data_MJ7
#

_chem_comp.id                                   MJ7
_chem_comp.name                                 "5'-S-(4-{[(4'-chloro[1,1'-biphenyl]-3-yl)methyl]amino}butyl)-5'-thioadenosine"
_chem_comp.type                                 NON-POLYMER
_chem_comp.pdbx_type                            HETAIN
_chem_comp.formula                              "C27 H31 Cl N6 O3 S"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        ?
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2019-04-04
_chem_comp.pdbx_modified_date                   2019-04-12
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       555.091
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    MJ7
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       6OGN
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 RCSB
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
MJ7  C8   C1   C   0  1  N  N  S  32.956  17.336  67.977    4.960   2.167  -0.473  C8   MJ7   1  
MJ7  C13  C2   C   0  1  N  N  N  30.400  16.304  62.065   -2.762   2.104   1.327  C13  MJ7   2  
MJ7  C12  C3   C   0  1  N  N  N  30.000  16.362  63.539   -1.702   2.094   0.223  C12  MJ7   3  
MJ7  C11  C4   C   0  1  N  N  N  30.253  17.715  64.200   -0.308   2.126   0.854  C11  MJ7   4  
MJ7  C10  C5   C   0  1  N  N  N  31.702  18.171  64.096    0.751   2.116  -0.249  C10  MJ7   5  
MJ7  C9   C6   C   0  1  N  N  N  32.842  17.143  66.473    3.504   2.138  -0.943  C9   MJ7   6  
MJ7  C25  C7   C   0  1  Y  N  N  33.380  11.067  57.256  -10.270  -0.515  -0.684  C25  MJ7   7  
MJ7  C26  C8   C   0  1  Y  N  N  31.370  13.343  59.292   -7.105   0.840   0.821  C26  MJ7   8  
MJ7  C19  C9   C   0  1  Y  N  N  31.976  12.976  58.089   -8.360   0.811   0.217  C19  MJ7   9  
MJ7  C20  C10  C   0  1  Y  N  N  33.230  12.178  58.091   -9.014  -0.487  -0.080  C20  MJ7  10  
MJ7  C21  C11  C   0  1  Y  N  N  34.318  12.552  58.870   -8.375  -1.682   0.244  C21  MJ7  11  
MJ7  C22  C12  C   0  1  Y  N  N  35.527  11.878  58.792   -8.988  -2.887  -0.035  C22  MJ7  12  
MJ7  C23  C13  C   0  1  Y  N  N  35.639  10.790  57.947  -10.235  -2.909  -0.635  C23  MJ7  13  
MJ7  C24  C14  C   0  1  Y  N  N  34.577  10.373  57.183  -10.877  -1.724  -0.954  C24  MJ7  14  
MJ7  C14  C15  C   0  1  N  N  N  29.571  14.488  60.639   -5.145   2.082   1.753  C14  MJ7  15  
MJ7  C15  C16  C   0  1  Y  N  N  30.139  13.999  59.328   -6.501   2.050   1.096  C15  MJ7  16  
MJ7  C16  C17  C   0  1  Y  N  N  29.490  14.257  58.123   -7.137   3.233   0.768  C16  MJ7  17  
MJ7  C17  C18  C   0  1  Y  N  N  30.080  13.913  56.915   -8.381   3.211   0.164  C17  MJ7  18  
MJ7  C18  C19  C   0  1  Y  N  N  31.321  13.295  56.895   -8.999   2.007  -0.106  C18  MJ7  19  
MJ7  C2   C20  C   0  1  Y  N  N  35.277  21.044  69.514    8.166  -1.349   0.328  C2   MJ7  20  
MJ7  C7   C21  C   0  1  N  N  S  31.690  17.820  68.701    5.902   2.262  -1.690  C7   MJ7  21  
MJ7  C6   C22  C   0  1  N  N  R  31.964  19.312  68.940    6.799   1.006  -1.573  C6   MJ7  22  
MJ7  C5   C23  C   0  1  N  N  R  33.484  19.313  69.130    6.657   0.643  -0.073  C5   MJ7  23  
MJ7  C4   C24  C   0  1  Y  N  N  34.190  21.253  67.628    6.007  -1.781   0.198  C4   MJ7  24  
MJ7  C3   C25  C   0  1  Y  N  N  35.923  21.923  68.658    7.937  -2.726   0.490  C3   MJ7  25  
MJ7  CL   CL1  CL  0  0  N  N  N  37.151   9.898  57.882  -11.001  -4.428  -0.984  CL   MJ7  26  
MJ7  N5   N1   N   0  1  N  N  N  30.606  14.929  61.588   -4.100   2.073   0.721  N5   MJ7  27  
MJ7  S    S1   S   0  1  N  N  N  32.424  18.723  65.670    2.403   2.155   0.499  S    MJ7  28  
MJ7  O1   O1   O   0  1  N  N  N  31.501  17.069  69.902    6.692   3.450  -1.619  O1   MJ7  29  
MJ7  O    O2   O   0  1  N  N  N  31.259  19.719  70.113    8.156   1.317  -1.896  O    MJ7  30  
MJ7  O2   O3   O   0  1  N  N  N  33.992  18.300  68.279    5.276   0.947   0.217  O2   MJ7  31  
MJ7  N4   N2   N   0  1  Y  N  N  34.199  20.560  68.812    6.931  -0.780   0.142  N4   MJ7  32  
MJ7  N2   N3   N   0  1  Y  N  N  35.637  20.733  70.756    9.413  -0.892   0.375  N2   MJ7  33  
MJ7  C1   C26  C   0  1  Y  N  N  36.763  21.361  71.109   10.422  -1.715   0.571  C1   MJ7  34  
MJ7  N1   N4   N   0  1  Y  N  N  37.522  22.187  70.386   10.256  -3.015   0.728  N1   MJ7  35  
MJ7  N3   N5   N   0  1  Y  N  N  35.210  22.066  67.476    6.599  -2.922   0.401  N3   MJ7  36  
MJ7  C    C27  C   0  1  Y  N  N  37.139  22.482  69.118    9.046  -3.564   0.697  C    MJ7  37  
MJ7  N    N6   N   0  1  N  N  N  37.967  23.227  68.362    8.882  -4.928   0.863  N    MJ7  38  
MJ7  H1   H1   H   0  1  N  N  N  33.238  16.368  68.417    5.122   3.019   0.187  H1   MJ7  39  
MJ7  H2   H2   H   0  1  N  N  N  31.336  16.867  61.932   -2.631   1.230   1.964  H2   MJ7  40  
MJ7  H3   H3   H   0  1  N  N  N  29.604  16.769  61.465   -2.655   3.009   1.926  H3   MJ7  41  
MJ7  H4   H4   H   0  1  N  N  N  28.926  16.136  63.615   -1.809   1.190  -0.375  H4   MJ7  42  
MJ7  H5   H5   H   0  1  N  N  N  30.575  15.598  64.083   -1.833   2.969  -0.414  H5   MJ7  43  
MJ7  H6   H6   H   0  1  N  N  N  29.614  18.467  63.714   -0.201   3.031   1.453  H6   MJ7  44  
MJ7  H7   H7   H   0  1  N  N  N  29.986  17.640  65.264   -0.178   1.252   1.491  H7   MJ7  45  
MJ7  H8   H8   H   0  1  N  N  N  32.302  17.330  63.717    0.644   1.212  -0.848  H8   MJ7  46  
MJ7  H9   H9   H   0  1  N  N  N  31.750  19.007  63.382    0.621   2.991  -0.886  H9   MJ7  47  
MJ7  H10  H10  H   0  1  N  N  N  32.053  16.406  66.259    3.305   3.012  -1.563  H10  MJ7  48  
MJ7  H11  H11  H   0  1  N  N  N  33.802  16.777  66.079    3.328   1.233  -1.524  H11  MJ7  49  
MJ7  H12  H12  H   0  1  N  N  N  32.544  10.742  56.654  -10.769   0.409  -0.937  H12  MJ7  50  
MJ7  H13  H13  H   0  1  N  N  N  31.869  13.112  60.222   -6.607  -0.084   1.077  H13  MJ7  51  
MJ7  H14  H14  H   0  1  N  N  N  34.220  13.385  59.550   -7.402  -1.666   0.711  H14  MJ7  52  
MJ7  H15  H15  H   0  1  N  N  N  36.371  12.199  59.384   -8.494  -3.814   0.216  H15  MJ7  53  
MJ7  H16  H16  H   0  1  N  N  N  34.673   9.515  56.534  -11.850  -1.747  -1.421  H16  MJ7  54  
MJ7  H17  H17  H   0  1  N  N  N  28.899  15.335  60.435   -5.055   2.987   2.355  H17  MJ7  55  
MJ7  H18  H18  H   0  1  N  N  N  28.999  13.669  61.100   -5.031   1.207   2.393  H18  MJ7  56  
MJ7  H19  H19  H   0  1  N  N  N  28.519  14.729  58.129   -6.661   4.178   0.985  H19  MJ7  57  
MJ7  H20  H20  H   0  1  N  N  N  29.571  14.127  55.987   -8.874   4.138  -0.090  H20  MJ7  58  
MJ7  H21  H21  H   0  1  N  N  N  31.786  13.058  55.949   -9.970   1.991  -0.578  H21  MJ7  59  
MJ7  H22  H22  H   0  1  N  N  N  30.824  17.712  68.031    5.330   2.237  -2.617  H22  MJ7  60  
MJ7  H23  H23  H   0  1  N  N  N  31.682  19.904  68.057    6.425   0.200  -2.205  H23  MJ7  61  
MJ7  H24  H24  H   0  1  N  N  N  33.692  19.047  70.177    7.321   1.257   0.535  H24  MJ7  62  
MJ7  H25  H25  H   0  1  N  N  N  33.413  21.140  66.887    4.941  -1.646   0.090  H25  MJ7  63  
MJ7  H26  H26  H   0  1  N  N  N  30.598  14.314  62.376   -4.202   1.277   0.110  H26  MJ7  64  
MJ7  H28  H28  H   0  1  N  N  N  30.717  17.372  70.346    7.303   3.560  -2.360  H28  MJ7  65  
MJ7  H29  H29  H   0  1  N  N  N  31.419  20.641  70.275    8.281   1.636  -2.801  H29  MJ7  66  
MJ7  H30  H30  H   0  1  N  N  N  37.105  21.175  72.116   11.423  -1.311   0.603  H30  MJ7  67  
MJ7  H31  H31  H   0  1  N  N  N  38.784  23.458  68.890    7.994  -5.316   0.838  H31  MJ7  68  
MJ7  H32  H32  H   0  1  N  N  N  38.232  22.709  67.548    9.656  -5.496   1.005  H32  MJ7  69  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
MJ7  C18  C17  DOUB  Y  N   1  
MJ7  C18  C19  SING  Y  N   2  
MJ7  C17  C16  SING  Y  N   3  
MJ7  C24  C25  DOUB  Y  N   4  
MJ7  C24  C23  SING  Y  N   5  
MJ7  C25  C20  SING  Y  N   6  
MJ7  CL   C23  SING  N  N   7  
MJ7  C23  C22  DOUB  Y  N   8  
MJ7  C19  C20  SING  N  N   9  
MJ7  C19  C26  DOUB  Y  N  10  
MJ7  C20  C21  DOUB  Y  N  11  
MJ7  C16  C15  DOUB  Y  N  12  
MJ7  C22  C21  SING  Y  N  13  
MJ7  C26  C15  SING  Y  N  14  
MJ7  C15  C14  SING  N  N  15  
MJ7  C14  N5   SING  N  N  16  
MJ7  N5   C13  SING  N  N  17  
MJ7  C13  C12  SING  N  N  18  
MJ7  C12  C11  SING  N  N  19  
MJ7  C10  C11  SING  N  N  20  
MJ7  C10  S    SING  N  N  21  
MJ7  S    C9   SING  N  N  22  
MJ7  C9   C8   SING  N  N  23  
MJ7  N3   C4   DOUB  Y  N  24  
MJ7  N3   C3   SING  Y  N  25  
MJ7  C4   N4   SING  Y  N  26  
MJ7  C8   O2   SING  N  N  27  
MJ7  C8   C7   SING  N  N  28  
MJ7  O2   C5   SING  N  N  29  
MJ7  N    C    SING  N  N  30  
MJ7  C3   C    DOUB  Y  N  31  
MJ7  C3   C2   SING  Y  N  32  
MJ7  C7   C6   SING  N  N  33  
MJ7  C7   O1   SING  N  N  34  
MJ7  N4   C5   SING  N  N  35  
MJ7  N4   C2   SING  Y  N  36  
MJ7  C6   C5   SING  N  N  37  
MJ7  C6   O    SING  N  N  38  
MJ7  C    N1   SING  Y  N  39  
MJ7  C2   N2   DOUB  Y  N  40  
MJ7  N1   C1   DOUB  Y  N  41  
MJ7  N2   C1   SING  Y  N  42  
MJ7  C8   H1   SING  N  N  43  
MJ7  C13  H2   SING  N  N  44  
MJ7  C13  H3   SING  N  N  45  
MJ7  C12  H4   SING  N  N  46  
MJ7  C12  H5   SING  N  N  47  
MJ7  C11  H6   SING  N  N  48  
MJ7  C11  H7   SING  N  N  49  
MJ7  C10  H8   SING  N  N  50  
MJ7  C10  H9   SING  N  N  51  
MJ7  C9   H10  SING  N  N  52  
MJ7  C9   H11  SING  N  N  53  
MJ7  C25  H12  SING  N  N  54  
MJ7  C26  H13  SING  N  N  55  
MJ7  C21  H14  SING  N  N  56  
MJ7  C22  H15  SING  N  N  57  
MJ7  C24  H16  SING  N  N  58  
MJ7  C14  H17  SING  N  N  59  
MJ7  C14  H18  SING  N  N  60  
MJ7  C16  H19  SING  N  N  61  
MJ7  C17  H20  SING  N  N  62  
MJ7  C18  H21  SING  N  N  63  
MJ7  C7   H22  SING  N  N  64  
MJ7  C6   H23  SING  N  N  65  
MJ7  C5   H24  SING  N  N  66  
MJ7  C4   H25  SING  N  N  67  
MJ7  N5   H26  SING  N  N  68  
MJ7  O1   H28  SING  N  N  69  
MJ7  O    H29  SING  N  N  70  
MJ7  C1   H30  SING  N  N  71  
MJ7  N    H31  SING  N  N  72  
MJ7  N    H32  SING  N  N  73  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
MJ7  SMILES            ACDLabs               12.01  "C1(OC(C(C1O)O)n3c2ncnc(c2nc3)N)CSCCCCNCc5cc(c4ccc(cc4)Cl)ccc5"  
MJ7  InChI             InChI                 1.03   "InChI=1S/C27H31ClN6O3S/c28-20-8-6-18(7-9-20)19-5-3-4-17(12-19)13-30-10-1-2-11-38-14-21-23(35)24(36)27(37-21)34-16-33-22-25(29)31-15-32-26(22)34/h3-9,12,15-16,21,23-24,27,30,35-36H,1-2,10-11,13-14H2,(H2,29,31,32)/t21-,23-,24-,27-/m1/s1"  
MJ7  InChIKey          InChI                 1.03   UDFJXRJYAZANFF-VBHAUSMQSA-N  
MJ7  SMILES_CANONICAL  CACTVS                3.385  "Nc1ncnc2n(cnc12)[C@@H]3O[C@H](CSCCCCNCc4cccc(c4)c5ccc(Cl)cc5)[C@@H](O)[C@H]3O"  
MJ7  SMILES            CACTVS                3.385  "Nc1ncnc2n(cnc12)[CH]3O[CH](CSCCCCNCc4cccc(c4)c5ccc(Cl)cc5)[CH](O)[CH]3O"  
MJ7  SMILES_CANONICAL  "OpenEye OEToolkits"  2.0.7  "c1cc(cc(c1)c2ccc(cc2)Cl)CNCCCCSC[C@@H]3[C@H]([C@H]([C@@H](O3)n4cnc5c4ncnc5N)O)O"  
MJ7  SMILES            "OpenEye OEToolkits"  2.0.7  "c1cc(cc(c1)c2ccc(cc2)Cl)CNCCCCSCC3C(C(C(O3)n4cnc5c4ncnc5N)O)O"  
#   #
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
MJ7  "SYSTEMATIC NAME"  ACDLabs               12.01  "5'-S-(4-{[(4'-chloro[1,1'-biphenyl]-3-yl)methyl]amino}butyl)-5'-thioadenosine"  
MJ7  "SYSTEMATIC NAME"  "OpenEye OEToolkits"  2.0.7  "(2~{R},3~{R},4~{S},5~{S})-2-(6-aminopurin-9-yl)-5-[4-[[3-(4-chlorophenyl)phenyl]methylamino]butylsulfanylmethyl]oxolane-3,4-diol"  
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
MJ7  "Create component"  2019-04-04  RCSB  
MJ7  "Initial release"   2019-04-17  RCSB  
##
