(c3)OCc4ccccc4Cl)Cl)C=5C(=O)NC(=O)NC=5)=O"  
XF7  InChI             InChI                 1.03   "InChI=1S/C27H18Cl2N4O4/c28-19-8-17(9-21(11-19)37-15-16-4-1-2-6-24(16)29)22-10-18(23-13-31-27(36)32-25(23)34)14-33(26(22)35)20-5-3-7-30-12-20/h1-14H,15H2,(H2,31,32,34,36)"  
XF7  InChIKey          InChI                 1.03   NFXZAFCZOMISJH-UHFFFAOYSA-N  
XF7  SMILES_CANONICAL  CACTVS                3.385  "Clc1cc(OCc2ccccc2Cl)cc(c1)C3=CC(=CN(C3=O)c4cccnc4)C5=CNC(=O)NC5=O"  
XF7  SMILES            CACTVS                3.385  "Clc1cc(OCc2ccccc2Cl)cc(c1)C3=CC(=CN(C3=O)c4cccnc4)C5=CNC(=O)NC5=O"  
XF7  SMILES_CANONICAL  "OpenEye OEToolkits"  2.0.7  "c1ccc(c(c1)COc2cc(cc(c2)Cl)C3=CC(=CN(C3=O)c4cccnc4)C5=CNC(=O)NC5=O)Cl"  
XF7  SMILES            "OpenEye OEToolkits"  2.0.7  "c1ccc(c(c1)COc2cc(cc(c2)Cl)C3=CC(=CN(C3=O)c4cccnc4)C5=CNC(=O)NC5=O)Cl"  
#   #
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
XF7  "SYSTEMATIC NAME"  ACDLabs               12.01  "5-(3-{3-chloro-5-[(2-chlorophenyl)methoxy]phenyl}-2-oxo[2H-[1,3'-bipyridine]]-5-yl)pyrimidine-2,4(1H,3H)-dione"  
XF7  "SYSTEMATIC NAME"  "OpenEye OEToolkits"  2.0.7  "5-[5-[3-chloranyl-5-[(2-chlorophenyl)methoxy]phenyl]-6-oxidanylidene-1-pyridin-3-yl-pyridin-3-yl]-1~{H}-pyrimidine-2,4-dione"  
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
XF7  "Create component"   2020-12-15  RCSB  
XF7  "Modify descriptor"  2020-12-16  RCSB  
XF7  "Initial release"    2021-03-03  RCSB  
##
