data_7D7
#

_chem_comp.id                                   7D7
_chem_comp.name                                 "[(2S,3R,4R)-4-(6-amino-9H-purin-9-yl)oxetane-2,3-diyl]dimethanol"
_chem_comp.type                                 NON-POLYMER
_chem_comp.pdbx_type                            HETAIN
_chem_comp.formula                              "C10 H13 N5 O3"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        OXETANOCIN
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2016-10-07
_chem_comp.pdbx_modified_date                   2020-06-17
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       251.242
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    7D7
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       5TK9
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 RCSB
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
7D7  O01  O1   O  0  1  N  N  N  -5.378  -20.510  -18.683   2.028  -1.178  -0.797  O01  7D7   1  
7D7  C02  C1   C  0  1  N  N  S  -4.061  -20.561  -19.295   2.983  -0.189  -0.392  C02  7D7   2  
7D7  C03  C2   C  0  1  N  N  N  -3.215  -21.815  -18.925   4.013  -0.713   0.611  C03  7D7   3  
7D7  O04  O2   O  0  1  N  N  N  -2.746  -21.667  -17.561   5.080  -1.352  -0.093  O04  7D7   4  
7D7  C05  C3   C  0  1  N  N  R  -3.686  -19.342  -18.574   1.835   0.589   0.265  C05  7D7   5  
7D7  C06  C4   C  0  1  N  N  N  -3.259  -18.237  -19.563   1.906   2.106   0.079  C06  7D7   6  
7D7  O07  O3   O  0  1  N  N  N  -4.334  -18.061  -20.505   2.754   2.670   1.081  O07  7D7   7  
7D7  C08  C5   C  0  1  N  N  R  -5.067  -19.189  -18.112   1.031  -0.149  -0.812  C08  7D7   8  
7D7  N09  N1   N  0  1  Y  N  N  -5.479  -19.188  -16.767  -0.282  -0.604  -0.348  N09  7D7   9  
7D7  C10  C6   C  0  1  Y  N  N  -4.900  -19.982  -15.772  -0.572  -1.830   0.174  C10  7D7  10  
7D7  N11  N2   N  0  1  Y  N  N  -5.554  -19.730  -14.597  -1.835  -1.894   0.482  N11  7D7  11  
7D7  C12  C7   C  0  1  Y  N  N  -6.530  -18.795  -14.847  -2.434  -0.718   0.178  C12  7D7  12  
7D7  C13  C8   C  0  1  Y  N  N  -7.494  -18.173  -13.984  -3.743  -0.218   0.286  C13  7D7  13  
7D7  N14  N3   N  0  1  N  N  N  -7.553  -18.525  -12.556  -4.759  -1.000   0.806  N14  7D7  14  
7D7  N15  N4   N  0  1  Y  N  N  -8.353  -17.261  -14.521  -3.982   1.024  -0.123  N15  7D7  15  
7D7  C16  C9   C  0  1  Y  N  N  -8.303  -16.942  -15.846  -3.019   1.778  -0.621  C16  7D7  16  
7D7  N17  N5   N  0  1  Y  N  N  -7.402  -17.510  -16.671  -1.779   1.352  -0.741  N17  7D7  17  
7D7  C18  C10  C  0  1  Y  N  N  -6.488  -18.466  -16.171  -1.443   0.126  -0.353  C18  7D7  18  
7D7  H1   H1   H  0  1  N  N  N  -4.093  -20.413  -20.384   3.441   0.339  -1.228  H1   7D7  19  
7D7  H2   H2   H  0  1  N  N  N  -3.836  -22.719  -19.008   4.408   0.118   1.194  H2   7D7  20  
7D7  H3   H3   H  0  1  N  N  N  -2.355  -21.897  -19.606   3.537  -1.432   1.278  H3   7D7  21  
7D7  H4   H4   H  0  1  N  N  N  -2.227  -22.426  -17.320   5.771  -1.709   0.481  H4   7D7  22  
7D7  H5   H5   H  0  1  N  N  N  -2.955  -19.501  -17.768   1.609   0.285   1.287  H5   7D7  23  
7D7  H6   H6   H  0  1  N  N  N  -2.343  -18.539  -20.091   2.310   2.332  -0.908  H6   7D7  24  
7D7  H7   H7   H  0  1  N  N  N  -3.077  -17.297  -19.021   0.906   2.530   0.168  H7   7D7  25  
7D7  H8   H8   H  0  1  N  N  N  -4.101  -17.384  -21.130   2.846   3.630   1.024  H8   7D7  26  
7D7  H9   H9   H  0  1  N  N  N  -5.576  -18.399  -18.684   0.979   0.390  -1.758  H9   7D7  27  
7D7  H10  H10  H  0  1  N  N  N  -4.081  -20.673  -15.907   0.141  -2.629   0.312  H10  7D7  28  
7D7  H11  H11  H  0  1  N  N  N  -8.283  -18.004  -12.114  -4.571  -1.905   1.102  H11  7D7  29  
7D7  H12  H12  H  0  1  N  N  N  -7.737  -19.503  -12.461  -5.658  -0.644   0.876  H12  7D7  30  
7D7  H13  H13  H  0  1  N  N  N  -9.000  -16.219  -16.242  -3.257   2.781  -0.941  H13  7D7  31  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
7D7  O07  C06  SING  N  N   1  
7D7  C06  C05  SING  N  N   2  
7D7  C02  C03  SING  N  N   3  
7D7  C02  O01  SING  N  N   4  
7D7  C02  C05  SING  N  N   5  
7D7  C03  O04  SING  N  N   6  
7D7  O01  C08  SING  N  N   7  
7D7  C05  C08  SING  N  N   8  
7D7  C08  N09  SING  N  N   9  
7D7  N09  C18  SING  Y  N  10  
7D7  N09  C10  SING  Y  N  11  
7D7  N17  C18  DOUB  Y  N  12  
7D7  N17  C16  SING  Y  N  13  
7D7  C18  C12  SING  Y  N  14  
7D7  C16  N15  DOUB  Y  N  15  
7D7  C10  N11  DOUB  Y  N  16  
7D7  C12  N11  SING  Y  N  17  
7D7  C12  C13  DOUB  Y  N  18  
7D7  N15  C13  SING  Y  N  19  
7D7  C13  N14  SING  N  N  20  
7D7  C02  H1   SING  N  N  21  
7D7  C03  H2   SING  N  N  22  
7D7  C03  H3   SING  N  N  23  
7D7  O04  H4   SING  N  N  24  
7D7  C05  H5   SING  N  N  25  
7D7  C06  H6   SING  N  N  26  
7D7  C06  H7   SING  N  N  27  
7D7  O07  H8   SING  N  N  28  
7D7  C08  H9   SING  N  N  29  
7D7  C10  H10  SING  N  N  30  
7D7  N14  H11  SING  N  N  31  
7D7  N14  H12  SING  N  N  32  
7D7  C16  H13  SING  N  N  33  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
7D7  SMILES            ACDLabs               12.01  "O1C(C(C1CO)CO)n2c3c(nc2)c(N)ncn3"  
7D7  InChI             InChI                 1.03   "InChI=1S/C10H13N5O3/c11-8-7-9(13-3-12-8)15(4-14-7)10-5(1-16)6(2-17)18-10/h3-6,10,16-17H,1-2H2,(H2,11,12,13)/t5-,6-,10-/m1/s1"  
7D7  InChIKey          InChI                 1.03   LMJVXGOFWKVXAW-OXOINMOOSA-N  
7D7  SMILES_CANONICAL  CACTVS                3.385  "Nc1ncnc2n(cnc12)[C@@H]3O[C@H](CO)[C@H]3CO"  
7D7  SMILES            CACTVS                3.385  "Nc1ncnc2n(cnc12)[CH]3O[CH](CO)[CH]3CO"  
7D7  SMILES_CANONICAL  "OpenEye OEToolkits"  2.0.6  "c1nc(c2c(n1)n(cn2)[C@H]3[C@@H]([C@H](O3)CO)CO)N"  
7D7  SMILES            "OpenEye OEToolkits"  2.0.6  "c1nc(c2c(n1)n(cn2)C3C(C(O3)CO)CO)N"  
#   #
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
7D7  "SYSTEMATIC NAME"  ACDLabs               12.01  "[(2S,3R,4R)-4-(6-amino-9H-purin-9-yl)oxetane-2,3-diyl]dimethanol"  
7D7  "SYSTEMATIC NAME"  "OpenEye OEToolkits"  2.0.6  "[(2~{R},3~{R},4~{S})-2-(6-aminopurin-9-yl)-4-(hydroxymethyl)oxetan-3-yl]methanol"  
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
7D7  "Create component"  2016-10-07  RCSB  
7D7  "Initial release"   2016-11-16  RCSB  
7D7  "Modify synonyms"   2020-06-05  PDBE  
#
_pdbx_chem_comp_synonyms.ordinal     1
_pdbx_chem_comp_synonyms.comp_id     7D7
_pdbx_chem_comp_synonyms.name        OXETANOCIN
_pdbx_chem_comp_synonyms.provenance  ?
_pdbx_chem_comp_synonyms.type        ?
##
