data_DW7
# 
_chem_comp.id                                    DW7 
_chem_comp.name                                  "benzyl [(9S,12S,15S)-12-(cyclohexylmethyl)-9-(hydroxymethyl)-6,11,14-trioxo-1,5,10,13,18,19-hexaazabicyclo[15.2.1]icosa-17(20),18-dien-15-yl]carbamate" 
_chem_comp.type                                  NON-POLYMER 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C30 H43 N7 O6" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2017-11-09 
_chem_comp.pdbx_modified_date                    2024-09-27 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        597.706 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     DW7 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        6BIB 
_chem_comp.pdbx_subcomponent_list                "7NX 5LE GAU ALC" 
_chem_comp.pdbx_processing_site                  RCSB 
_chem_comp.pdbx_pcm                              Y 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
DW7 C34 C23 C 0 1 N N N N N N -2.889  2.938  10.027 -1.547 -1.740 1.437  C8   7NX 1  
DW7 O43 O6  O 0 1 N N N N N N -3.117  3.607  10.987 -1.490 -2.826 1.979  O8   7NX 2  
DW7 O35 O5  O 0 1 N N N N N N -2.570  1.594  10.096 -2.735 -1.125 1.284  O7   7NX 3  
DW7 C36 C24 C 0 1 N N N N N N -2.520  1.059  11.395 -3.906 -1.818 1.791  C7   7NX 4  
DW7 C37 C25 C 0 1 Y N N N N N -3.544  -0.073 11.593 -5.134 -0.984 1.532  C1   7NX 5  
DW7 C38 C26 C 0 1 Y N N N N N -3.782  -1.002 10.586 -5.553 -0.060 2.471  C2   7NX 6  
DW7 C39 C27 C 0 1 Y N N N N N -4.695  -2.027 10.799 -6.679 0.705  2.234  C3   7NX 7  
DW7 C40 C28 C 0 1 Y N N N N N -5.372  -2.137 12.011 -7.387 0.547  1.057  C4   7NX 8  
DW7 C41 C29 C 0 1 Y N N N N N -5.137  -1.215 13.014 -6.968 -0.376 0.117  C5   7NX 9  
DW7 C42 C30 C 0 1 Y N N N N N -4.221  -0.191 12.810 -5.839 -1.138 0.353  C6   7NX 10 
DW7 N18 N3  N 0 1 N N N N N N -1.659  3.939  2.021  -2.170 2.411  -2.435 N16  5LE 11 
DW7 C19 C4  C 0 1 N N N N N N -1.000  5.000  2.726  -2.394 1.138  -3.162 C17  5LE 12 
DW7 C20 C6  C 0 1 N N N N N N 0.001   4.388  3.691  -2.699 0.042  -2.139 C18  5LE 13 
DW7 C21 C5  C 0 1 N N N N N N 0.473   5.540  4.539  -2.658 -1.324 -2.827 C19  5LE 14 
DW7 N30 N4  N 0 1 Y N N N N N -0.202  5.431  5.790  -1.713 -2.196 -2.125 N20  5LE 15 
DW7 C29 C11 C 0 1 Y N N N N N -1.324  6.045  6.236  -0.817 -1.803 -1.190 C21  5LE 16 
DW7 C28 C10 C 0 1 Y N N N N N -1.631  5.613  7.564  -0.151 -2.920 -0.813 C22  5LE 17 
DW7 C27 C12 C 0 1 N N N N N N -2.724  5.972  8.526  0.956  -3.010 0.205  C23  5LE 18 
DW7 C26 C14 C 0 1 N N S N N N -3.659  4.804  8.653  0.873  -1.818 1.160  C24  5LE 19 
DW7 N33 N7  N 0 1 N N N N N N -2.963  3.532  8.720  -0.420 -1.149 0.993  N25  5LE 20 
DW7 C02 C15 C 0 1 N N N N N N -4.586  4.849  7.441  1.984  -0.848 0.852  C36  5LE 21 
DW7 O01 O2  O 0 1 N N N N N N -4.410  4.162  6.482  2.555  -0.880 -0.217 O37  5LE 22 
DW7 N32 N6  N 0 1 Y N N N N N -0.647  4.761  7.797  -0.668 -3.928 -1.525 N38  5LE 23 
DW7 N31 N5  N 0 1 Y N N N N N 0.176   4.653  6.760  -1.591 -3.466 -2.292 N39  5LE 24 
DW7 N13 N2  N 0 1 N N N N N N -6.609  5.845  3.978  2.382  2.843  -0.015 N    GAU 25 
DW7 C14 C2  C 0 1 N N S N N N -6.157  6.176  2.644  1.607  4.100  -0.078 CA   GAU 26 
DW7 C15 C22 C 0 1 N N N N N N -5.409  5.002  2.037  0.956  4.209  -1.458 CB   GAU 27 
DW7 C16 C8  C 0 1 N N N N N N -3.959  4.982  2.526  -0.541 3.922  -1.346 CG   GAU 28 
DW7 C17 C9  C 0 1 N N N N N N -3.092  3.893  1.901  -0.868 2.654  -2.092 CD   GAU 29 
DW7 O22 O1  O 0 1 N N N N N N -3.559  2.979  1.332  0.006  1.865  -2.382 OE1  GAU 30 
DW7 C23 C13 C 0 1 N N N N N N -7.427  6.461  1.883  0.525  4.090  1.004  C    GAU 31 
DW7 O24 O3  O 0 1 N N N N N N -8.108  7.487  2.606  -0.306 5.244  0.857  OXT  GAU 32 
DW7 N03 N1  N 0 1 N N N N N N -5.663  5.763  7.547  2.335  0.071  1.804  N    ALC 33 
DW7 C04 C16 C 0 1 N N S N N N -6.625  5.892  6.482  3.365  1.049  1.375  CA   ALC 34 
DW7 C12 C3  C 0 1 N N N N N N -5.982  6.344  5.178  2.706  2.397  1.231  C    ALC 35 
DW7 O25 O4  O 0 1 N N N N N N -5.032  7.056  5.156  2.468  3.074  2.209  O    ALC 36 
DW7 C05 C17 C 0 1 N N N N N N -7.618  6.921  6.969  3.957  0.618  0.031  CB   ALC 37 
DW7 C06 C18 C 0 1 N N N N N N -8.414  6.467  8.192  4.690  -0.714 0.200  CG   ALC 38 
DW7 C11 C1  C 0 1 N N N N N N -9.405  7.579  8.533  5.123  -1.235 -1.171 CD2  ALC 39 
DW7 C10 C7  C 0 1 N N N N N N -10.471 7.150  9.523  5.856  -2.568 -1.002 CE2  ALC 40 
DW7 C09 C21 C 0 1 N N N N N N -11.105 5.819  9.173  7.090  -2.362 -0.121 CZ   ALC 41 
DW7 C08 C20 C 0 1 N N N N N N -10.057 4.747  9.014  6.657  -1.841 1.250  CE1  ALC 42 
DW7 C07 C19 C 0 1 N N N N N N -9.094  5.124  7.914  5.924  -0.509 1.081  CD1  ALC 43 
DW7 H37 H37 H 0 1 N N N N N N -1.511  0.661  11.576 -4.006 -2.779 1.286  H1   7NX 44 
DW7 H38 H38 H 0 1 N N N N N N -2.733  1.861  12.118 -3.796 -1.980 2.863  H3   7NX 45 
DW7 H39 H39 H 0 1 N N N N N N -3.260  -0.927 9.644  -5.000 0.064  3.391  H5   7NX 46 
DW7 H40 H40 H 0 1 N N N N N N -4.882  -2.747 10.016 -7.007 1.426  2.968  H7   7NX 47 
DW7 H41 H41 H 0 1 N N N N N N -6.078  -2.939 12.167 -8.268 1.144  0.872  H10  7NX 48 
DW7 H42 H42 H 0 1 N N N N N N -5.664  -1.291 13.954 -7.521 -0.501 -0.802 H11  7NX 49 
DW7 H43 H43 H 0 1 N N N N N N -4.030  0.521  13.599 -5.509 -1.857 -0.383 H13  7NX 50 
DW7 H34 H34 H 0 1 N N N N N N -1.110  3.215  1.603  -2.890 3.026  -2.222 H21  5LE 51 
DW7 H4  H4  H 0 1 N N N N N N -0.476  5.651  2.011  -3.239 1.249  -3.842 H22  5LE 52 
DW7 H5  H5  H 0 1 N N N N N N -1.741  5.591  3.285  -1.499 0.875  -3.724 H23  5LE 53 
DW7 H8  H8  H 0 1 N N N N N N -0.481  3.620  4.314  -1.955 0.070  -1.343 H24  5LE 54 
DW7 H9  H9  H 0 1 N N N N N N 0.843   3.940  3.143  -3.690 0.206  -1.715 H25  5LE 55 
DW7 H6  H6  H 0 1 N N N N N N 1.561   5.480  4.689  -3.651 -1.773 -2.804 H26  5LE 56 
DW7 H7  H7  H 0 1 N N N N N N 0.222   6.495  4.055  -2.339 -1.200 -3.862 H27  5LE 57 
DW7 H14 H14 H 0 1 N N N N N N -1.904  6.759  5.670  -0.663 -0.800 -0.820 H28  5LE 58 
DW7 H15 H15 H 0 1 N N N N N N -2.289  6.206  9.509  0.854  -3.936 0.771  H29  5LE 59 
DW7 H16 H16 H 0 1 N N N N N N -3.274  6.847  8.150  1.920  -3.000 -0.304 H30  5LE 60 
DW7 H19 H19 H 0 1 N N N N N N -4.267  4.936  9.560  0.970  -2.168 2.188  H31  5LE 61 
DW7 H36 H36 H 0 1 N N N N N N -2.563  3.099  7.913  -0.465 -0.280 0.564  H32  5LE 62 
DW7 H31 H31 H 0 1 N N N N N N -7.398  5.238  4.073  2.645  2.363  -0.815 H    GAU 63 
DW7 H3  H3  H 0 1 N N N N N N -5.513  7.068  2.655  2.274  4.949  0.080  HA   GAU 64 
DW7 H32 H32 H 0 1 N N N N N N -5.420  5.093  0.941  1.105  5.214  -1.851 HB2  GAU 65 
DW7 H33 H33 H 0 1 N N N N N N -5.904  4.065  2.333  1.416  3.484  -2.131 HB3  GAU 66 
DW7 H12 H12 H 0 1 N N N N N N -3.967  4.831  3.616  -0.811 3.805  -0.297 HG2  GAU 67 
DW7 H13 H13 H 0 1 N N N N N N -3.505  5.957  2.294  -1.102 4.752  -1.776 HG3  GAU 68 
DW7 H17 H17 H 0 1 N N N N N N -8.050  5.556  1.829  -0.081 3.190  0.903  HO1  GAU 69 
DW7 H18 H18 H 0 1 N N N N N N -7.192  6.805  0.865  0.995  4.104  1.988  HO2  GAU 70 
DW7 H35 H35 H 0 1 N N N N N N -8.920  7.702  2.162  -1.015 5.303  1.511  HXT  GAU 71 
DW7 H20 H20 H 0 1 N N N N N N -5.757  6.324  8.369  1.941  0.082  2.691  H    ALC 72 
DW7 H21 H21 H 0 1 N N N N N N -7.143  4.936  6.317  4.155  1.103  2.124  HA   ALC 73 
DW7 H22 H22 H 0 1 N N N N N N -7.070  7.838  7.231  3.155  0.502  -0.698 HB2  ALC 74 
DW7 H23 H23 H 0 1 N N N N N N -8.324  7.137  6.154  4.657  1.377  -0.317 HB3  ALC 75 
DW7 H24 H24 H 0 1 N N N N N N -7.721  6.342  9.037  4.024  -1.438 0.671  HG   ALC 76 
DW7 H2  H2  H 0 1 N N N N N N -9.900  7.902  7.605  4.244  -1.382 -1.798 HD23 ALC 77 
DW7 H1  H1  H 0 1 N N N N N N -8.847  8.423  8.964  5.789  -0.512 -1.641 HD22 ALC 78 
DW7 H11 H11 H 0 1 N N N N N N -11.258 7.918  9.545  5.191  -3.292 -0.532 HE23 ALC 79 
DW7 H10 H10 H 0 1 N N N N N N -10.011 7.068  10.519 6.165  -2.939 -1.979 HE22 ALC 80 
DW7 H30 H30 H 0 1 N N N N N N -11.798 5.528  9.976  7.613  -3.311 -0.001 HZ3  ALC 81 
DW7 H29 H29 H 0 1 N N N N N N -11.660 5.922  8.229  7.756  -1.638 -0.591 HZ2  ALC 82 
DW7 H28 H28 H 0 1 N N N N N N -9.505  4.635  9.959  5.991  -2.565 1.721  HE13 ALC 83 
DW7 H27 H27 H 0 1 N N N N N N -10.546 3.795  8.760  7.536  -1.695 1.878  HE12 ALC 84 
DW7 H25 H25 H 0 1 N N N N N N -9.646  5.194  6.965  6.589  0.215  0.611  HD12 ALC 85 
DW7 H26 H26 H 0 1 N N N N N N -8.323  4.344  7.833  5.615  -0.137 2.058  HD13 ALC 86 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
DW7 O22 C17 DOUB N N 1  
DW7 C23 O24 SING N N 2  
DW7 C23 C14 SING N N 3  
DW7 C17 N18 SING N N 4  
DW7 C17 C16 SING N N 5  
DW7 N18 C19 SING N N 6  
DW7 C15 C16 SING N N 7  
DW7 C15 C14 SING N N 8  
DW7 C14 N13 SING N N 9  
DW7 C19 C20 SING N N 10 
DW7 C20 C21 SING N N 11 
DW7 N13 C12 SING N N 12 
DW7 C21 N30 SING N N 13 
DW7 O25 C12 DOUB N N 14 
DW7 C12 C04 SING N N 15 
DW7 N30 C29 SING Y N 16 
DW7 N30 N31 SING Y N 17 
DW7 C29 C28 DOUB Y N 18 
DW7 C04 C05 SING N N 19 
DW7 C04 N03 SING N N 20 
DW7 O01 C02 DOUB N N 21 
DW7 N31 N32 DOUB Y N 22 
DW7 C05 C06 SING N N 23 
DW7 C02 N03 SING N N 24 
DW7 C02 C26 SING N N 25 
DW7 C28 N32 SING Y N 26 
DW7 C28 C27 SING N N 27 
DW7 C07 C06 SING N N 28 
DW7 C07 C08 SING N N 29 
DW7 C06 C11 SING N N 30 
DW7 C27 C26 SING N N 31 
DW7 C11 C10 SING N N 32 
DW7 C26 N33 SING N N 33 
DW7 N33 C34 SING N N 34 
DW7 C08 C09 SING N N 35 
DW7 C09 C10 SING N N 36 
DW7 C34 O35 SING N N 37 
DW7 C34 O43 DOUB N N 38 
DW7 O35 C36 SING N N 39 
DW7 C38 C39 DOUB Y N 40 
DW7 C38 C37 SING Y N 41 
DW7 C39 C40 SING Y N 42 
DW7 C36 C37 SING N N 43 
DW7 C37 C42 DOUB Y N 44 
DW7 C40 C41 DOUB Y N 45 
DW7 C42 C41 SING Y N 46 
DW7 C11 H1  SING N N 47 
DW7 C11 H2  SING N N 48 
DW7 C14 H3  SING N N 49 
DW7 C19 H4  SING N N 50 
DW7 C19 H5  SING N N 51 
DW7 C21 H6  SING N N 52 
DW7 C21 H7  SING N N 53 
DW7 C20 H8  SING N N 54 
DW7 C20 H9  SING N N 55 
DW7 C10 H10 SING N N 56 
DW7 C10 H11 SING N N 57 
DW7 C16 H12 SING N N 58 
DW7 C16 H13 SING N N 59 
DW7 C29 H14 SING N N 60 
DW7 C27 H15 SING N N 61 
DW7 C27 H16 SING N N 62 
DW7 C23 H17 SING N N 63 
DW7 C23 H18 SING N N 64 
DW7 C26 H19 SING N N 65 
DW7 N03 H20 SING N N 66 
DW7 C04 H21 SING N N 67 
DW7 C05 H22 SING N N 68 
DW7 C05 H23 SING N N 69 
DW7 C06 H24 SING N N 70 
DW7 C07 H25 SING N N 71 
DW7 C07 H26 SING N N 72 
DW7 C08 H27 SING N N 73 
DW7 C08 H28 SING N N 74 
DW7 C09 H29 SING N N 75 
DW7 C09 H30 SING N N 76 
DW7 N13 H31 SING N N 77 
DW7 C15 H32 SING N N 78 
DW7 C15 H33 SING N N 79 
DW7 N18 H34 SING N N 80 
DW7 O24 H35 SING N N 81 
DW7 N33 H36 SING N N 82 
DW7 C36 H37 SING N N 83 
DW7 C36 H38 SING N N 84 
DW7 C38 H39 SING N N 85 
DW7 C39 H40 SING N N 86 
DW7 C40 H41 SING N N 87 
DW7 C41 H42 SING N N 88 
DW7 C42 H43 SING N N 89 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
DW7 SMILES           ACDLabs              12.01 "C(OCc1ccccc1)(=O)NC2Cc4cn(CCCNC(CCC(NC(C(NC2=O)CC3CCCCC3)=O)CO)=O)nn4"                                                                                                                                                                                                    
DW7 InChI            InChI                1.03  "InChI=1S/C30H43N7O6/c38-19-23-12-13-27(39)31-14-7-15-37-18-24(35-36-37)17-26(34-30(42)43-20-22-10-5-2-6-11-22)29(41)33-25(28(40)32-23)16-21-8-3-1-4-9-21/h2,5-6,10-11,18,21,23,25-26,38H,1,3-4,7-9,12-17,19-20H2,(H,31,39)(H,32,40)(H,33,41)(H,34,42)/t23-,25-,26-/m0/s1" 
DW7 InChIKey         InChI                1.03  DATPOADEZAYIPB-RNXOBYDBSA-N                                                                                                                                                                                                                                                
DW7 SMILES_CANONICAL CACTVS               3.385 "OC[C@@H]1CCC(=O)NCCCn2cc(C[C@H](NC(=O)OCc3ccccc3)C(=O)N[C@@H](CC4CCCCC4)C(=O)N1)nn2"                                                                                                                                                                                      
DW7 SMILES           CACTVS               3.385 "OC[CH]1CCC(=O)NCCCn2cc(C[CH](NC(=O)OCc3ccccc3)C(=O)N[CH](CC4CCCCC4)C(=O)N1)nn2"                                                                                                                                                                                           
DW7 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.6 "c1ccc(cc1)COC(=O)N[C@H]2Cc3cn(nn3)CCCNC(=O)CC[C@H](NC(=O)[C@@H](NC2=O)CC4CCCCC4)CO"                                                                                                                                                                                       
DW7 SMILES           "OpenEye OEToolkits" 2.0.6 "c1ccc(cc1)COC(=O)NC2Cc3cn(nn3)CCCNC(=O)CCC(NC(=O)C(NC2=O)CC4CCCCC4)CO"                                                                                                                                                                                                    
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
DW7 "SYSTEMATIC NAME" ACDLabs              12.01 "benzyl [(9S,12S,15S)-12-(cyclohexylmethyl)-9-(hydroxymethyl)-6,11,14-trioxo-1,5,10,13,18,19-hexaazabicyclo[15.2.1]icosa-17(20),18-dien-15-yl]carbamate"                                   
DW7 "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.6 "(phenylmethyl) ~{N}-[(9~{S},12~{S},15~{S})-12-(cyclohexylmethyl)-9-(hydroxymethyl)-6,11,14-tris(oxidanylidene)-1,5,10,13,18,19-hexazabicyclo[15.2.1]icosa-17(20),18-dien-15-yl]carbamate" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
DW7 "Create component" 2017-11-09 RCSB 
DW7 "Initial release"  2018-11-07 RCSB 
DW7 "Modify PCM"       2024-09-27 PDBE 
# 
_pdbx_chem_comp_pcm.pcm_id                             1 
_pdbx_chem_comp_pcm.comp_id                            DW7 
_pdbx_chem_comp_pcm.modified_residue_id                CYS 
_pdbx_chem_comp_pcm.type                               None 
_pdbx_chem_comp_pcm.category                           "Covalent chemical modification" 
_pdbx_chem_comp_pcm.position                           "Amino-acid side chain" 
_pdbx_chem_comp_pcm.polypeptide_position               "Any position" 
_pdbx_chem_comp_pcm.comp_id_linking_atom               C23 
_pdbx_chem_comp_pcm.modified_residue_id_linking_atom   SG 
_pdbx_chem_comp_pcm.uniprot_specific_ptm_accession     ? 
_pdbx_chem_comp_pcm.uniprot_generic_ptm_accession      ? 
# 
