data_WA7
#

_chem_comp.id                                   WA7
_chem_comp.name                                 "(1S,2S,3R,4S,5S)-1-(hydroxymethyl)-5-[(4-{[2-nitro-4-(triazan-1-yl)phenyl]amino}butyl)amino]cyclohexane-1,2,3,4-tetrol"
_chem_comp.type                                 non-polymer
_chem_comp.pdbx_type                            HETAIN
_chem_comp.formula                              "C17 H26 N6 O7"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        ?
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2020-10-04
_chem_comp.pdbx_modified_date                   2021-10-01
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       426.424
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    WA7
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       7KB8
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 RCSB
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
WA7  N1   N1   N   0  1  N  N  N  -11.185  22.950  -12.883   3.109   0.335   0.754  N1   WA7   1  
WA7  N3   N2   N   1  1  N  N  N  -19.459  23.812  -10.747  -5.344   2.436   0.266  N3   WA7   2  
WA7  C4   C1   C   0  1  N  N  S   -8.909  23.116  -12.364   4.747   1.633  -0.523  C4   WA7   3  
WA7  C5   C2   C   0  1  N  N  S  -10.246  23.800  -12.265   4.283   1.211   0.873  C5   WA7   4  
WA7  C6   C3   C   0  1  N  N  N  -10.600  24.109  -10.829   5.412   0.458   1.579  C6   WA7   5  
WA7  C7   C4   C   0  1  N  N  N  -10.494  23.539   -8.384   6.912  -1.536   1.474  C7   WA7   6  
WA7  C8   C5   C   0  1  N  N  N  -12.567  23.204  -12.408   1.873   1.121   0.650  C8   WA7   7  
WA7  C10  C6   C   0  1  N  N  N  -14.919  22.229  -12.870  -0.612   0.996   0.420  C10  WA7   8  
WA7  C13  C7   C   0  1  Y  N  N  -17.361  25.462  -13.352  -4.272  -1.198  -0.073  C13  WA7   9  
WA7  C15  C8   C   0  1  Y  N  N  -19.108  26.937  -12.688  -6.707  -1.090  -0.176  C15  WA7  10  
WA7  C17  C9   C   0  1  Y  N  N  -18.907  24.760  -11.684  -5.427   0.967   0.107  C17  WA7  11  
WA7  C1   C10  C   0  1  N  N  S  -10.405  22.988   -9.856   5.783  -0.784   0.767  C1   WA7  12  
WA7  C11  C11  C   0  1  N  N  N  -16.001  23.201  -13.340  -1.809   0.051   0.299  C11  WA7  13  
WA7  C12  C12  C   0  1  Y  N  N  -17.831  24.504  -12.469  -4.245   0.203   0.076  C12  WA7  14  
WA7  C14  C13  C   0  1  Y  N  N  -17.998  26.664  -13.458  -5.444  -1.858  -0.198  C14  WA7  15  
WA7  C16  C14  C   0  1  Y  N  N  -19.553  25.977  -11.815  -6.636   0.377  -0.018  C16  WA7  16  
WA7  C2   C15  C   0  1  N  N  S   -9.105  22.232  -10.069   6.247  -0.361  -0.628  C2   WA7  17  
WA7  C3   C16  C   0  1  N  N  R   -8.923  21.894  -11.511   5.118   0.391  -1.335  C3   WA7  18  
WA7  C9   C17  C   0  1  N  N  N  -13.530  22.656  -13.450   0.676   0.176   0.528  C9   WA7  19  
WA7  N2   N3   N   0  1  N  N  N  -17.092  23.263  -12.415  -3.042   0.835   0.195  N2   WA7  20  
WA7  N4   N4   N   0  1  N  N  N  -19.766  28.209  -12.813  -7.857  -1.694  -0.300  N4   WA7  21  
WA7  N5   N5   N   1  1  N  N  N  -20.619  28.532  -13.862  -7.896  -2.811  -0.420  N5   WA7  22  
WA7  N6   N6   N  -1  1  N  N  N  -19.938  28.974  -15.101  -7.934  -3.928  -0.540  N6   WA7  23  
WA7  O1   O1   O   0  1  N  N  N   -9.622  24.551   -8.228   7.338  -2.631   0.660  O1   WA7  24  
WA7  O2   O2   O   0  1  N  N  N  -11.445  22.116  -10.089   4.642  -1.636   0.652  O2   WA7  25  
WA7  O3   O3   O   0  1  N  N  N   -9.151  21.063   -9.358   6.594  -1.522  -1.387  O3   WA7  26  
WA7  O4   O4   O   0  1  N  N  N   -7.734  21.269  -11.650   5.551   0.786  -2.638  O4   WA7  27  
WA7  O5   O5   O   0  1  N  N  N   -8.678  22.841  -13.717   3.692   2.336  -1.183  O5   WA7  28  
WA7  O6   O6   O   0  1  N  N  N  -18.687  23.016   -9.806  -4.445   2.961   1.072  O6   WA7  29  
WA7  O7   O7   O  -1  1  N  N  N  -20.889  23.670  -10.758  -6.170   3.218  -0.398  O7   WA7  30  
WA7  H1   H1   H   0  1  N  N  N  -10.944  22.001  -12.679   3.062  -0.313   1.526  H1   WA7  31  
WA7  H3   H3   H   0  1  N  N  N   -8.138  23.802  -11.984   5.617   2.284  -0.435  H3   WA7  32  
WA7  H4   H4   H   0  1  N  N  N  -10.189  24.750  -12.817   4.018   2.096   1.451  H4   WA7  33  
WA7  H5   H5   H   0  1  N  N  N   -9.976  24.953  -10.501   6.282   1.109   1.667  H5   WA7  34  
WA7  H6   H6   H   0  1  N  N  N  -11.660  24.403  -10.798   5.081   0.157   2.573  H6   WA7  35  
WA7  H7   H7   H   0  1  N  N  N  -11.514  23.902   -8.190   7.751  -0.860   1.641  H7   WA7  36  
WA7  H8   H8   H   0  1  N  N  N  -10.250  22.733   -7.676   6.554  -1.914   2.431  H8   WA7  37  
WA7  H9   H9   H   0  1  N  N  N  -12.726  24.285  -12.284   1.760   1.739   1.541  H9   WA7  38  
WA7  H10  H10  H   0  1  N  N  N  -12.730  22.697  -11.446   1.922   1.761  -0.231  H10  WA7  39  
WA7  H11  H11  H   0  1  N  N  N  -15.164  21.215  -13.219  -0.562   1.635  -0.461  H11  WA7  40  
WA7  H12  H12  H   0  1  N  N  N  -14.873  22.238  -11.771  -0.725   1.613   1.311  H12  WA7  41  
WA7  H13  H13  H   0  1  N  N  N  -16.490  25.258  -13.957  -3.344  -1.750  -0.092  H13  WA7  42  
WA7  H14  H14  H   0  1  N  N  N  -15.561  24.204  -13.440  -1.695  -0.567  -0.592  H14  WA7  43  
WA7  H15  H15  H   0  1  N  N  N  -16.380  22.868  -14.317  -1.858  -0.589   1.180  H15  WA7  44  
WA7  H16  H16  H   0  1  N  N  N  -17.630  27.407  -14.150  -5.458  -2.932  -0.312  H16  WA7  45  
WA7  H17  H17  H   0  1  N  N  N  -20.429  26.176  -11.215  -7.539   0.969   0.002  H17  WA7  46  
WA7  H18  H18  H   0  1  N  N  N   -8.268  22.863   -9.737   7.118   0.289  -0.540  H18  WA7  47  
WA7  H19  H19  H   0  1  N  N  N   -9.750  21.244  -11.832   4.247  -0.259  -1.423  H19  WA7  48  
WA7  H20  H20  H   0  1  N  N  N  -13.067  21.777  -13.921   0.790  -0.441  -0.363  H20  WA7  49  
WA7  H21  H21  H   0  1  N  N  N  -13.697  23.434  -14.210   0.627  -0.463   1.410  H21  WA7  50  
WA7  H22  H22  H   0  1  N  N  N  -17.721  22.512  -12.618  -3.003   1.804   0.210  H22  WA7  51  
WA7  H27  H27  H   0  1  N  N  N   -9.677  24.883   -7.339   8.054  -3.154   1.046  H27  WA7  52  
WA7  H28  H28  H   0  1  N  N  N  -11.377  21.376   -9.497   4.805  -2.445   0.148  H28  WA7  53  
WA7  H29  H29  H   0  1  N  N  N   -9.267  21.257   -8.435   6.898  -1.329  -2.284  H29  WA7  54  
WA7  H30  H30  H   0  1  N  N  N   -7.723  20.486  -11.113   4.884   1.269  -3.145  H30  WA7  55  
WA7  H31  H31  H   0  1  N  N  N   -7.838  22.407  -13.814   3.916   2.635  -2.075  H31  WA7  56  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
WA7  N6   N5   DOUB  N  N   1  
WA7  N5   N4   DOUB  N  N   2  
WA7  O5   C4   SING  N  N   3  
WA7  C14  C13  DOUB  Y  N   4  
WA7  C14  C15  SING  Y  N   5  
WA7  C9   C10  SING  N  N   6  
WA7  C9   C8   SING  N  N   7  
WA7  C13  C12  SING  Y  N   8  
WA7  C11  C10  SING  N  N   9  
WA7  C11  N2   SING  N  N  10  
WA7  N1   C8   SING  N  N  11  
WA7  N1   C5   SING  N  N  12  
WA7  N4   C15  SING  N  N  13  
WA7  C15  C16  DOUB  Y  N  14  
WA7  C12  N2   SING  N  N  15  
WA7  C12  C17  DOUB  Y  N  16  
WA7  C4   C5   SING  N  N  17  
WA7  C4   C3   SING  N  N  18  
WA7  C5   C6   SING  N  N  19  
WA7  C16  C17  SING  Y  N  20  
WA7  C17  N3   SING  N  N  21  
WA7  O4   C3   SING  N  N  22  
WA7  C3   C2   SING  N  N  23  
WA7  C6   C1   SING  N  N  24  
WA7  O7   N3   SING  N  N  25  
WA7  N3   O6   DOUB  N  N  26  
WA7  O2   C1   SING  N  N  27  
WA7  C2   C1   SING  N  N  28  
WA7  C2   O3   SING  N  N  29  
WA7  C1   C7   SING  N  N  30  
WA7  C7   O1   SING  N  N  31  
WA7  N1   H1   SING  N  N  32  
WA7  C4   H3   SING  N  N  33  
WA7  C5   H4   SING  N  N  34  
WA7  C6   H5   SING  N  N  35  
WA7  C6   H6   SING  N  N  36  
WA7  C7   H7   SING  N  N  37  
WA7  C7   H8   SING  N  N  38  
WA7  C8   H9   SING  N  N  39  
WA7  C8   H10  SING  N  N  40  
WA7  C10  H11  SING  N  N  41  
WA7  C10  H12  SING  N  N  42  
WA7  C13  H13  SING  N  N  43  
WA7  C11  H14  SING  N  N  44  
WA7  C11  H15  SING  N  N  45  
WA7  C14  H16  SING  N  N  46  
WA7  C16  H17  SING  N  N  47  
WA7  C2   H18  SING  N  N  48  
WA7  C3   H19  SING  N  N  49  
WA7  C9   H20  SING  N  N  50  
WA7  C9   H21  SING  N  N  51  
WA7  N2   H22  SING  N  N  52  
WA7  O1   H27  SING  N  N  53  
WA7  O2   H28  SING  N  N  54  
WA7  O3   H29  SING  N  N  55  
WA7  O4   H30  SING  N  N  56  
WA7  O5   H31  SING  N  N  57  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
WA7  SMILES            ACDLabs               12.01  "N(CCCCNc1ccc(cc1[N+](=O)[O-])N=[N+]=[N-])C2C(C(C(C(C2)(CO)O)O)O)O"  
WA7  InChI             InChI                 1.03   "InChI=1S/C17H26N6O7/c18-22-21-10-3-4-11(13(7-10)23(29)30)19-5-1-2-6-20-12-8-17(28,9-24)16(27)15(26)14(12)25/h3-4,7,12,14-16,19-20,24-28H,1-2,5-6,8-9H2/t12-,14-,15+,16-,17-/m0/s1"  
WA7  InChIKey          InChI                 1.03   XGHNPDUMSGEFTQ-RKOFLFEYSA-N  
WA7  SMILES_CANONICAL  CACTVS                3.385  "OC[C@@]1(O)C[C@H](NCCCCNc2ccc(cc2[N+]([O-])=O)N=[N+]=[N-])[C@H](O)[C@@H](O)[C@@H]1O"  
WA7  SMILES            CACTVS                3.385  "OC[C]1(O)C[CH](NCCCCNc2ccc(cc2[N+]([O-])=O)N=[N+]=[N-])[CH](O)[CH](O)[CH]1O"  
WA7  SMILES_CANONICAL  "OpenEye OEToolkits"  2.0.7  "c1cc(c(cc1N=[N+]=[N-])[N+](=O)[O-])NCCCCN[C@H]2C[C@@]([C@H]([C@@H]([C@H]2O)O)O)(CO)O"  
WA7  SMILES            "OpenEye OEToolkits"  2.0.7  "c1cc(c(cc1N=[N+]=[N-])[N+](=O)[O-])NCCCCNC2CC(C(C(C2O)O)O)(CO)O"  
#   #
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
WA7  "SYSTEMATIC NAME"  ACDLabs               12.01  "(1S,2S,3R,4S,5S)-5-({4-[(4-azido-2-nitrophenyl)amino]butyl}amino)-1-(hydroxymethyl)cyclohexane-1,2,3,4-tetrol"  
WA7  "SYSTEMATIC NAME"  "OpenEye OEToolkits"  2.0.7  "(1~{S},2~{S},3~{R},4~{S},5~{S})-5-[4-[(4-azido-2-nitro-phenyl)amino]butylamino]-1-(hydroxymethyl)cyclohexane-1,2,3,4-tetrol"  
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
WA7  "Create component"  2020-10-04  RCSB  
WA7  "Modify charge"     2020-10-27  RCSB  
WA7  "Initial release"   2021-10-06  RCSB  
##
