data_B87
# 
_chem_comp.id                                    B87 
_chem_comp.name                                  "4-(1-benzothiophen-2-yl)-6-[4-(2-oxo-2-pyrrolidin-1-ylethyl)piperazin-1-yl]pyrimidine" 
_chem_comp.type                                  NON-POLYMER 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C22 H25 N5 O S" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2009-08-19 
_chem_comp.pdbx_modified_date                    2011-06-04 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        407.532 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     B87 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        3IPY 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
B87 C1   C1   C 0 1 N N N 33.169 7.891  44.199 8.651  2.236  -0.544 C1   B87 1  
B87 C2   C2   C 0 1 N N N 32.444 8.784  43.161 7.250  1.960  -1.129 C2   B87 2  
B87 N3   N3   N 0 1 N N N 31.134 9.008  43.786 6.614  0.945  -0.277 N3   B87 3  
B87 C4   C4   C 0 1 N N N 31.213 9.041  45.252 7.559  0.561  0.787  C4   B87 4  
B87 C5   C5   C 0 1 N N N 32.342 7.995  45.541 8.509  1.776  0.930  C5   B87 5  
B87 C6   C6   C 0 1 N N N 29.980 9.151  43.091 5.372  0.448  -0.442 C6   B87 6  
B87 O7   O7   O 0 1 N N N 29.241 10.129 43.145 4.678  0.839  -1.356 O7   B87 7  
B87 C8   C8   C 0 1 N N N 29.573 8.011  42.185 4.845  -0.594 0.511  C8   B87 8  
B87 N9   N9   N 0 1 N N N 29.659 6.739  42.891 3.479  -0.970 0.120  N9   B87 9  
B87 C10  C10  C 0 1 N N N 28.790 6.536  44.066 3.020  -2.145 0.873  C10  B87 10 
B87 C11  C11  C 0 1 N N N 29.459 5.577  45.042 1.629  -2.551 0.382  C11  B87 11 
B87 N12  N12  N 0 1 N N N 29.858 4.487  44.169 0.703  -1.424 0.555  N12  B87 12 
B87 C13  C13  C 0 1 N N N 31.020 4.714  43.335 1.162  -0.248 -0.199 C13  B87 13 
B87 C14  C14  C 0 1 N N N 30.579 5.752  42.311 2.553  0.158  0.293  C14  B87 14 
B87 C15  C15  C 0 1 Y N N 29.129 3.285  44.105 -0.586 -1.778 0.185  C15  B87 15 
B87 C16  C16  C 0 1 Y N N 29.536 2.260  43.253 -1.625 -0.854 0.271  C16  B87 16 
B87 C17  C17  C 0 1 Y N N 28.791 1.088  43.216 -2.903 -1.261 -0.113 C17  B87 17 
B87 N18  N18  N 0 1 Y N N 27.690 0.977  44.001 -3.079 -2.512 -0.545 N18  B87 18 
B87 C19  C19  C 0 1 Y N N 27.306 1.965  44.823 -2.069 -3.353 -0.610 C19  B87 19 
B87 N20  N20  N 0 1 Y N N 28.013 3.103  44.869 -0.847 -3.004 -0.261 N20  B87 20 
B87 C21  C21  C 0 1 Y N N 29.182 -0.030 42.313 -4.042 -0.324 -0.042 C21  B87 21 
B87 S22  S22  S 0 1 Y N N 28.017 -1.328 42.308 -3.925 1.337  0.508  S22  B87 22 
B87 C23  C23  C 0 1 Y N N 28.854 -2.268 41.212 -5.644 1.615  0.254  C23  B87 23 
B87 C24  C24  C 0 1 Y N N 30.091 -1.570 40.817 -6.246 0.451  -0.235 C24  B87 24 
B87 C25  C25  C 0 1 Y N N 30.279 -0.277 41.459 -5.291 -0.629 -0.394 C25  B87 25 
B87 C26  C26  C 0 1 Y N N 28.486 -3.504 40.705 -6.418 2.761  0.463  C26  B87 26 
B87 C27  C27  C 0 1 Y N N 29.348 -4.114 39.791 -7.765 2.745  0.190  C27  B87 27 
B87 C28  C28  C 0 1 Y N N 30.526 -3.482 39.403 -8.366 1.591  -0.296 C28  B87 28 
B87 C29  C29  C 0 1 Y N N 30.908 -2.222 39.897 -7.633 0.465  -0.507 C29  B87 29 
B87 H1   H1   H 0 1 N N N 33.205 6.848  43.850 9.408  1.645  -1.061 H1   B87 30 
B87 H1A  H1A  H 0 1 N N N 34.200 8.243  44.355 8.888  3.299  -0.596 H1A  B87 31 
B87 H2   H2   H 0 1 N N N 32.981 9.728  42.989 6.658  2.875  -1.120 H2   B87 32 
B87 H2A  H2A  H 0 1 N N N 32.351 8.283  42.186 7.340  1.585  -2.148 H2A  B87 33 
B87 H4   H4   H 0 1 N N N 31.471 10.042 45.629 7.026  0.384  1.722  H4   B87 34 
B87 H4A  H4A  H 0 1 N N N 30.260 8.760  45.723 8.119  -0.327 0.495  H4A  B87 35 
B87 H5   H5   H 0 1 N N N 31.912 7.020  45.813 9.473  1.472  1.339  H5   B87 36 
B87 H5A  H5A  H 0 1 N N N 32.982 8.329  46.371 8.056  2.557  1.541  H5A  B87 37 
B87 H8   H8   H 0 1 N N N 28.536 8.168  41.852 5.487  -1.474 0.479  H8   B87 38 
B87 H8A  H8A  H 0 1 N N N 30.245 7.986  41.315 4.834  -0.189 1.523  H8A  B87 39 
B87 H10  H10  H 0 1 N N N 28.618 7.502  44.564 3.716  -2.970 0.719  H10  B87 40 
B87 H10A H10A H 0 0 N N N 27.828 6.113  43.740 2.974  -1.901 1.935  H10A B87 41 
B87 H11  H11  H 0 1 N N N 30.321 6.037  45.548 1.681  -2.821 -0.673 H11  B87 42 
B87 H11A H11A H 0 0 N N N 28.769 5.243  45.831 1.274  -3.405 0.959  H11A B87 43 
B87 H13  H13  H 0 1 N N N 31.866 5.086  43.932 1.208  -0.492 -1.260 H13  B87 44 
B87 H13A H13A H 0 0 N N N 31.337 3.784  42.840 0.466  0.577  -0.045 H13A B87 45 
B87 H14  H14  H 0 1 N N N 30.067 5.236  41.485 2.501  0.428  1.348  H14  B87 46 
B87 H14A H14A H 0 0 N N N 31.470 6.278  41.937 2.908  1.012  -0.284 H14A B87 47 
B87 H16  H16  H 0 1 N N N 30.413 2.375  42.634 -1.446 0.150  0.626  H16  B87 48 
B87 H19  H19  H 0 1 N N N 26.431 1.844  45.445 -2.246 -4.358 -0.965 H19  B87 49 
B87 H25  H25  H 0 1 N N N 31.119 0.384  41.307 -5.570 -1.604 -0.765 H25  B87 50 
B87 H26  H26  H 0 1 N N N 27.564 -3.979 41.006 -5.956 3.661  0.841  H26  B87 51 
B87 H27  H27  H 0 1 N N N 29.099 -5.082 39.383 -8.358 3.633  0.353  H27  B87 52 
B87 H28  H28  H 0 1 N N N 31.172 -3.979 38.695 -9.425 1.588  -0.508 H28  B87 53 
B87 H29  H29  H 0 1 N N N 31.828 -1.764 39.565 -8.114 -0.425 -0.886 H29  B87 54 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
B87 C1  C2   SING N N 1  
B87 C1  C5   SING N N 2  
B87 C2  N3   SING N N 3  
B87 N3  C4   SING N N 4  
B87 N3  C6   SING N N 5  
B87 C4  C5   SING N N 6  
B87 C6  O7   DOUB N N 7  
B87 C6  C8   SING N N 8  
B87 C8  N9   SING N N 9  
B87 N9  C10  SING N N 10 
B87 N9  C14  SING N N 11 
B87 C10 C11  SING N N 12 
B87 C11 N12  SING N N 13 
B87 N12 C13  SING N N 14 
B87 N12 C15  SING N N 15 
B87 C13 C14  SING N N 16 
B87 C15 C16  DOUB Y N 17 
B87 C15 N20  SING Y N 18 
B87 C16 C17  SING Y N 19 
B87 C17 N18  DOUB Y N 20 
B87 C17 C21  SING Y N 21 
B87 N18 C19  SING Y N 22 
B87 C19 N20  DOUB Y N 23 
B87 C21 S22  SING Y N 24 
B87 C21 C25  DOUB Y N 25 
B87 S22 C23  SING Y N 26 
B87 C23 C24  DOUB Y N 27 
B87 C23 C26  SING Y N 28 
B87 C24 C25  SING Y N 29 
B87 C24 C29  SING Y N 30 
B87 C26 C27  DOUB Y N 31 
B87 C27 C28  SING Y N 32 
B87 C28 C29  DOUB Y N 33 
B87 C1  H1   SING N N 34 
B87 C1  H1A  SING N N 35 
B87 C2  H2   SING N N 36 
B87 C2  H2A  SING N N 37 
B87 C4  H4   SING N N 38 
B87 C4  H4A  SING N N 39 
B87 C5  H5   SING N N 40 
B87 C5  H5A  SING N N 41 
B87 C8  H8   SING N N 42 
B87 C8  H8A  SING N N 43 
B87 C10 H10  SING N N 44 
B87 C10 H10A SING N N 45 
B87 C11 H11  SING N N 46 
B87 C11 H11A SING N N 47 
B87 C13 H13  SING N N 48 
B87 C13 H13A SING N N 49 
B87 C14 H14  SING N N 50 
B87 C14 H14A SING N N 51 
B87 C16 H16  SING N N 52 
B87 C19 H19  SING N N 53 
B87 C25 H25  SING N N 54 
B87 C26 H26  SING N N 55 
B87 C27 H27  SING N N 56 
B87 C28 H28  SING N N 57 
B87 C29 H29  SING N N 58 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
B87 SMILES           ACDLabs              11.02 "O=C(N1CCCC1)CN5CCN(c4ncnc(c3sc2ccccc2c3)c4)CC5"                                                                                                     
B87 SMILES_CANONICAL CACTVS               3.352 "O=C(CN1CCN(CC1)c2cc(ncn2)c3sc4ccccc4c3)N5CCCC5"                                                                                                     
B87 SMILES           CACTVS               3.352 "O=C(CN1CCN(CC1)c2cc(ncn2)c3sc4ccccc4c3)N5CCCC5"                                                                                                     
B87 SMILES_CANONICAL "OpenEye OEToolkits" 1.7.0 "c1ccc2c(c1)cc(s2)c3cc(ncn3)N4CCN(CC4)CC(=O)N5CCCC5"                                                                                                 
B87 SMILES           "OpenEye OEToolkits" 1.7.0 "c1ccc2c(c1)cc(s2)c3cc(ncn3)N4CCN(CC4)CC(=O)N5CCCC5"                                                                                                 
B87 InChI            InChI                1.03  "InChI=1S/C22H25N5OS/c28-22(27-7-3-4-8-27)15-25-9-11-26(12-10-25)21-14-18(23-16-24-21)20-13-17-5-1-2-6-19(17)29-20/h1-2,5-6,13-14,16H,3-4,7-12,15H2" 
B87 InChIKey         InChI                1.03  NDLZMZLRTHDNSQ-UHFFFAOYSA-N                                                                                                                          
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
B87 "SYSTEMATIC NAME" ACDLabs              11.02 "2-{4-[6-(1-benzothiophen-2-yl)pyrimidin-4-yl]piperazin-1-yl}-1-(pyrrolidin-1-yl)ethanone" 
B87 "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.6.1 "2-[4-[6-(1-benzothiophen-2-yl)pyrimidin-4-yl]piperazin-1-yl]-1-pyrrolidin-1-yl-ethanone"  
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
B87 "Create component"     2009-08-19 RCSB 
B87 "Modify aromatic_flag" 2011-06-04 RCSB 
B87 "Modify descriptor"    2011-06-04 RCSB 
# 
