data_OD7
# 
_chem_comp.id                                    OD7 
_chem_comp.name                                  "2-(6-methoxy-1H-benzotriazol-1-yl)-N-[4-(piperidin-4-yl)phenyl]-N-[(pyridin-2-yl)methyl]acetamide" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C26 H28 N6 O2" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2023-08-17 
_chem_comp.pdbx_modified_date                    2023-11-03 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        456.540 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     OD7 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        7GFJ 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
OD7 N1  N1  N 0 1 Y N N N N N 8.356  -0.414 18.485 3.441  -1.437 -2.734 N1  OD7 1  
OD7 N3  N2  N 0 1 N N N N N N 10.255 -0.315 22.666 -0.228 1.027  -1.405 N3  OD7 2  
OD7 C4  C1  C 0 1 Y N N N N N 6.512  0.721  18.646 4.499  -2.128 -0.975 C4  OD7 3  
OD7 C5  C2  C 0 1 N N N N N N 8.819  -1.022 20.789 2.175  0.575  -1.776 C5  OD7 4  
OD7 C6  C3  C 0 1 N N N N N N 9.748  0.003  21.438 0.768  0.123  -1.479 C6  OD7 5  
OD7 C7  C4  C 0 1 N N N N N N 11.380 0.471  23.176 0.028  2.430  -1.741 C7  OD7 6  
OD7 C8  C5  C 0 1 Y N N N N N 12.645 -0.339 23.326 0.322  3.203  -0.481 C8  OD7 7  
OD7 C10 C6  C 0 1 Y N N N N N 14.182 -1.549 24.694 1.892  4.130  1.061  C10 OD7 8  
OD7 C13 C7  C 0 1 Y N N N N N 9.805  -1.408 23.478 -1.508 0.626  -1.006 C13 OD7 9  
OD7 C15 C8  C 0 1 Y N N N N N 8.330  -2.283 25.170 -2.983 -1.055 -0.141 C15 OD7 10 
OD7 C17 C9  C 0 1 Y N N N N N 9.964  -3.709 24.173 -3.835 1.116  -0.694 C17 OD7 11 
OD7 C20 C10 C 0 1 N N N N N N 8.862  -4.726 27.309 -5.872 -1.788 -0.631 C20 OD7 12 
OD7 C21 C11 C 0 1 N N N N N N 8.335  -5.953 28.034 -7.245 -2.259 -0.145 C21 OD7 13 
OD7 C22 C12 C 0 1 N N N N N N 6.352  -6.008 26.598 -6.769 -1.505 2.109  C22 OD7 14 
OD7 C24 C13 C 0 1 Y N N N N N 6.815  0.289  19.934 3.753  -1.006 -0.572 C24 OD7 15 
OD7 O1  O1  O 0 1 N N N N N N 10.040 1.041  20.857 0.533  -1.054 -1.308 O1  OD7 16 
OD7 N2  N3  N 0 1 Y N N N N N 7.971  -0.414 19.787 3.084  -0.570 -1.690 N2  OD7 17 
OD7 N   N4  N 0 1 Y N N N N N 7.485  0.263  17.788 4.259  -2.326 -2.292 N   OD7 18 
OD7 C3  C14 C 0 1 Y N N N N N 5.395  1.522  18.428 5.294  -2.798 -0.036 C3  OD7 19 
OD7 C2  C15 C 0 1 Y N N N N N 4.601  1.874  19.507 5.341  -2.361 1.254  C2  OD7 20 
OD7 C25 C16 C 0 1 Y N N N N N 6.025  0.622  21.023 3.811  -0.573 0.748  C25 OD7 21 
OD7 C1  C17 C 0 1 Y N N N N N 4.912  1.420  20.787 4.603  -1.250 1.656  C1  OD7 22 
OD7 O   O2  O 0 1 N N N N N N 4.011  1.815  21.742 4.662  -0.829 2.947  O   OD7 23 
OD7 C   C18 C 0 1 N N N N N N 4.224  1.402  23.093 5.499  -1.573 3.834  C   OD7 24 
OD7 N4  N5  N 0 1 Y N N N N N 13.067 -0.972 22.217 -0.676 3.667  0.247  N4  OD7 25 
OD7 C12 C19 C 0 1 Y N N N N N 14.020 -1.911 22.362 -0.467 4.348  1.356  C12 OD7 26 
OD7 C11 C20 C 0 1 Y N N N N N 14.592 -2.240 23.578 0.817  4.602  1.799  C11 OD7 27 
OD7 C9  C21 C 0 1 Y N N N N N 13.200 -0.578 24.579 1.633  3.412  -0.097 C9  OD7 28 
OD7 C18 C22 C 0 1 Y N N N N N 10.410 -2.662 23.384 -2.573 1.515  -1.088 C18 OD7 29 
OD7 C16 C23 C 0 1 Y N N N N N 8.912  -3.540 25.065 -4.040 -0.167 -0.218 C16 OD7 30 
OD7 C14 C24 C 0 1 Y N N N N N 8.763  -1.226 24.388 -1.718 -0.662 -0.533 C14 OD7 31 
OD7 C19 C25 C 0 1 N N N N N N 8.370  -4.711 25.859 -5.417 -0.597 0.216  C19 OD7 32 
OD7 C23 C26 C 0 1 N N N N N N 6.840  -4.789 25.835 -5.382 -1.011 1.690  C23 OD7 33 
OD7 N5  N6  N 0 1 N N N N N N 6.855  -5.989 27.990 -7.159 -2.645 1.270  N5  OD7 34 
OD7 H1  H1  H 0 1 N N N N N N 8.185  -1.472 21.567 2.217  0.998  -2.780 H1  OD7 35 
OD7 H2  H2  H 0 1 N N N N N N 9.428  -1.805 20.314 2.474  1.332  -1.050 H2  OD7 36 
OD7 H3  H3  H 0 1 N N N N N N 11.574 1.299  22.478 0.884  2.492  -2.412 H3  OD7 37 
OD7 H4  H4  H 0 1 N N N N N N 11.106 0.878  24.160 -0.849 2.853  -2.230 H4  OD7 38 
OD7 H5  H5  H 0 1 N N N N N N 14.624 -1.762 25.656 2.906  4.313  1.382  H5  OD7 39 
OD7 H6  H6  H 0 1 N N N N N N 7.526  -2.128 25.874 -3.146 -2.057 0.228  H6  OD7 40 
OD7 H7  H7  H 0 1 N N N N N N 10.442 -4.674 24.094 -4.662 1.807  -0.753 H7  OD7 41 
OD7 H8  H8  H 0 1 N N N N N N 9.962  -4.744 27.318 -5.153 -2.601 -0.531 H8  OD7 42 
OD7 H9  H9  H 0 1 N N N N N N 8.506  -3.821 27.822 -5.939 -1.488 -1.676 H9  OD7 43 
OD7 H10 H10 H 0 1 N N N N N N 8.733  -6.857 27.551 -7.967 -1.450 -0.257 H10 OD7 44 
OD7 H11 H11 H 0 1 N N N N N N 8.665  -5.923 29.083 -7.565 -3.116 -0.736 H11 OD7 45 
OD7 H12 H12 H 0 1 N N N N N N 5.252  -6.009 26.611 -6.744 -1.814 3.154  H12 OD7 46 
OD7 H13 H13 H 0 1 N N N N N N 6.714  -6.917 26.096 -7.493 -0.699 1.986  H13 OD7 47 
OD7 H14 H14 H 0 1 N N N N N N 5.151  1.864  17.433 5.871  -3.661 -0.335 H14 OD7 48 
OD7 H15 H15 H 0 1 N N N N N N 3.737  2.503  19.355 5.956  -2.882 1.973  H15 OD7 49 
OD7 H16 H16 H 0 1 N N N N N N 6.265  0.275  22.017 3.241  0.289  1.061  H16 OD7 50 
OD7 H17 H17 H 0 1 N N N N N N 3.419  1.799  23.729 6.527  -1.548 3.470  H17 OD7 51 
OD7 H18 H18 H 0 1 N N N N N N 4.224  0.303  23.145 5.456  -1.133 4.830  H18 OD7 52 
OD7 H19 H19 H 0 1 N N N N N N 5.193  1.786  23.445 5.155  -2.606 3.878  H19 OD7 53 
OD7 H20 H20 H 0 1 N N N N N N 14.357 -2.437 21.481 -1.310 4.712  1.926  H20 OD7 54 
OD7 H21 H21 H 0 1 N N N N N N 15.339 -3.017 23.649 0.982  5.160  2.708  H21 OD7 55 
OD7 H22 H22 H 0 1 N N N N N N 12.873 -0.019 25.443 2.445  3.026  -0.695 H22 OD7 56 
OD7 H23 H23 H 0 1 N N N N N N 11.227 -2.816 22.695 -2.414 2.516  -1.459 H23 OD7 57 
OD7 H24 H24 H 0 1 N N N N N N 8.293  -0.258 24.482 -0.893 -1.357 -0.473 H24 OD7 58 
OD7 H25 H25 H 0 1 N N N N N N 8.746  -5.628 25.383 -6.115 0.230  0.086  H25 OD7 59 
OD7 H26 H26 H 0 1 N N N N N N 6.425  -3.882 26.300 -5.100 -0.155 2.303  H26 OD7 60 
OD7 H27 H27 H 0 1 N N N N N N 6.498  -4.856 24.792 -4.655 -1.812 1.826  H27 OD7 61 
OD7 H28 H28 H 0 1 N N N N N N 6.497  -5.179 28.454 -6.524 -3.419 1.395  H28 OD7 62 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
OD7 N   N1  DOUB Y N 1  
OD7 N   C4  SING Y N 2  
OD7 C3  C4  DOUB Y N 3  
OD7 C3  C2  SING Y N 4  
OD7 N1  N2  SING Y N 5  
OD7 C4  C24 SING Y N 6  
OD7 C2  C1  DOUB Y N 7  
OD7 N2  C24 SING Y N 8  
OD7 N2  C5  SING N N 9  
OD7 C24 C25 DOUB Y N 10 
OD7 C1  C25 SING Y N 11 
OD7 C1  O   SING N N 12 
OD7 C5  C6  SING N N 13 
OD7 O1  C6  DOUB N N 14 
OD7 C6  N3  SING N N 15 
OD7 O   C   SING N N 16 
OD7 N4  C12 DOUB Y N 17 
OD7 N4  C8  SING Y N 18 
OD7 C12 C11 SING Y N 19 
OD7 N3  C7  SING N N 20 
OD7 N3  C13 SING N N 21 
OD7 C7  C8  SING N N 22 
OD7 C8  C9  DOUB Y N 23 
OD7 C18 C13 DOUB Y N 24 
OD7 C18 C17 SING Y N 25 
OD7 C13 C14 SING Y N 26 
OD7 C11 C10 DOUB Y N 27 
OD7 C17 C16 DOUB Y N 28 
OD7 C14 C15 DOUB Y N 29 
OD7 C9  C10 SING Y N 30 
OD7 C16 C15 SING Y N 31 
OD7 C16 C19 SING N N 32 
OD7 C23 C19 SING N N 33 
OD7 C23 C22 SING N N 34 
OD7 C19 C20 SING N N 35 
OD7 C22 N5  SING N N 36 
OD7 C20 C21 SING N N 37 
OD7 N5  C21 SING N N 38 
OD7 C5  H1  SING N N 39 
OD7 C5  H2  SING N N 40 
OD7 C7  H3  SING N N 41 
OD7 C7  H4  SING N N 42 
OD7 C10 H5  SING N N 43 
OD7 C15 H6  SING N N 44 
OD7 C17 H7  SING N N 45 
OD7 C20 H8  SING N N 46 
OD7 C20 H9  SING N N 47 
OD7 C21 H10 SING N N 48 
OD7 C21 H11 SING N N 49 
OD7 C22 H12 SING N N 50 
OD7 C22 H13 SING N N 51 
OD7 C3  H14 SING N N 52 
OD7 C2  H15 SING N N 53 
OD7 C25 H16 SING N N 54 
OD7 C   H17 SING N N 55 
OD7 C   H18 SING N N 56 
OD7 C   H19 SING N N 57 
OD7 C12 H20 SING N N 58 
OD7 C11 H21 SING N N 59 
OD7 C9  H22 SING N N 60 
OD7 C18 H23 SING N N 61 
OD7 C14 H24 SING N N 62 
OD7 C19 H25 SING N N 63 
OD7 C23 H26 SING N N 64 
OD7 C23 H27 SING N N 65 
OD7 N5  H28 SING N N 66 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
OD7 SMILES           ACDLabs              12.01 "COc1ccc2nnn(CC(=O)N(Cc3ccccn3)c3ccc(cc3)C3CCNCC3)c2c1"                                                                                                                       
OD7 InChI            InChI                1.06  "InChI=1S/C26H28N6O2/c1-34-23-9-10-24-25(16-23)32(30-29-24)18-26(33)31(17-21-4-2-3-13-28-21)22-7-5-19(6-8-22)20-11-14-27-15-12-20/h2-10,13,16,20,27H,11-12,14-15,17-18H2,1H3" 
OD7 InChIKey         InChI                1.06  NIAFAWJPFVWDCR-UHFFFAOYSA-N                                                                                                                                                   
OD7 SMILES_CANONICAL CACTVS               3.385 "COc1ccc2nnn(CC(=O)N(Cc3ccccn3)c4ccc(cc4)C5CCNCC5)c2c1"                                                                                                                       
OD7 SMILES           CACTVS               3.385 "COc1ccc2nnn(CC(=O)N(Cc3ccccn3)c4ccc(cc4)C5CCNCC5)c2c1"                                                                                                                       
OD7 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "COc1ccc2c(c1)n(nn2)CC(=O)N(Cc3ccccn3)c4ccc(cc4)C5CCNCC5"                                                                                                                     
OD7 SMILES           "OpenEye OEToolkits" 2.0.7 "COc1ccc2c(c1)n(nn2)CC(=O)N(Cc3ccccn3)c4ccc(cc4)C5CCNCC5"                                                                                                                     
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
OD7 "SYSTEMATIC NAME" ACDLabs              12.01 "2-(6-methoxy-1H-benzotriazol-1-yl)-N-[4-(piperidin-4-yl)phenyl]-N-[(pyridin-2-yl)methyl]acetamide" 
OD7 "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "2-(6-methoxybenzotriazol-1-yl)-~{N}-(4-piperidin-4-ylphenyl)-~{N}-(pyridin-2-ylmethyl)ethanamide"  
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
OD7 "Create component" 2023-08-17 RCSB 
OD7 "Initial release"  2023-11-08 RCSB 
# 
