data_RN7
#

_chem_comp.id                                   RN7
_chem_comp.name                                 "2-[(4-amino-5,6,7,8-tetrahydro[1]benzothieno[2,3-d]pyrimidin-2-yl)sulfanyl]-N-[2-(morpholin-4-yl)ethyl]acetamide"
_chem_comp.type                                 non-polymer
_chem_comp.pdbx_type                            HETAIN
_chem_comp.formula                              "C18 H25 N5 O2 S2"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        ?
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2020-02-17
_chem_comp.pdbx_modified_date                   2020-05-29
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       407.553
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    RN7
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       6VUT
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 RCSB
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
RN7  C26  C1   C  0  1  N  N  N  22.740  -14.060  33.142    7.295   2.364   0.572  C26  RN7   1  
RN7  C25  C2   C  0  1  N  N  N  21.584  -14.802  32.455    8.184   1.440  -0.266  C25  RN7   2  
RN7  C22  C3   C  0  1  Y  N  N  21.167  -12.685  34.453    5.476   0.748   0.063  C22  RN7   3  
RN7  C23  C4   C  0  1  Y  N  N  20.168  -12.902  33.418    6.384  -0.234   0.068  C23  RN7   4  
RN7  C24  C5   C  0  1  N  N  N  20.274  -14.014  32.372    7.885  -0.012   0.113  C24  RN7   5  
RN7  N18  N1   N  0  1  Y  N  N  19.125   -9.839  35.638    2.830  -1.741  -0.058  N18  RN7   6  
RN7  C15  C6   C  0  1  N  N  N  19.452  -13.878  40.372   -8.875  -0.668   0.829  C15  RN7   7  
RN7  C13  C7   C  0  1  N  N  N  18.337  -12.529  38.796   -9.390   1.161  -0.630  C13  RN7   8  
RN7  C12  C8   C  0  1  N  N  N  17.834  -11.710  39.988   -7.948   1.664  -0.528  C12  RN7   9  
RN7  C16  C9   C  0  1  N  N  N  19.052  -12.932  41.508   -7.427  -0.183   0.946  C16  RN7  10  
RN7  C06  C10  C  0  1  N  N  N  20.513   -7.433  38.766   -0.909  -0.311  -0.134  C06  RN7  11  
RN7  C02  C11  C  0  1  Y  N  N  21.481  -10.985  36.415    2.914   1.044  -0.001  C02  RN7  12  
RN7  C04  C12  C  0  1  Y  N  N  19.832   -9.388  36.663    1.745  -0.974  -0.073  C04  RN7  13  
RN7  N01  N2   N  0  1  N  N  N  22.731  -11.555  36.856    2.931   2.427   0.026  N01  RN7  14  
RN7  N03  N3   N  0  1  Y  N  N  20.971   -9.954  37.049    1.778   0.350  -0.046  N03  RN7  15  
RN7  S05  S1   S  0  1  N  N  N  19.236   -7.947  37.567    0.171  -1.763  -0.133  S05  RN7  16  
RN7  C07  C13  C  0  1  N  N  N  20.125   -7.827  40.196   -2.349  -0.755  -0.183  C07  RN7  17  
RN7  N08  N4   N  0  1  N  N  N  19.858   -9.212  40.530   -3.337   0.161  -0.192  N08  RN7  18  
RN7  C09  C14  C  0  1  N  N  N  19.476   -9.597  41.879   -4.736  -0.271  -0.239  C09  RN7  19  
RN7  C10  C15  C  0  1  N  N  N  18.497  -10.790  41.881   -5.649   0.957  -0.240  C10  RN7  20  
RN7  N11  N5   N  0  1  N  N  N  18.784  -11.666  40.997   -7.052   0.524  -0.288  N11  RN7  21  
RN7  O14  O1   O  0  1  N  N  N  19.470  -13.263  39.115   -9.727   0.450   0.565  O14  RN7  22  
RN7  O17  O2   O  0  1  N  N  N  20.039   -6.997  41.036   -2.618  -1.938  -0.214  O17  RN7  23  
RN7  C19  C16  C  0  1  Y  N  N  19.554  -10.891  34.936    4.020  -1.125  -0.013  C19  RN7  24  
RN7  S20  S2   S  0  1  Y  N  N  18.940  -11.722  33.615    5.621  -1.817   0.017  S20  RN7  25  
RN7  C21  C17  C  0  1  Y  N  N  20.752  -11.493  35.308    4.109   0.273   0.016  C21  RN7  26  
RN7  C27  C18  C  0  1  N  N  N  22.400  -13.582  34.550    5.846   2.226   0.101  C27  RN7  27  
RN7  H1   H1   H  0  1  N  N  N  23.603  -14.739  33.203    7.365   2.082   1.623  H1   RN7  28  
RN7  H2   H2   H  0  1  N  N  N  23.005  -13.185  32.531    7.621   3.396   0.449  H2   RN7  29  
RN7  H3   H3   H  0  1  N  N  N  21.391  -15.729  33.016    7.973   1.592  -1.325  H3   RN7  30  
RN7  H4   H4   H  0  1  N  N  N  21.898  -15.052  31.431    9.232   1.663  -0.068  H4   RN7  31  
RN7  H5   H5   H  0  1  N  N  N  20.202  -13.561  31.372    8.375  -0.682  -0.594  H5   RN7  32  
RN7  H6   H6   H  0  1  N  N  N  19.437  -14.712  32.519    8.254  -0.209   1.120  H6   RN7  33  
RN7  H7   H7   H  0  1  N  N  N  18.733  -14.710  40.342   -8.954  -1.386   0.013  H7   RN7  34  
RN7  H8   H8   H  0  1  N  N  N  20.458  -14.270  40.583   -9.176  -1.143   1.763  H8   RN7  35  
RN7  H9   H9   H  0  1  N  N  N  18.578  -11.844  37.970  -10.064   2.009  -0.751  H9   RN7  36  
RN7  H10  H10  H  0  1  N  N  N  17.543  -13.221  38.479   -9.483   0.496  -1.488  H10  RN7  37  
RN7  H11  H11  H  0  1  N  N  N  17.616  -10.685  39.654   -7.668   2.157  -1.459  H11  RN7  38  
RN7  H12  H12  H  0  1  N  N  N  16.915  -12.171  40.379   -7.866   2.371   0.298  H12  RN7  39  
RN7  H13  H13  H  0  1  N  N  N  18.153  -13.322  42.008   -7.338   0.495   1.795  H13  RN7  40  
RN7  H14  H14  H  0  1  N  N  N  19.875  -12.865  42.234   -6.768  -1.038   1.091  H14  RN7  41  
RN7  H15  H15  H  0  1  N  N  N  21.465   -7.919  38.506   -0.739   0.269   0.773  H15  RN7  42  
RN7  H16  H16  H  0  1  N  N  N  20.633   -6.341  38.715   -0.689   0.305  -1.005  H16  RN7  43  
RN7  H17  H17  H  0  1  N  N  N  23.068  -11.047  37.649    2.106   2.919   0.159  H17  RN7  44  
RN7  H18  H18  H  0  1  N  N  N  22.590  -12.512  37.108    3.768   2.904  -0.086  H18  RN7  45  
RN7  H19  H19  H  0  1  N  N  N  19.938   -9.913  39.822   -3.122   1.107  -0.166  H19  RN7  46  
RN7  H20  H20  H  0  1  N  N  N  20.381   -9.878  42.438   -4.906  -0.851  -1.146  H20  RN7  47  
RN7  H21  H21  H  0  1  N  N  N  18.993   -8.740  42.370   -4.956  -0.887   0.633  H21  RN7  48  
RN7  H22  H22  H  0  1  N  N  N  17.482  -10.413  41.686   -5.478   1.537   0.667  H22  RN7  49  
RN7  H23  H23  H  0  1  N  N  N  18.526  -11.267  42.872   -5.429   1.573  -1.112  H23  RN7  50  
RN7  H25  H25  H  0  1  N  N  N  22.185  -14.445  35.197    5.187   2.749   0.793  H25  RN7  51  
RN7  H26  H26  H  0  1  N  N  N  23.245  -13.014  34.966    5.745   2.653  -0.896  H26  RN7  52  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
RN7  C24  C25  SING  N  N   1  
RN7  C24  C23  SING  N  N   2  
RN7  C25  C26  SING  N  N   3  
RN7  C26  C27  SING  N  N   4  
RN7  C23  S20  SING  Y  N   5  
RN7  C23  C22  DOUB  Y  N   6  
RN7  S20  C19  SING  Y  N   7  
RN7  C22  C27  SING  N  N   8  
RN7  C22  C21  SING  Y  N   9  
RN7  C19  C21  DOUB  Y  N  10  
RN7  C19  N18  SING  Y  N  11  
RN7  C21  C02  SING  Y  N  12  
RN7  N18  C04  DOUB  Y  N  13  
RN7  C02  N01  SING  N  N  14  
RN7  C02  N03  DOUB  Y  N  15  
RN7  C04  N03  SING  Y  N  16  
RN7  C04  S05  SING  N  N  17  
RN7  S05  C06  SING  N  N  18  
RN7  C06  C07  SING  N  N  19  
RN7  C13  O14  SING  N  N  20  
RN7  C13  C12  SING  N  N  21  
RN7  O14  C15  SING  N  N  22  
RN7  C12  N11  SING  N  N  23  
RN7  C07  N08  SING  N  N  24  
RN7  C07  O17  DOUB  N  N  25  
RN7  C15  C16  SING  N  N  26  
RN7  N08  C09  SING  N  N  27  
RN7  N11  C16  SING  N  N  28  
RN7  N11  C10  SING  N  N  29  
RN7  C09  C10  SING  N  N  30  
RN7  C26  H1   SING  N  N  31  
RN7  C26  H2   SING  N  N  32  
RN7  C25  H3   SING  N  N  33  
RN7  C25  H4   SING  N  N  34  
RN7  C24  H5   SING  N  N  35  
RN7  C24  H6   SING  N  N  36  
RN7  C15  H7   SING  N  N  37  
RN7  C15  H8   SING  N  N  38  
RN7  C13  H9   SING  N  N  39  
RN7  C13  H10  SING  N  N  40  
RN7  C12  H11  SING  N  N  41  
RN7  C12  H12  SING  N  N  42  
RN7  C16  H13  SING  N  N  43  
RN7  C16  H14  SING  N  N  44  
RN7  C06  H15  SING  N  N  45  
RN7  C06  H16  SING  N  N  46  
RN7  N01  H17  SING  N  N  47  
RN7  N01  H18  SING  N  N  48  
RN7  N08  H19  SING  N  N  49  
RN7  C09  H20  SING  N  N  50  
RN7  C09  H21  SING  N  N  51  
RN7  C10  H22  SING  N  N  52  
RN7  C10  H23  SING  N  N  53  
RN7  C27  H25  SING  N  N  54  
RN7  C27  H26  SING  N  N  55  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
RN7  SMILES            ACDLabs               12.01  "C3Cc2c1c(N)nc(nc1sc2CC3)SCC(NCCN4CCOCC4)=O"  
RN7  InChI             InChI                 1.03   "InChI=1S/C18H25N5O2S2/c19-16-15-12-3-1-2-4-13(12)27-17(15)22-18(21-16)26-11-14(24)20-5-6-23-7-9-25-10-8-23/h1-11H2,(H,20,24)(H2,19,21,22)"  
RN7  InChIKey          InChI                 1.03   CPHMUVOHJJACKB-UHFFFAOYSA-N  
RN7  SMILES_CANONICAL  CACTVS                3.385  "Nc1nc(SCC(=O)NCCN2CCOCC2)nc3sc4CCCCc4c13"  
RN7  SMILES            CACTVS                3.385  "Nc1nc(SCC(=O)NCCN2CCOCC2)nc3sc4CCCCc4c13"  
RN7  SMILES_CANONICAL  "OpenEye OEToolkits"  2.0.7  "C1CCc2c(c3c(nc(nc3s2)SCC(=O)NCCN4CCOCC4)N)C1"  
RN7  SMILES            "OpenEye OEToolkits"  2.0.7  "C1CCc2c(c3c(nc(nc3s2)SCC(=O)NCCN4CCOCC4)N)C1"  
#   #
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
RN7  "SYSTEMATIC NAME"  ACDLabs               12.01  "2-[(4-amino-5,6,7,8-tetrahydro[1]benzothieno[2,3-d]pyrimidin-2-yl)sulfanyl]-N-[2-(morpholin-4-yl)ethyl]acetamide"  
RN7  "SYSTEMATIC NAME"  "OpenEye OEToolkits"  2.0.7  "2-[(4-azanyl-5,6,7,8-tetrahydro-[1]benzothiolo[2,3-d]pyrimidin-2-yl)sulfanyl]-~{N}-(2-morpholin-4-ylethyl)ethanamide"  
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
RN7  "Create component"  2020-02-17  RCSB  
RN7  "Initial release"   2020-06-03  RCSB  
##
