data_GY7
#

_chem_comp.id                                   GY7
_chem_comp.name                                 "2-[(2S)-1-(2,6-difluorobenzene-1-carbonyl)pyrrolidin-2-yl]-5-hydroxy-6-oxo-N-(2-phenylethyl)-1,6-dihydropyrimidine-4-carboxamide"
_chem_comp.type                                 NON-POLYMER
_chem_comp.pdbx_type                            HETAIN
_chem_comp.formula                              "C24 H22 F2 N4 O4"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        SRI-29731
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2017-07-11
_chem_comp.pdbx_modified_date                   2021-03-01
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       468.453
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    GY7
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       5WE9
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 RCSB
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
GY7  C1   C1   C  0  1  Y  N  N  -10.301  82.028  13.862   4.540  -1.059  -1.587  C1   GY7   1  
GY7  C10  C2   C  0  1  Y  N  N   -7.801  84.423  18.854  -6.121  -1.502   0.266  C10  GY7   2  
GY7  C11  C3   C  0  1  Y  N  N   -6.709  83.607  19.116  -6.386  -2.311  -0.823  C11  GY7   3  
GY7  C12  C4   C  0  1  Y  N  N   -5.489  83.832  18.499  -7.689  -2.667  -1.119  C12  GY7   4  
GY7  C13  C5   C  0  1  Y  N  N   -5.346  84.873  17.611  -8.726  -2.213  -0.326  C13  GY7   5  
GY7  C14  C6   C  0  1  Y  N  N   -6.417  85.691  17.340  -8.461  -1.403   0.762  C14  GY7   6  
GY7  C15  C7   C  0  1  Y  N  N   -7.639  85.468  17.957  -7.158  -1.053   1.062  C15  GY7   7  
GY7  C16  C8   C  0  1  N  N  N  -10.094  78.830  16.982  -0.432   3.091  -0.767  C16  GY7   8  
GY7  C17  C9   C  0  1  N  N  N   -9.523  77.946  16.066   0.986   3.362  -0.499  C17  GY7   9  
GY7  C18  C10  C  0  1  N  N  N   -5.465  80.095  15.344   2.394   1.421   2.978  C18  GY7  10  
GY7  C19  C11  C  0  1  N  N  N   -5.420  81.390  16.138   3.769   0.732   3.180  C19  GY7  11  
GY7  C2   C12  C  0  1  Y  N  N   -9.117  81.561  13.311   3.868  -1.605  -0.488  C2   GY7  12  
GY7  C20  C13  C  0  1  N  N  N   -5.893  82.396  15.113   4.125   0.319   1.730  C20  GY7  13  
GY7  C21  C14  C  0  1  Y  N  N   -9.211  80.434  12.509   4.319  -2.806   0.071  C21  GY7  14  
GY7  C22  C15  C  0  1  Y  N  N  -10.399  79.781  12.282   5.421  -3.444  -0.467  C22  GY7  15  
GY7  C23  C16  C  0  1  Y  N  N  -11.540  80.276  12.870   6.079  -2.897  -1.554  C23  GY7  16  
GY7  C24  C17  C  0  1  Y  N  N  -11.509  81.402  13.666   5.637  -1.712  -2.116  C24  GY7  17  
GY7  C3   C18  C  0  1  N  N  N   -7.802  82.244  13.549   2.693  -0.918   0.080  C3   GY7  18  
GY7  C4   C19  C  0  1  N  N  S   -6.838  80.197  14.664   1.751   0.587   1.850  C4   GY7  19  
GY7  C5   C20  C  0  1  N  N  N   -7.997  79.684  15.490   0.990   1.491   0.914  C5   GY7  20  
GY7  C6   C21  C  0  1  N  N  N   -9.586  80.091  17.116  -1.011   2.003  -0.133  C6   GY7  21  
GY7  C7   C22  C  0  1  N  N  N  -10.138  81.100  18.088  -2.438   1.681  -0.359  C7   GY7  22  
GY7  C8   C23  C  0  1  N  N  N  -10.139  83.492  18.641  -4.349   0.185  -0.140  C8   GY7  23  
GY7  C9   C24  C  0  1  N  N  N   -9.130  84.178  19.533  -4.701  -1.114   0.588  C9   GY7  24  
GY7  F1   F1   F  0  1  N  N  N  -10.283  83.132  14.642   4.113   0.100  -2.134  F1   GY7  25  
GY7  F2   F2   F  0  1  N  N  N   -8.091  79.934  11.940   3.678  -3.342   1.133  F2   GY7  26  
GY7  N1   N1   N  0  1  N  N  N   -6.919  81.646  14.366   2.842  -0.080   1.125  N1   GY7  27  
GY7  N2   N2   N  0  1  N  N  N   -8.554  80.518  16.368  -0.266   1.242   0.689  N2   GY7  28  
GY7  N3   N3   N  0  1  N  N  N   -9.587  82.313  17.981  -2.969   0.562   0.174  N3   GY7  29  
GY7  N4   N4   N  0  1  N  N  N   -8.465  78.421  15.322   1.639   2.537   0.348  N4   GY7  30  
GY7  O1   O1   O  0  1  N  N  N   -7.581  83.352  13.071   1.590  -1.107  -0.395  O1   GY7  31  
GY7  O2   O2   O  0  1  N  N  N  -11.018  80.802  18.902  -3.131   2.424  -1.026  O2   GY7  32  
GY7  O3   O3   O  0  1  N  N  N  -11.133  78.339  17.675  -1.152   3.880  -1.603  O3   GY7  33  
GY7  O4   O4   O  0  1  N  N  N   -9.918  76.779  15.898   1.556   4.303  -1.025  O4   GY7  34  
GY7  H1   H1   H  0  1  N  N  N   -6.812  82.786  19.810  -5.576  -2.666  -1.442  H1   GY7  35  
GY7  H2   H2   H  0  1  N  N  N   -4.649  83.189  18.716  -7.896  -3.299  -1.970  H2   GY7  36  
GY7  H3   H3   H  0  1  N  N  N   -4.396  85.047  17.128  -9.744  -2.490  -0.558  H3   GY7  37  
GY7  H4   H4   H  0  1  N  N  N   -6.307  86.510  16.645  -9.272  -1.048   1.381  H4   GY7  38  
GY7  H5   H5   H  0  1  N  N  N   -8.474  86.116  17.736  -6.951  -0.420   1.913  H5   GY7  39  
GY7  H6   H6   H  0  1  N  N  N   -5.408  79.217  16.004   1.796   1.364   3.888  H6   GY7  40  
GY7  H7   H7   H  0  1  N  N  N   -4.653  80.050  14.604   2.524   2.458   2.669  H7   GY7  41  
GY7  H8   H8   H  0  1  N  N  N   -4.399  81.616  16.479   4.502   1.433   3.578  H8   GY7  42  
GY7  H9   H9   H  0  1  N  N  N   -6.096  81.352  17.005   3.677  -0.143   3.824  H9   GY7  43  
GY7  H10  H10  H  0  1  N  N  N   -5.070  82.705  14.453   4.553   1.164   1.190  H10  GY7  44  
GY7  H11  H11  H  0  1  N  N  N   -6.326  83.283  15.599   4.821  -0.520   1.735  H11  GY7  45  
GY7  H12  H12  H  0  1  N  N  N  -10.436  78.901  11.657   5.770  -4.371  -0.037  H12  GY7  46  
GY7  H13  H13  H  0  1  N  N  N  -12.481  79.772  12.705   6.939  -3.400  -1.969  H13  GY7  47  
GY7  H14  H14  H  0  1  N  N  N  -12.411  81.782  14.123   6.157  -1.293  -2.964  H14  GY7  48  
GY7  H15  H15  H  0  1  N  N  N   -6.801  79.635  13.719   1.077  -0.156   2.276  H15  GY7  49  
GY7  H16  H16  H  0  1  N  N  N  -10.472  84.204  17.872  -4.451   0.038  -1.215  H16  GY7  50  
GY7  H17  H17  H  0  1  N  N  N  -11.000  83.184  19.253  -5.025   0.977   0.184  H17  GY7  51  
GY7  H18  H18  H  0  1  N  N  N   -9.545  85.147  19.849  -4.600  -0.967   1.663  H18  GY7  52  
GY7  H19  H19  H  0  1  N  N  N   -8.959  83.546  20.417  -4.026  -1.906   0.265  H19  GY7  53  
GY7  H20  H20  H  0  1  N  N  N   -8.762  82.417  17.426  -2.437   0.007   0.765  H20  GY7  54  
GY7  H21  H21  H  0  1  N  N  N   -8.034  77.824  14.646   2.578   2.687   0.543  H21  GY7  55  
GY7  H22  H22  H  0  1  N  N  N  -11.295  77.441  17.411  -0.646   4.609  -1.989  H22  GY7  56  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
GY7  F2   C21  SING  N  N   1  
GY7  C22  C21  DOUB  Y  N   2  
GY7  C22  C23  SING  Y  N   3  
GY7  C21  C2   SING  Y  N   4  
GY7  C23  C24  DOUB  Y  N   5  
GY7  O1   C3   DOUB  N  N   6  
GY7  C2   C3   SING  N  N   7  
GY7  C2   C1   DOUB  Y  N   8  
GY7  C3   N1   SING  N  N   9  
GY7  C24  C1   SING  Y  N  10  
GY7  C1   F1   SING  N  N  11  
GY7  N1   C4   SING  N  N  12  
GY7  N1   C20  SING  N  N  13  
GY7  C4   C18  SING  N  N  14  
GY7  C4   C5   SING  N  N  15  
GY7  C20  C19  SING  N  N  16  
GY7  N4   C5   SING  N  N  17  
GY7  N4   C17  SING  N  N  18  
GY7  C18  C19  SING  N  N  19  
GY7  C5   N2   DOUB  N  N  20  
GY7  O4   C17  DOUB  N  N  21  
GY7  C17  C16  SING  N  N  22  
GY7  N2   C6   SING  N  N  23  
GY7  C16  C6   DOUB  N  N  24  
GY7  C16  O3   SING  N  N  25  
GY7  C6   C7   SING  N  N  26  
GY7  C14  C13  DOUB  Y  N  27  
GY7  C14  C15  SING  Y  N  28  
GY7  C13  C12  SING  Y  N  29  
GY7  C15  C10  DOUB  Y  N  30  
GY7  N3   C7   SING  N  N  31  
GY7  N3   C8   SING  N  N  32  
GY7  C7   O2   DOUB  N  N  33  
GY7  C12  C11  DOUB  Y  N  34  
GY7  C8   C9   SING  N  N  35  
GY7  C10  C11  SING  Y  N  36  
GY7  C10  C9   SING  N  N  37  
GY7  C11  H1   SING  N  N  38  
GY7  C12  H2   SING  N  N  39  
GY7  C13  H3   SING  N  N  40  
GY7  C14  H4   SING  N  N  41  
GY7  C15  H5   SING  N  N  42  
GY7  C18  H6   SING  N  N  43  
GY7  C18  H7   SING  N  N  44  
GY7  C19  H8   SING  N  N  45  
GY7  C19  H9   SING  N  N  46  
GY7  C20  H10  SING  N  N  47  
GY7  C20  H11  SING  N  N  48  
GY7  C22  H12  SING  N  N  49  
GY7  C23  H13  SING  N  N  50  
GY7  C24  H14  SING  N  N  51  
GY7  C4   H15  SING  N  N  52  
GY7  C8   H16  SING  N  N  53  
GY7  C8   H17  SING  N  N  54  
GY7  C9   H18  SING  N  N  55  
GY7  C9   H19  SING  N  N  56  
GY7  N3   H20  SING  N  N  57  
GY7  N4   H21  SING  N  N  58  
GY7  O3   H22  SING  N  N  59  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
GY7  SMILES            ACDLabs               12.01  "c4(F)c(C(N3CCCC3C1=NC(=C(O)C(N1)=O)C(=O)NCCc2ccccc2)=O)c(ccc4)F"  
GY7  InChI             InChI                 1.03   "InChI=1S/C24H22F2N4O4/c25-15-8-4-9-16(26)18(15)24(34)30-13-5-10-17(30)21-28-19(20(31)23(33)29-21)22(32)27-12-11-14-6-2-1-3-7-14/h1-4,6-9,17,31H,5,10-13H2,(H,27,32)(H,28,29,33)/t17-/m0/s1"  
GY7  InChIKey          InChI                 1.03   XCPZFRIVOHADCX-KRWDZBQOSA-N  
GY7  SMILES_CANONICAL  CACTVS                3.385  "OC1=C(N=C(NC1=O)[C@@H]2CCCN2C(=O)c3c(F)cccc3F)C(=O)NCCc4ccccc4"  
GY7  SMILES            CACTVS                3.385  "OC1=C(N=C(NC1=O)[CH]2CCCN2C(=O)c3c(F)cccc3F)C(=O)NCCc4ccccc4"  
GY7  SMILES_CANONICAL  "OpenEye OEToolkits"  2.0.6  "c1ccc(cc1)CCNC(=O)C2=C(C(=O)NC(=N2)[C@@H]3CCCN3C(=O)c4c(cccc4F)F)O"  
GY7  SMILES            "OpenEye OEToolkits"  2.0.6  "c1ccc(cc1)CCNC(=O)C2=C(C(=O)NC(=N2)C3CCCN3C(=O)c4c(cccc4F)F)O"  
#   #
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
GY7  "SYSTEMATIC NAME"  ACDLabs               12.01  "2-[(2S)-1-(2,6-difluorobenzene-1-carbonyl)pyrrolidin-2-yl]-5-hydroxy-6-oxo-N-(2-phenylethyl)-1,6-dihydropyrimidine-4-carboxamide"  
GY7  "SYSTEMATIC NAME"  "OpenEye OEToolkits"  2.0.6  "2-[(2~{S})-1-[2,6-bis(fluoranyl)phenyl]carbonylpyrrolidin-2-yl]-5-oxidanyl-6-oxidanylidene-~{N}-(2-phenylethyl)-1~{H}-pyrimidine-4-carboxamide"  
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
GY7  "Create component"  2017-07-11  RCSB  
GY7  "Initial release"   2017-12-27  RCSB  
GY7  "Modify synonyms"   2021-03-01  PDBE  
#
_pdbx_chem_comp_synonyms.ordinal     1
_pdbx_chem_comp_synonyms.comp_id     GY7
_pdbx_chem_comp_synonyms.name        SRI-29731
_pdbx_chem_comp_synonyms.provenance  ?
_pdbx_chem_comp_synonyms.type        ?
##
