data_HF7
#

_chem_comp.id                                   HF7
_chem_comp.name                                 "2'-deoxy-2-methyladenosine 5'-(tetrahydrogen triphosphate)"
_chem_comp.type                                 NON-POLYMER
_chem_comp.pdbx_type                            HETAIN
_chem_comp.formula                              "C11 H18 N5 O12 P3"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        Cladribine-TRIPHOSPHATE
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2018-06-27
_chem_comp.pdbx_modified_date                   2021-03-01
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       505.208
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    HF7
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       6DW4
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 RCSB
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
HF7  C2     C1   C  0  1  Y  N  N  56.572   -3.199  108.537   7.333   1.569  -1.204  C2     HF7   1  
HF7  O2A    O1   O  0  1  N  N  N  58.923   -6.129  102.137  -2.803  -2.691   0.403  O2A    HF7   2  
HF7  PA     P1   P  0  1  N  N  N  57.893   -7.160  102.260  -2.157  -1.413   0.778  PA     HF7   3  
HF7  O1A    O2   O  0  1  N  N  N  58.090   -8.159  103.329  -1.838  -1.417   2.356  O1A    HF7   4  
HF7  O3A    O3   O  0  1  N  N  N  57.648   -8.094  101.030  -3.145  -0.190   0.433  O3A    HF7   5  
HF7  PB     P2   P  0  1  N  N  N  58.349   -8.095   99.568  -4.717   0.076   0.659  PB     HF7   6  
HF7  O1B    O4   O  0  1  N  N  N  57.356   -8.640   98.690  -5.471  -1.169   0.394  O1B    HF7   7  
HF7  O2B    O5   O  0  1  N  N  N  58.817   -6.831   99.133  -4.969   0.543   2.179  O2B    HF7   8  
HF7  O3B    O6   O  0  1  N  N  N  59.658   -8.992   99.796  -5.216   1.230  -0.346  O3B    HF7   9  
HF7  PG     P3   P  0  1  N  N  N  59.900  -10.514   99.317  -6.663   1.737  -0.837  PG     HF7  10  
HF7  O3G    O7   O  0  1  N  N  N  61.340  -10.515   99.149  -6.516   3.177  -1.543  O3G    HF7  11  
HF7  O2G    O8   O  0  1  N  N  N  59.619  -11.429  100.463  -7.272   0.682  -1.890  O2G    HF7  12  
HF7  O1G    O9   O  0  1  N  N  N  59.351  -10.916   98.002  -7.568   1.849   0.329  O1G    HF7  13  
HF7  "O5'"  O10  O  0  1  N  N  N  56.467   -6.381  102.424  -0.785  -1.244  -0.047  "O5'"  HF7  14  
HF7  "C5'"  C2   C  0  1  N  N  N  55.288   -7.113  102.767   0.256  -2.224  -0.037  "C5'"  HF7  15  
HF7  "C4'"  C3   C  0  1  N  N  R  54.348   -6.149  103.491   1.411  -1.750  -0.921  "C4'"  HF7  16  
HF7  "C3'"  C4   C  0  1  N  N  S  53.989   -4.972  102.623   2.550  -2.801  -0.939  "C3'"  HF7  17  
HF7  "O3'"  O11  O  0  1  N  N  N  52.587   -4.634  102.890   2.316  -3.789  -1.945  "O3'"  HF7  18  
HF7  "C2'"  C5   C  0  1  N  N  N  54.900   -3.853  103.030   3.784  -1.935  -1.292  "C2'"  HF7  19  
HF7  "C1'"  C6   C  0  1  N  N  R  55.153   -4.098  104.520   3.362  -0.502  -0.911  "C1'"  HF7  20  
HF7  "O4'"  O12  O  0  1  N  N  N  55.024   -5.592  104.660   2.040  -0.581  -0.352  "O4'"  HF7  21  
HF7  N9     N1   N  0  1  Y  N  N  56.461   -3.922  105.076   4.291   0.043   0.082  N9     HF7  22  
HF7  C4     C7   C  0  1  Y  N  N  56.673   -3.649  106.388   5.486   0.664  -0.179  C4     HF7  23  
HF7  C5     C8   C  0  1  Y  N  N  58.102   -3.570  106.544   6.021   1.015   1.071  C5     HF7  24  
HF7  N7     N2   N  0  1  Y  N  N  58.663   -3.794  105.280   5.142   0.598   2.014  N7     HF7  25  
HF7  C8     C9   C  0  1  Y  N  N  57.650   -4.026  104.437   4.126   0.027   1.435  C8     HF7  26  
HF7  N3     N3   N  0  1  Y  N  N  55.900   -3.415  107.420   6.172   0.954  -1.280  N3     HF7  27  
HF7  CL2    C10  C  0  1  N  N  N  55.806   -3.018  109.793   8.072   1.882  -2.480  CL2    HF7  28  
HF7  N1     N4   N  0  1  Y  N  N  57.866   -3.138  108.741   7.872   1.927  -0.053  N1     HF7  29  
HF7  C6     C11  C  0  1  Y  N  N  58.660   -3.372  107.784   7.261   1.676   1.100  C6     HF7  30  
HF7  N6     N5   N  0  1  N  N  N  60.049   -3.276  108.043   7.839   2.046   2.302  N6     HF7  31  
HF7  H1     H1   H  0  1  N  N  N  58.895   -7.969  103.796  -1.413  -0.608   2.673  H1     HF7  32  
HF7  H2     H2   H  0  1  N  N  N  58.373   -6.588   98.329  -4.504   1.355   2.424  H2     HF7  33  
HF7  H3     H3   H  0  1  N  N  N  61.555  -10.768   98.259  -7.351   3.544  -1.864  H3     HF7  34  
HF7  H4     H4   H  0  1  N  N  N  59.105  -12.168  100.160  -6.730   0.558  -2.681  H4     HF7  35  
HF7  H5     H5   H  0  1  N  N  N  54.805   -7.497  101.856   0.613  -2.364   0.984  H5     HF7  36  
HF7  H6     H6   H  0  1  N  N  N  55.546   -7.954  103.427  -0.131  -3.168  -0.419  H6     HF7  37  
HF7  H7     H7   H  0  1  N  N  N  53.435   -6.683  103.793   1.059  -1.543  -1.932  H7     HF7  38  
HF7  H8     H8   H  0  1  N  N  N  54.137   -5.221  101.562   2.667  -3.265   0.040  H8     HF7  39  
HF7  H9     H9   H  0  1  N  N  N  52.030   -5.357  102.624   3.044  -4.416  -2.056  H9     HF7  40  
HF7  H10    H10  H  0  1  N  N  N  55.842   -3.891  102.463   4.649  -2.246  -0.706  H10    HF7  41  
HF7  H11    H11  H  0  1  N  N  N  54.416   -2.878  102.872   4.002  -1.997  -2.358  H11    HF7  42  
HF7  H12    H12  H  0  1  N  N  N  54.386   -3.588  105.122   3.352   0.130  -1.799  H12    HF7  43  
HF7  H13    H13  H  0  1  N  N  N  57.765   -4.264  103.390   3.276  -0.396   1.951  H13    HF7  44  
HF7  H14    H14  H  0  1  N  N  N  54.730   -3.098  109.581   8.732   1.051  -2.730  H14    HF7  45  
HF7  H15    H15  H  0  1  N  N  N  56.096   -3.796  110.515   7.356   2.034  -3.287  H15    HF7  46  
HF7  H16    H16  H  0  1  N  N  N  56.024   -2.026  110.216   8.664   2.788  -2.344  H16    HF7  47  
HF7  H17    H17  H  0  1  N  N  N  60.193   -3.023  109.000   7.387   1.851   3.138  H17    HF7  48  
HF7  H18    H18  H  0  1  N  N  N  60.483   -4.158  107.862   8.695   2.502   2.309  H18    HF7  49  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
HF7  O1G    PG     DOUB  N  N   1  
HF7  O1B    PB     DOUB  N  N   2  
HF7  O2B    PB     SING  N  N   3  
HF7  O3G    PG     SING  N  N   4  
HF7  PG     O3B    SING  N  N   5  
HF7  PG     O2G    SING  N  N   6  
HF7  PB     O3B    SING  N  N   7  
HF7  PB     O3A    SING  N  N   8  
HF7  O3A    PA     SING  N  N   9  
HF7  O2A    PA     DOUB  N  N  10  
HF7  PA     "O5'"  SING  N  N  11  
HF7  PA     O1A    SING  N  N  12  
HF7  "O5'"  "C5'"  SING  N  N  13  
HF7  "C3'"  "O3'"  SING  N  N  14  
HF7  "C3'"  "C2'"  SING  N  N  15  
HF7  "C3'"  "C4'"  SING  N  N  16  
HF7  "C5'"  "C4'"  SING  N  N  17  
HF7  "C2'"  "C1'"  SING  N  N  18  
HF7  "C4'"  "O4'"  SING  N  N  19  
HF7  C8     N9     SING  Y  N  20  
HF7  C8     N7     DOUB  Y  N  21  
HF7  "C1'"  "O4'"  SING  N  N  22  
HF7  "C1'"  N9     SING  N  N  23  
HF7  N9     C4     SING  Y  N  24  
HF7  N7     C5     SING  Y  N  25  
HF7  C4     C5     DOUB  Y  N  26  
HF7  C4     N3     SING  Y  N  27  
HF7  C5     C6     SING  Y  N  28  
HF7  N3     C2     DOUB  Y  N  29  
HF7  C6     N6     SING  N  N  30  
HF7  C6     N1     DOUB  Y  N  31  
HF7  C2     N1     SING  Y  N  32  
HF7  C2     CL2    SING  N  N  33  
HF7  O1A    H1     SING  N  N  34  
HF7  O2B    H2     SING  N  N  35  
HF7  O3G    H3     SING  N  N  36  
HF7  O2G    H4     SING  N  N  37  
HF7  "C5'"  H5     SING  N  N  38  
HF7  "C5'"  H6     SING  N  N  39  
HF7  "C4'"  H7     SING  N  N  40  
HF7  "C3'"  H8     SING  N  N  41  
HF7  "O3'"  H9     SING  N  N  42  
HF7  "C2'"  H10    SING  N  N  43  
HF7  "C2'"  H11    SING  N  N  44  
HF7  "C1'"  H12    SING  N  N  45  
HF7  C8     H13    SING  N  N  46  
HF7  CL2    H14    SING  N  N  47  
HF7  CL2    H15    SING  N  N  48  
HF7  CL2    H16    SING  N  N  49  
HF7  N6     H17    SING  N  N  50  
HF7  N6     H18    SING  N  N  51  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
HF7  SMILES            ACDLabs               12.01  "c3(nc(c2c(n(C1CC(C(COP(=O)(O)OP(OP(O)(O)=O)(=O)O)O1)O)cn2)n3)N)C"  
HF7  InChI             InChI                 1.03   "InChI=1S/C11H18N5O12P3/c1-5-14-10(12)9-11(15-5)16(4-13-9)8-2-6(17)7(26-8)3-25-30(21,22)28-31(23,24)27-29(18,19)20/h4,6-8,17H,2-3H2,1H3,(H,21,22)(H,23,24)(H2,12,14,15)(H2,18,19,20)/t6-,7+,8+/m0/s1"  
HF7  InChIKey          InChI                 1.03   QIXLXEXDORUMBZ-XLPZGREQSA-N  
HF7  SMILES_CANONICAL  CACTVS                3.385  "Cc1nc(N)c2ncn([C@H]3C[C@H](O)[C@@H](CO[P](O)(=O)O[P](O)(=O)O[P](O)(O)=O)O3)c2n1"  
HF7  SMILES            CACTVS                3.385  "Cc1nc(N)c2ncn([CH]3C[CH](O)[CH](CO[P](O)(=O)O[P](O)(=O)O[P](O)(O)=O)O3)c2n1"  
HF7  SMILES_CANONICAL  "OpenEye OEToolkits"  2.0.6  "Cc1nc(c2c(n1)n(cn2)[C@H]3C[C@@H]([C@H](O3)COP(=O)(O)OP(=O)(O)OP(=O)(O)O)O)N"  
HF7  SMILES            "OpenEye OEToolkits"  2.0.6  "Cc1nc(c2c(n1)n(cn2)C3CC(C(O3)COP(=O)(O)OP(=O)(O)OP(=O)(O)O)O)N"  
#   #
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
HF7  "SYSTEMATIC NAME"  ACDLabs               12.01  "2'-deoxy-2-methyladenosine 5'-(tetrahydrogen triphosphate)"  
HF7  "SYSTEMATIC NAME"  "OpenEye OEToolkits"  2.0.6  "[[(2~{R},3~{S},5~{R})-5-(6-azanyl-2-methyl-purin-9-yl)-3-oxidanyl-oxolan-2-yl]methoxy-oxidanyl-phosphoryl] phosphono hydrogen phosphate"  
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
HF7  "Create component"  2018-06-27  RCSB  
HF7  "Modify synonyms"   2018-06-27  RCSB  
HF7  "Initial release"   2018-10-10  RCSB  
HF7  "Modify synonyms"   2021-03-01  PDBE  
#
_pdbx_chem_comp_synonyms.ordinal     1
_pdbx_chem_comp_synonyms.comp_id     HF7
_pdbx_chem_comp_synonyms.name        Cladribine-TRIPHOSPHATE
_pdbx_chem_comp_synonyms.provenance  ?
_pdbx_chem_comp_synonyms.type        ?
##
