data_D47
# 
_chem_comp.id                                    D47 
_chem_comp.name                                  "(3S,6S)-3-[(2-chlorophenyl)sulfanyl]-6-{6-[(4-fluorophenyl)amino]pyridin-2-yl}-6-(thiophen-3-yl)piperidine-2,4-dione" 
_chem_comp.type                                  NON-POLYMER 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C26 H19 Cl F N3 O2 S2" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2017-10-17 
_chem_comp.pdbx_modified_date                    2018-10-19 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        524.029 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     D47 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        6BAZ 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
D47 C4   C1  C  0 1 Y N N -7.635  -16.280 17.919 4.902  -0.746 -0.275 C4   D47 1  
D47 C14  C2  C  0 1 N N N -9.229  -13.066 21.163 0.155  -2.181 1.786  C14  D47 2  
D47 C5   C3  C  0 1 Y N N -8.504  -15.271 18.379 3.734  -0.586 0.463  C5   D47 3  
D47 C6   C4  C  0 1 Y N N -9.877  -15.539 18.446 3.514  0.595  1.162  C6   D47 4  
D47 C11  C5  C  0 1 N N N -11.325 -11.588 19.879 -0.486 -0.612 -0.505 C11  D47 5  
D47 C8   C6  C  0 1 N N S -8.954  -12.642 19.746 1.159  -1.122 1.418  C8   D47 6  
D47 C9   C7  C  0 1 N N N -10.218 -12.192 19.026 0.475  -0.091 0.546  C9   D47 7  
D47 C12  C8  C  0 1 N N S -11.661 -12.541 21.045 -1.592 -1.391 0.214  C12  D47 8  
D47 C3   C9  C  0 1 Y N N -8.128  -17.536 17.562 5.839  0.269  -0.311 C3   D47 9  
D47 C1   C10 C  0 1 Y N N -10.359 -16.796 18.083 4.455  1.605  1.121  C1   D47 10 
D47 C2   C11 C  0 1 Y N N -9.492  -17.800 17.663 5.615  1.443  0.386  C2   D47 11 
D47 S7   S1  S  0 1 N N N -7.801  -13.709 18.833 2.536  -1.877 0.511  S7   D47 12 
D47 O10  O1  O  0 1 N N N -10.364 -12.306 17.836 0.685  1.091  0.680  O10  D47 13 
D47 N13  N1  N  0 1 N N N -10.433 -12.951 21.732 -1.032 -2.304 1.198  N13  D47 14 
D47 O15  O2  O  0 1 N N N -8.300  -13.458 21.832 0.446  -2.967 2.662  O15  D47 15 
D47 C16  C12 C  0 1 Y N N -12.250 -13.841 20.530 -2.381 -2.178 -0.800 C16  D47 16 
D47 C17  C13 C  0 1 Y N N -13.006 -13.969 19.368 -3.001 -3.377 -0.493 C17  D47 17 
D47 C18  C14 C  0 1 Y N N -13.415 -15.206 19.092 -3.659 -3.945 -1.505 C18  D47 18 
D47 S19  S2  S  0 1 Y N N -12.855 -16.282 20.361 -3.511 -2.941 -2.941 S19  D47 19 
D47 C20  C15 C  0 1 Y N N -12.070 -14.976 21.210 -2.540 -1.770 -2.060 C20  D47 20 
D47 C21  C16 C  0 1 Y N N -12.659 -11.888 21.986 -2.511 -0.419 0.907  C21  D47 21 
D47 C22  C17 C  0 1 Y N N -12.336 -10.728 22.687 -3.524 -0.896 1.714  C22  D47 22 
D47 C23  C18 C  0 1 Y N N -13.288 -10.167 23.539 -4.368 0.005  2.351  C23  D47 23 
D47 C24  C19 C  0 1 Y N N -14.541 -10.764 23.661 -4.161 1.358  2.150  C24  D47 24 
D47 C25  C20 C  0 1 Y N N -14.820 -11.916 22.916 -3.121 1.768  1.324  C25  D47 25 
D47 N26  N2  N  0 1 Y N N -13.868 -12.429 22.136 -2.334 0.878  0.739  N26  D47 26 
D47 N27  N3  N  0 1 N N N -16.067 -12.539 23.071 -2.901 3.125  1.114  N27  D47 27 
D47 C28  C21 C  0 1 Y N N -16.705 -13.407 22.159 -1.936 3.543  0.191  C28  D47 28 
D47 C29  C22 C  0 1 Y N N -16.008 -14.411 21.467 -1.697 2.793  -0.953 C29  D47 29 
D47 C30  C23 C  0 1 Y N N -16.681 -15.256 20.596 -0.745 3.208  -1.863 C30  D47 30 
D47 C31  C24 C  0 1 Y N N -18.062 -15.139 20.449 -0.028 4.371  -1.635 C31  D47 31 
D47 C32  C25 C  0 1 Y N N -18.776 -14.178 21.161 -0.265 5.121  -0.495 C32  D47 32 
D47 C33  C26 C  0 1 Y N N -18.098 -13.324 22.022 -1.220 4.712  0.415  C33  D47 33 
D47 F34  F1  F  0 1 N N N -18.709 -15.964 19.603 0.904  4.775  -2.526 F34  D47 34 
D47 CL35 CL1 CL 0 0 N N N -5.926  -15.983 17.816 5.185  -2.221 -1.145 CL35 D47 35 
D47 H1   H1  H  0 1 N N N -10.562 -14.773 18.778 2.608  0.723  1.735  H1   D47 36 
D47 H2   H2  H  0 1 N N N -10.990 -10.621 20.282 -0.921 0.226  -1.049 H2   D47 37 
D47 H3   H3  H  0 1 N N N -12.222 -11.436 19.260 0.037  -1.270 -1.198 H3   D47 38 
D47 H4   H4  H  0 1 N N N -8.366  -11.718 19.852 1.535  -0.644 2.323  H4   D47 39 
D47 H5   H5  H  0 1 N N N -7.453  -18.302 17.208 6.746  0.147  -0.884 H5   D47 40 
D47 H6   H6  H  0 1 N N N -11.420 -16.993 18.128 4.285  2.523  1.665  H6   D47 41 
D47 H7   H7  H  0 1 N N N -9.875  -18.779 17.416 6.349  2.235  0.357  H7   D47 42 
D47 H8   H8  H  0 1 N N N -10.502 -13.162 22.707 -1.572 -3.070 1.448  H8   D47 43 
D47 H9   H9  H  0 1 N N N -13.244 -13.126 18.736 -2.955 -3.820 0.491  H9   D47 44 
D47 H10  H10 H  0 1 N N N -13.995 -15.499 18.230 -4.199 -4.878 -1.451 H10  D47 45 
D47 H11  H11 H  0 1 N N N -11.525 -15.070 22.138 -2.132 -0.860 -2.475 H11  D47 46 
D47 H12  H12 H  0 1 N N N -11.364 -10.270 22.573 -3.659 -1.959 1.850  H12  D47 47 
D47 H13  H13 H  0 1 N N N -13.055 -9.275  24.101 -5.168 -0.343 2.987  H13  D47 48 
D47 H14  H14 H  0 1 N N N -15.286 -10.344 24.321 -4.799 2.086  2.629  H14  D47 49 
D47 H15  H15 H  0 1 N N N -16.558 -12.347 23.921 -3.417 3.782  1.607  H15  D47 50 
D47 H16  H16 H  0 1 N N N -14.944 -14.526 21.613 -2.256 1.886  -1.131 H16  D47 51 
D47 H17  H17 H  0 1 N N N -16.137 -16.001 20.034 -0.558 2.625  -2.753 H17  D47 52 
D47 H18  H18 H  0 1 N N N -19.847 -14.097 21.045 0.295  6.027  -0.319 H18  D47 53 
D47 H19  H19 H  0 1 N N N -18.649 -12.590 22.591 -1.405 5.297  1.304  H19  D47 54 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
D47 C3   C2  DOUB Y N 1  
D47 C3   C4  SING Y N 2  
D47 C2   C1  SING Y N 3  
D47 CL35 C4  SING N N 4  
D47 O10  C9  DOUB N N 5  
D47 C4   C5  DOUB Y N 6  
D47 C1   C6  DOUB Y N 7  
D47 C5   C6  SING Y N 8  
D47 C5   S7  SING N N 9  
D47 S7   C8  SING N N 10 
D47 C9   C8  SING N N 11 
D47 C9   C11 SING N N 12 
D47 C18  C17 DOUB Y N 13 
D47 C18  S19 SING Y N 14 
D47 C17  C16 SING Y N 15 
D47 F34  C31 SING N N 16 
D47 C8   C14 SING N N 17 
D47 C11  C12 SING N N 18 
D47 S19  C20 SING Y N 19 
D47 C31  C30 DOUB Y N 20 
D47 C31  C32 SING Y N 21 
D47 C16  C12 SING N N 22 
D47 C16  C20 DOUB Y N 23 
D47 C30  C29 SING Y N 24 
D47 C12  N13 SING N N 25 
D47 C12  C21 SING N N 26 
D47 C32  C33 DOUB Y N 27 
D47 C14  N13 SING N N 28 
D47 C14  O15 DOUB N N 29 
D47 C29  C28 DOUB Y N 30 
D47 C21  N26 DOUB Y N 31 
D47 C21  C22 SING Y N 32 
D47 C33  C28 SING Y N 33 
D47 N26  C25 SING Y N 34 
D47 C28  N27 SING N N 35 
D47 C22  C23 DOUB Y N 36 
D47 C25  N27 SING N N 37 
D47 C25  C24 DOUB Y N 38 
D47 C23  C24 SING Y N 39 
D47 C6   H1  SING N N 40 
D47 C11  H2  SING N N 41 
D47 C11  H3  SING N N 42 
D47 C8   H4  SING N N 43 
D47 C3   H5  SING N N 44 
D47 C1   H6  SING N N 45 
D47 C2   H7  SING N N 46 
D47 N13  H8  SING N N 47 
D47 C17  H9  SING N N 48 
D47 C18  H10 SING N N 49 
D47 C20  H11 SING N N 50 
D47 C22  H12 SING N N 51 
D47 C23  H13 SING N N 52 
D47 C24  H14 SING N N 53 
D47 N27  H15 SING N N 54 
D47 C29  H16 SING N N 55 
D47 C30  H17 SING N N 56 
D47 C32  H18 SING N N 57 
D47 C33  H19 SING N N 58 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
D47 SMILES           ACDLabs              12.01 "c1(c(cccc1)SC2C(NC(CC2=O)(c3nc(ccc3)Nc4ccc(cc4)F)c5cscc5)=O)Cl"                                                                                                                               
D47 InChI            InChI                1.03  "InChI=1S/C26H19ClFN3O2S2/c27-19-4-1-2-5-21(19)35-24-20(32)14-26(31-25(24)33,16-12-13-34-15-16)22-6-3-7-23(30-22)29-18-10-8-17(28)9-11-18/h1-13,15,24H,14H2,(H,29,30)(H,31,33)/t24-,26-/m0/s1" 
D47 InChIKey         InChI                1.03  QQAHTOHBFSHZCZ-AHWVRZQESA-N                                                                                                                                                                    
D47 SMILES_CANONICAL CACTVS               3.385 "Fc1ccc(Nc2cccc(n2)[C@]3(CC(=O)[C@H](Sc4ccccc4Cl)C(=O)N3)c5cscc5)cc1"                                                                                                                          
D47 SMILES           CACTVS               3.385 "Fc1ccc(Nc2cccc(n2)[C]3(CC(=O)[CH](Sc4ccccc4Cl)C(=O)N3)c5cscc5)cc1"                                                                                                                            
D47 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.6 "c1ccc(c(c1)S[C@H]2C(=O)C[C@](NC2=O)(c3ccsc3)c4cccc(n4)Nc5ccc(cc5)F)Cl"                                                                                                                        
D47 SMILES           "OpenEye OEToolkits" 2.0.6 "c1ccc(c(c1)SC2C(=O)CC(NC2=O)(c3ccsc3)c4cccc(n4)Nc5ccc(cc5)F)Cl"                                                                                                                               
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
D47 "SYSTEMATIC NAME" ACDLabs              12.01 "(3S,6S)-3-[(2-chlorophenyl)sulfanyl]-6-{6-[(4-fluorophenyl)amino]pyridin-2-yl}-6-(thiophen-3-yl)piperidine-2,4-dione"    
D47 "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.6 "(3~{S},6~{S})-3-(2-chlorophenyl)sulfanyl-6-[6-[(4-fluorophenyl)amino]pyridin-2-yl]-6-thiophen-3-yl-piperidine-2,4-dione" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
D47 "Create component" 2017-10-17 RCSB 
D47 "Initial release"  2018-10-24 RCSB 
# 
