data_6F7
# 
_chem_comp.id                                    6F7 
_chem_comp.name                                  
;3'-deoxy-5-methyluridine 5'-(dihydrogen phosphate)
;
_chem_comp.type                                  "RNA linking" 
_chem_comp.pdbx_type                             ATOMN 
_chem_comp.formula                               "C10 H15 N2 O8 P" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2016-03-29 
_chem_comp.pdbx_modified_date                    2016-12-09 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        322.208 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     6F7 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        5J02 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  EBI 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
6F7 N1    N1  N 0 1 N N N 211.660 215.681 234.089 2.217  -0.268 -0.282 N1    6F7 1  
6F7 C2    C1  C 0 1 N N N 212.634 214.753 233.749 2.184  0.423  0.872  C2    6F7 2  
6F7 N3    N2  N 0 1 N N N 213.585 215.068 232.810 3.188  1.255  1.208  N3    6F7 3  
6F7 C4    C2  C 0 1 N N N 213.540 216.309 232.232 4.247  1.409  0.388  C4    6F7 4  
6F7 C5    C3  C 0 1 N N N 212.530 217.266 232.587 4.293  0.687  -0.829 C5    6F7 5  
6F7 C5M   C4  C 0 1 N N N 212.441 218.641 231.978 5.466  0.841  -1.763 C5M   6F7 6  
6F7 C6    C5  C 0 1 N N N 211.603 216.942 233.510 3.276  -0.144 -1.139 C6    6F7 7  
6F7 O2    O1  O 0 1 N N N 212.652 213.657 234.279 1.236  0.294  1.622  O2    6F7 8  
6F7 O4    O2  O 0 1 N N N 214.399 216.558 231.403 5.152  2.165  0.689  O4    6F7 9  
6F7 "C1'" C6  C 0 1 N N R 210.643 215.323 235.100 1.110  -1.167 -0.621 "C1'" 6F7 10 
6F7 "C2'" C7  C 0 1 N N R 211.116 215.751 236.494 1.049  -2.328 0.391  "C2'" 6F7 11 
6F7 "O2'" O3  O 0 1 N N N 211.053 214.652 237.392 1.216  -3.581 -0.276 "O2'" 6F7 12 
6F7 "C3'" C8  C 0 1 N N N 210.145 216.847 236.922 -0.369 -2.224 1.003  "C3'" 6F7 13 
6F7 "C4'" C9  C 0 1 N N S 208.931 216.591 236.040 -1.127 -1.404 -0.071 "C4'" 6F7 14 
6F7 "O4'" O4  O 0 1 N N N 209.440 216.017 234.819 -0.138 -0.459 -0.534 "O4'" 6F7 15 
6F7 "C5'" C10 C 0 1 N N N 208.211 217.871 235.732 -2.322 -0.677 0.549  "C5'" 6F7 16 
6F7 "O5'" O5  O 0 1 N N N 209.017 218.656 234.820 -3.069 -0.025 -0.479 "O5'" 6F7 17 
6F7 P     P1  P 0 1 N N N 208.297 219.835 233.962 -4.397 0.838  -0.185 P     6F7 18 
6F7 OP1   O6  O 0 1 N N N 207.497 220.739 234.856 -5.552 -0.131 0.381  OP1   6F7 19 
6F7 OP2   O7  O 0 1 N N N 209.301 220.615 233.169 -4.094 1.883  0.817  OP2   6F7 20 
6F7 O1    O8  O 0 1 N Y N 207.302 219.052 232.966 -4.899 1.531  -1.549 O1    6F7 21 
6F7 H1    H1  H 0 1 N N N 214.292 214.409 232.555 3.148  1.746  2.044  H1    6F7 22 
6F7 H2    H2  H 0 1 N N N 211.586 219.180 232.412 6.179  1.547  -1.338 H2    6F7 23 
6F7 H3    H3  H 0 1 N N N 213.368 219.195 232.186 5.950  -0.126 -1.901 H3    6F7 24 
6F7 H4    H4  H 0 1 N N N 212.304 218.552 230.890 5.116  1.213  -2.727 H4    6F7 25 
6F7 H5    H5  H 0 1 N N N 210.834 217.646 233.793 3.294  -0.703 -2.063 H5    6F7 26 
6F7 H6    H6  H 0 1 N N N 210.476 214.236 235.094 1.247  -1.559 -1.628 H6    6F7 27 
6F7 H7    H7  H 0 1 N N N 212.135 216.159 236.431 1.809  -2.201 1.163  H7    6F7 28 
6F7 H8    H8  H 0 1 N N N 211.348 214.928 238.252 1.186  -4.347 0.314  H8    6F7 29 
6F7 H9    H9  H 0 1 N N N 210.567 217.845 236.734 -0.813 -3.211 1.124  H9    6F7 30 
6F7 H10   H10 H 0 1 N N N 209.887 216.753 237.987 -0.344 -1.691 1.954  H10   6F7 31 
6F7 H11   H11 H 0 1 N N N 208.249 215.891 236.545 -1.453 -2.049 -0.887 H11   6F7 32 
6F7 H12   H12 H 0 1 N N N 208.049 218.436 236.662 -2.960 -1.398 1.061  H12   6F7 33 
6F7 H13   H13 H 0 1 N N N 207.240 217.646 235.266 -1.965 0.064  1.265  H13   6F7 34 
6F7 H14   H14 H 0 1 N N N 207.788 221.636 234.742 -5.801 -0.841 -0.225 H14   6F7 35 
6F7 H15   H15 H 0 1 N N N 207.544 219.236 232.066 -5.697 2.068  -1.447 H15   6F7 36 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
6F7 O4    C4    DOUB N N 1  
6F7 C5M   C5    SING N N 2  
6F7 C4    C5    SING N N 3  
6F7 C4    N3    SING N N 4  
6F7 C5    C6    DOUB N N 5  
6F7 N3    C2    SING N N 6  
6F7 OP2   P     DOUB N N 7  
6F7 C6    N1    SING N N 8  
6F7 C2    N1    SING N N 9  
6F7 C2    O2    DOUB N N 10 
6F7 P     "O5'" SING N N 11 
6F7 P     OP1   SING N N 12 
6F7 N1    "C1'" SING N N 13 
6F7 "O4'" "C1'" SING N N 14 
6F7 "O4'" "C4'" SING N N 15 
6F7 "O5'" "C5'" SING N N 16 
6F7 "C1'" "C2'" SING N N 17 
6F7 "C5'" "C4'" SING N N 18 
6F7 "C4'" "C3'" SING N N 19 
6F7 "C2'" "C3'" SING N N 20 
6F7 "C2'" "O2'" SING N N 21 
6F7 P     O1    SING N N 22 
6F7 N3    H1    SING N N 23 
6F7 C5M   H2    SING N N 24 
6F7 C5M   H3    SING N N 25 
6F7 C5M   H4    SING N N 26 
6F7 C6    H5    SING N N 27 
6F7 "C1'" H6    SING N N 28 
6F7 "C2'" H7    SING N N 29 
6F7 "O2'" H8    SING N N 30 
6F7 "C3'" H9    SING N N 31 
6F7 "C3'" H10   SING N N 32 
6F7 "C4'" H11   SING N N 33 
6F7 "C5'" H12   SING N N 34 
6F7 "C5'" H13   SING N N 35 
6F7 OP1   H14   SING N N 36 
6F7 O1    H15   SING N N 37 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
6F7 SMILES           ACDLabs              12.01 "N2(C1C(CC(O1)COP(O)(O)=O)O)C(=O)NC(C(=C2)C)=O"                                                                                                    
6F7 InChI            InChI                1.03  "InChI=1S/C10H15N2O8P/c1-5-3-12(10(15)11-8(5)14)9-7(13)2-6(20-9)4-19-21(16,17)18/h3,6-7,9,13H,2,4H2,1H3,(H,11,14,15)(H2,16,17,18)/t6-,7+,9+/m0/s1" 
6F7 InChIKey         InChI                1.03  NZONAJJJGMXZKE-LKEWCRSYSA-N                                                                                                                        
6F7 SMILES_CANONICAL CACTVS               3.385 "CC1=CN([C@@H]2O[C@H](CO[P](O)(O)=O)C[C@H]2O)C(=O)NC1=O"                                                                                           
6F7 SMILES           CACTVS               3.385 "CC1=CN([CH]2O[CH](CO[P](O)(O)=O)C[CH]2O)C(=O)NC1=O"                                                                                               
6F7 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.4 "CC1=CN(C(=O)NC1=O)[C@H]2[C@@H](C[C@H](O2)COP(=O)(O)O)O"                                                                                           
6F7 SMILES           "OpenEye OEToolkits" 2.0.4 "CC1=CN(C(=O)NC1=O)C2C(CC(O2)COP(=O)(O)O)O"                                                                                                        
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
6F7 "SYSTEMATIC NAME" ACDLabs              12.01 
;3'-deoxy-5-methyluridine 5'-(dihydrogen phosphate)
;
6F7 "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.4 "[(2~{S},4~{R},5~{R})-5-[5-methyl-2,4-bis(oxidanylidene)pyrimidin-1-yl]-4-oxidanyl-oxolan-2-yl]methyl dihydrogen phosphate" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
6F7 "Create component" 2016-03-29 EBI  
6F7 "Initial release"  2016-12-14 RCSB 
# 
