data_RM7
#

_chem_comp.id                                   RM7
_chem_comp.name                                 "2-[(4-amino-6,7,8,9-tetrahydro-5H-cyclohepta[4,5]thieno[2,3-d]pyrimidin-2-yl)sulfanyl]-N-[2-(piperidin-1-yl)ethyl]acetamide"
_chem_comp.type                                 non-polymer
_chem_comp.pdbx_type                            HETAIN
_chem_comp.formula                              "C20 H29 N5 O S2"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        ?
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2020-02-17
_chem_comp.pdbx_modified_date                   2020-05-29
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       419.607
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    RM7
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       6VV3
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 RCSB
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
RM7  C10  C1   C  0  1  N  N  N  18.757  -10.187  42.642   5.980   1.009   0.201  C10  RM7   1  
RM7  C12  C2   C  0  1  N  N  N  17.616  -10.443  40.757   8.270   1.748   0.465  C12  RM7   2  
RM7  C13  C3   C  0  1  N  N  N  17.116  -11.524  39.783   9.712   1.264   0.637  C13  RM7   3  
RM7  C15  C4   C  0  1  N  N  N  18.594  -13.211  40.760   9.184  -0.656  -0.867  C15  RM7   4  
RM7  C16  C5   C  0  1  N  N  N  18.549  -12.310  42.012   7.758  -0.116  -0.996  C16  RM7   5  
RM7  N01  N1   N  0  1  N  N  N  22.529  -11.556  38.230  -2.693   2.297   0.025  N01  RM7   6  
RM7  C02  C6   C  0  1  Y  N  N  21.384  -10.809  37.665  -2.630   0.916   0.054  C02  RM7   7  
RM7  N03  N2   N  0  1  Y  N  N  21.017   -9.636  38.211  -1.460   0.297   0.087  N03  RM7   8  
RM7  C04  C7   C  0  1  Y  N  N  19.979   -8.927  37.729  -1.386  -1.028   0.115  C04  RM7   9  
RM7  S05  S1   S  0  1  N  N  N  19.514   -7.360  38.468   0.199  -1.795   0.157  S05  RM7  10  
RM7  C06  C8   C  0  1  N  N  N  20.780   -6.902  39.696   1.259  -0.327   0.146  C06  RM7  11  
RM7  C07  C9   C  0  1  N  N  N  20.410   -7.468  41.097   2.704  -0.751   0.180  C07  RM7  12  
RM7  N08  N3   N  0  1  N  N  N  20.566   -8.890  41.380   3.679   0.180   0.178  N08  RM7  13  
RM7  C09  C10  C  0  1  N  N  N  20.200   -9.443  42.702   5.085  -0.232   0.211  C09  RM7  14  
RM7  N11  N4   N  0  1  N  N  N  18.660  -10.903  41.645   7.390   0.596   0.234  N11  RM7  15  
RM7  C14  C11  C  0  1  N  N  N  18.107  -12.578  39.555  10.146   0.510  -0.622  C14  RM7  16  
RM7  O17  O1   O  0  1  N  N  N  19.998   -6.727  41.950   2.991  -1.929   0.209  O17  RM7  17  
RM7  N18  N5   N  0  1  Y  N  N  19.263   -9.340  36.679  -2.465  -1.789   0.112  N18  RM7  18  
RM7  C19  C12  C  0  1  Y  N  N  19.545  -10.481  36.078  -3.691  -1.245   0.079  C19  RM7  19  
RM7  C20  C13  C  0  1  Y  N  N  20.628  -11.269  36.543  -3.819   0.140   0.054  C20  RM7  20  
RM7  C21  C14  C  0  1  Y  N  N  20.837  -12.536  35.749  -5.213   0.578   0.019  C21  RM7  21  
RM7  C22  C15  C  0  1  Y  N  N  19.820  -12.570  34.730  -6.091  -0.423   0.023  C22  RM7  22  
RM7  C23  C16  C  0  1  N  N  N  19.572  -13.637  33.613  -7.598  -0.258   0.010  C23  RM7  23  
RM7  C24  C17  C  0  1  N  N  N  20.693  -14.610  33.347  -8.011   0.733  -1.076  C24  RM7  24  
RM7  C25  C18  C  0  1  N  N  N  22.131  -14.037  33.364  -8.042   2.139  -0.484  C25  RM7  25  
RM7  C26  C19  C  0  1  N  N  N  22.818  -13.804  34.740  -6.958   2.271   0.584  C26  RM7  26  
RM7  C27  C20  C  0  1  N  N  N  21.888  -13.655  35.938  -5.589   2.052  -0.020  C27  RM7  27  
RM7  S28  S2   S  0  1  Y  N  N  18.791  -11.192  34.789  -5.282  -1.983   0.075  S28  RM7  28  
RM7  H1   H1   H  0  1  N  N  N  17.963   -9.426  42.614   5.792   1.586  -0.704  H1   RM7  29  
RM7  H2   H2   H  0  1  N  N  N  18.638  -10.809  43.542   5.761   1.622   1.076  H2   RM7  30  
RM7  H3   H3   H  0  1  N  N  N  18.006   -9.599  40.169   7.953   2.273   1.365  H3   RM7  31  
RM7  H4   H4   H  0  1  N  N  N  16.765  -10.104  41.366   8.214   2.424  -0.389  H4   RM7  32  
RM7  H5   H5   H  0  1  N  N  N  16.880  -11.048  38.820  10.367   2.121   0.793  H5   RM7  33  
RM7  H6   H6   H  0  1  N  N  N  16.206  -11.980  40.200   9.771   0.599   1.499  H6   RM7  34  
RM7  H7   H7   H  0  1  N  N  N  17.979  -14.102  40.954   9.235  -1.352  -0.029  H7   RM7  35  
RM7  H8   H8   H  0  1  N  N  N  19.638  -13.516  40.592   9.463  -1.172  -1.785  H8   RM7  36  
RM7  H9   H9   H  0  1  N  N  N  17.596  -12.471  42.537   7.704   0.568  -1.842  H9   RM7  37  
RM7  H10  H10  H  0  1  N  N  N  19.384  -12.576  42.677   7.069  -0.946  -1.155  H10  RM7  38  
RM7  H11  H11  H  0  1  N  N  N  22.908  -11.050  39.004  -3.478   2.740  -0.334  H11  RM7  39  
RM7  H12  H12  H  0  1  N  N  N  22.220  -12.455  38.539  -1.952   2.824   0.365  H12  RM7  40  
RM7  H13  H13  H  0  1  N  N  N  21.752   -7.313  39.385   1.070   0.250  -0.759  H13  RM7  41  
RM7  H14  H14  H  0  1  N  N  N  20.847   -5.806  39.755   1.039   0.286   1.021  H14  RM7  42  
RM7  H15  H15  H  0  1  N  N  N  20.925   -9.498  40.672   3.450   1.122   0.155  H15  RM7  43  
RM7  H16  H16  H  0  1  N  N  N  20.966  -10.168  43.013   5.305  -0.845  -0.663  H16  RM7  44  
RM7  H17  H17  H  0  1  N  N  N  20.152   -8.623  43.434   5.274  -0.809   1.116  H17  RM7  45  
RM7  H19  H19  H  0  1  N  N  N  17.647  -13.351  38.922  10.124   1.185  -1.477  H19  RM7  46  
RM7  H20  H20  H  0  1  N  N  N  18.965  -12.135  39.028  11.157   0.125  -0.486  H20  RM7  47  
RM7  H21  H21  H  0  1  N  N  N  19.369  -13.098  32.676  -8.065  -1.224  -0.185  H21  RM7  48  
RM7  H22  H22  H  0  1  N  N  N  18.685  -14.221  33.900  -7.929   0.113   0.980  H22  RM7  49  
RM7  H23  H23  H  0  1  N  N  N  20.522  -15.052  32.354  -7.291   0.697  -1.894  H23  RM7  50  
RM7  H24  H24  H  0  1  N  N  N  20.639  -15.398  34.113  -9.001   0.472  -1.449  H24  RM7  51  
RM7  H25  H25  H  0  1  N  N  N  22.766  -14.734  32.797  -7.864   2.869  -1.274  H25  RM7  52  
RM7  H26  H26  H  0  1  N  N  N  22.101  -13.066  32.847  -9.018   2.322  -0.035  H26  RM7  53  
RM7  H27  H27  H  0  1  N  N  N  23.481  -14.660  34.934  -7.000   3.268   1.022  H27  RM7  54  
RM7  H28  H28  H  0  1  N  N  N  23.418  -12.885  34.664  -7.122   1.526   1.362  H28  RM7  55  
RM7  H29  H29  H  0  1  N  N  N  21.362  -14.608  36.094  -4.846   2.629   0.530  H29  RM7  56  
RM7  H30  H30  H  0  1  N  N  N  22.494  -13.421  36.826  -5.611   2.391  -1.056  H30  RM7  57  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
RM7  C24  C25  SING  N  N   1  
RM7  C24  C23  SING  N  N   2  
RM7  C25  C26  SING  N  N   3  
RM7  C23  C22  SING  N  N   4  
RM7  C22  S28  SING  Y  N   5  
RM7  C22  C21  DOUB  Y  N   6  
RM7  C26  C27  SING  N  N   7  
RM7  S28  C19  SING  Y  N   8  
RM7  C21  C27  SING  N  N   9  
RM7  C21  C20  SING  Y  N  10  
RM7  C19  C20  DOUB  Y  N  11  
RM7  C19  N18  SING  Y  N  12  
RM7  C20  C02  SING  Y  N  13  
RM7  N18  C04  DOUB  Y  N  14  
RM7  C02  N03  DOUB  Y  N  15  
RM7  C02  N01  SING  N  N  16  
RM7  C04  N03  SING  Y  N  17  
RM7  C04  S05  SING  N  N  18  
RM7  S05  C06  SING  N  N  19  
RM7  C14  C13  SING  N  N  20  
RM7  C14  C15  SING  N  N  21  
RM7  C06  C07  SING  N  N  22  
RM7  C13  C12  SING  N  N  23  
RM7  C12  N11  SING  N  N  24  
RM7  C15  C16  SING  N  N  25  
RM7  C07  N08  SING  N  N  26  
RM7  C07  O17  DOUB  N  N  27  
RM7  N08  C09  SING  N  N  28  
RM7  N11  C16  SING  N  N  29  
RM7  N11  C10  SING  N  N  30  
RM7  C10  C09  SING  N  N  31  
RM7  C10  H1   SING  N  N  32  
RM7  C10  H2   SING  N  N  33  
RM7  C12  H3   SING  N  N  34  
RM7  C12  H4   SING  N  N  35  
RM7  C13  H5   SING  N  N  36  
RM7  C13  H6   SING  N  N  37  
RM7  C15  H7   SING  N  N  38  
RM7  C15  H8   SING  N  N  39  
RM7  C16  H9   SING  N  N  40  
RM7  C16  H10  SING  N  N  41  
RM7  N01  H11  SING  N  N  42  
RM7  N01  H12  SING  N  N  43  
RM7  C06  H13  SING  N  N  44  
RM7  C06  H14  SING  N  N  45  
RM7  N08  H15  SING  N  N  46  
RM7  C09  H16  SING  N  N  47  
RM7  C09  H17  SING  N  N  48  
RM7  C14  H19  SING  N  N  49  
RM7  C14  H20  SING  N  N  50  
RM7  C23  H21  SING  N  N  51  
RM7  C23  H22  SING  N  N  52  
RM7  C24  H23  SING  N  N  53  
RM7  C24  H24  SING  N  N  54  
RM7  C25  H25  SING  N  N  55  
RM7  C25  H26  SING  N  N  56  
RM7  C26  H27  SING  N  N  57  
RM7  C26  H28  SING  N  N  58  
RM7  C27  H29  SING  N  N  59  
RM7  C27  H30  SING  N  N  60  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
RM7  SMILES            ACDLabs               12.01  "C(CNC(CSc1nc(N)c2c(n1)sc3c2CCCCC3)=O)N4CCCCC4"  
RM7  InChI             InChI                 1.03   "InChI=1S/C20H29N5OS2/c21-18-17-14-7-3-1-4-8-15(14)28-19(17)24-20(23-18)27-13-16(26)22-9-12-25-10-5-2-6-11-25/h1-13H2,(H,22,26)(H2,21,23,24)"  
RM7  InChIKey          InChI                 1.03   ZJUBDERDNUODTD-UHFFFAOYSA-N  
RM7  SMILES_CANONICAL  CACTVS                3.385  "Nc1nc(SCC(=O)NCCN2CCCCC2)nc3sc4CCCCCc4c13"  
RM7  SMILES            CACTVS                3.385  "Nc1nc(SCC(=O)NCCN2CCCCC2)nc3sc4CCCCCc4c13"  
RM7  SMILES_CANONICAL  "OpenEye OEToolkits"  2.0.7  "C1CCc2c(sc3c2c(nc(n3)SCC(=O)NCCN4CCCCC4)N)CC1"  
RM7  SMILES            "OpenEye OEToolkits"  2.0.7  "C1CCc2c(sc3c2c(nc(n3)SCC(=O)NCCN4CCCCC4)N)CC1"  
#   #
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
RM7  "SYSTEMATIC NAME"  ACDLabs               12.01  "2-[(4-amino-6,7,8,9-tetrahydro-5H-cyclohepta[4,5]thieno[2,3-d]pyrimidin-2-yl)sulfanyl]-N-[2-(piperidin-1-yl)ethyl]acetamide"  
RM7  "SYSTEMATIC NAME"  "OpenEye OEToolkits"  2.0.7  "2-[(3-azanyl-8-thia-4,6-diazatricyclo[7.5.0.0^{2,7}]tetradeca-1(9),2(7),3,5-tetraen-5-yl)sulfanyl]-~{N}-(2-piperidin-1-ylethyl)ethanamide"  
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
RM7  "Create component"  2020-02-17  RCSB  
RM7  "Initial release"   2020-06-03  RCSB  
##
